hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-03353490/chunk_1/iprscan-20080809-03353490.nocrc
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Query sequence: ff06519
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00233                                                 125.9    4.4e-33   2

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/2      71   179 ..     1    82 []    48.5  8.6e-10
SM00233     2/2     415   512 ..     1    82 []    77.4  1.8e-18

Alignments of top-scoring domains:
SM00233: domain 1 of 2, from 71 to 179: score 48.5, E = 8.6e-10
                   *->vikeGwLlkks...........k.swkkryfvLfngvLlyyksk...
                      +i+ GwLl   ++++ +++ +++++w++r+f+L+++ Ll y  ++ +
     ff06519    71    PIYGGWLLLAPdgtdfdnpvhrSrKWQRRFFILYEHGLLRYALDemp 117  

                   ..kpkgsipLsgc.svre.p.......cFeivt.drtlllqAeseeeree
                   ++ p+g+i+++ c+ v++++++ + + +++i t++++++++Ae++e    
     ff06519   118 ttLPQGTINMNQCtDVVDgEgrtgqkfSLCILTpEKEHFIRAETKEIVSG 167  

                   Wvealqsaiaka<-*
                   W+e l    + +   
     ff06519   168 WLEMLMVYPRTN    179  

SM00233: domain 2 of 2, from 415 to 512: score 77.4, E = 1.8e-18
                   *->vikeGwLlkks.k.swkkryfvLfngvLlyyksk......kpkgsip
                        k+GwL+k+   ++wkk++fvL +++L yy+++  ++  ++ g+i+
     ff06519   415    NFKKGWLTKQYeDgQWKKHWFVLADQSLRYYRDSvaeeaaDLDGEID 461  

                   Lsgc.svre.p.....cFeivt.drtlllqAeseeereeWvealqsaiak
                   Ls c  v+e p  ++ +F+i+t++++++l+A ++  r+ W++ + +++++
     ff06519   462 LSACyDVTEyPvqrnyGFQIHTkEGEFTLSAMTSGIRRNWIQTIMKHVHP 511  

                   a<-*
                       
     ff06519   512 T    512  

//