hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-03514121/chunk_1/iprscan-20080809-03514121.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff07566 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00520.21.ls Ion transport protein 687.2 1.2e-203 3 PF00520.21.fs Ion transport protein 681.6 5.3e-202 3 PF08016.2.fs Polycystin cation channel 30.0 4.3e-09 2 PF08763.1.fs Voltage gated calcium channel IQ domain 23.0 1.4e-05 1 PF08763.1.ls Voltage gated calcium channel IQ domain 24.9 0.00021 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00520.21.ls 1/3 109 301 .. 1 224 [] 206.4 6e-59 PF00520.21.fs 1/3 109 301 .. 1 224 [] 204.6 2.1e-58 PF00520.21.fs 2/3 787 1021 .. 1 224 [] 229.0 9.7e-66 PF00520.21.ls 2/3 787 1021 .. 1 224 [] 230.8 2.7e-66 PF00520.21.ls 3/3 1111 1321 .. 1 224 [] 249.9 4.9e-72 PF00520.21.fs 3/3 1111 1321 .. 1 224 [] 248.1 1.8e-71 PF08016.2.fs 2/2 1300 1328 .. 429 457 .] 16.8 3.8e-05 PF08763.1.ls 1/1 1459 1492 .. 1 34 [] 24.9 0.00021 PF08763.1.fs 1/1 1459 1492 .. 1 34 [] 23.0 1.4e-05 Alignments of top-scoring domains: PF00520.21.ls: domain 1 of 3, from 109 to 301: score 206.4, E = 6e-59 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl +++++f ++F+lEm lk++++g+ + Y++s +N++Df v++ ff07566 109 YAEFLFLGLFLLEMSLKMYGMGP-------RLYFHSSFNCFDFGVTV 148 pslislilsllgggse.gdlyvreskdstlsegspgllsvlrllRllRvL +s+++++++++ +g++ g +svlr+lRllR ff07566 149 GSIFEVVWAIFRPGTSfG-------------------ISVLRALRLLR-- 177 RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii ++++++++ + lr+l ++sl+ s+ks++++l+ll+l++++Fa++ ff07566 178 -IFKITKYWAS-----LRNL--VVSLMSSMKSIISLLFLLFLFIVVFALL 219 gvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtl. g+qlFgg++n + nFd+f+ a++++Fq++T+e+w++vm+++++ ff07566 220 GMQLFGGRFNFN--DGTPSANFDTFPAAIMTVFQILTGEDWNEVMYNGIr 267 .....agtvlgyiyfvsfiilgsflllNLfiavi<-* ++++ ++++++ iyf+++ ++g++ llN+f+a+ ff07566 268 sqggvSSGMWSAIYFIVLTLFGNYTLLNVFLAIA 301 PF00520.21.fs: domain 1 of 3, from 109 to 301: score 204.6, E = 2.1e-58 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl +++++f ++F+lEm lk++++g+ + Y++s +N++Df v++ ff07566 109 YAEFLFLGLFLLEMSLKMYGMGP-------RLYFHSSFNCFDFGVTV 148 pslislilsllgggse.gdlyvreskdstlsegspgllsvlrllRllRvL +s+++++++++ +g++ g +svlr+lRllR ff07566 149 GSIFEVVWAIFRPGTSfG-------------------ISVLRALRLLR-- 177 RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii ++++++++ + lr+l ++sl+ s+ks++++l+ll+l++++Fa++ ff07566 178 -IFKITKYWAS-----LRNL--VVSLMSSMKSIISLLFLLFLFIVVFALL 219 gvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtl. g+qlFgg++n + nFd+f+ a++++Fq++T+e+w++vm+++++ ff07566 220 GMQLFGGRFNFN--DGTPSANFDTFPAAIMTVFQILTGEDWNEVMYNGIr 267 .....agtvlgyiyfvsfiilgsflllNLfiavi<-* ++++ ++++++ iyf+++ ++g++ llN+f+a+ ff07566 268 sqggvSSGMWSAIYFIVLTLFGNYTLLNVFLAIA 301 PF00520.21.fs: domain 2 of 3, from 787 to 1021: score 229.0, E = 9.7e-66 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl ++dyvft++Ft+Em++k+i g++l ++Y+r+ wNilDf+vv+ ff07566 787 YFDYVFTGVFTFEMVIKMIDQGLILQ---DGSYFRDLWNILDFVVVV 830 pslislilsllgggse.gdlyvreskdstlsegspgllsvlrllRllRvL ++l+ ++l+ g + ++d + +++lR+lRvL ff07566 831 GALVAFALANALGTNKgRD------------------IKTIKSLRVLRVL 862 RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii R+l++i+r p+ l+ + ++++slk+ +n+l+++ l++fiFa+i ff07566 863 RPLKTIKRLPK-----LKAV--FDCVVTSLKNVFNILIVYKLFMFIFAVI 905 gvqlFggklnkcc...........................npingntnFd +vqlF+gk+++c ++++++++++ ++ ++++++ + ++ ++ +++d ff07566 906 AVQLFKGKFFYCTdsskdtekecignyvdheknkmevkgrEWKRHEFHYD 955 sfgnaflwlFqtmTteGwgdvmpdtl...........agtvlgyiyfvsf ++++a+l+lF+++T+eGw++v++++++ +++++++++++++ + i++v++ ff07566 956 NIIWALLTLFTVSTGEGWPQVLQHSVdvteedrgpsrSNRMEMSIFYVVY 1005 iilgsflllNLfiavi<-* ++++ f+++N+f+a+i ff07566 1006 FVVFPFFFVNIFVALI 1021 PF00520.21.ls: domain 2 of 3, from 787 to 1021: score 230.8, E = 2.7e-66 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl ++dyvft++Ft+Em++k+i g++l ++Y+r+ wNilDf+vv+ ff07566 787 YFDYVFTGVFTFEMVIKMIDQGLILQ---DGSYFRDLWNILDFVVVV 830 pslislilsllgggse.gdlyvreskdstlsegspgllsvlrllRllRvL ++l+ ++l+ g + ++d + +++lR+lRvL ff07566 831 GALVAFALANALGTNKgRD------------------IKTIKSLRVLRVL 862 RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii R+l++i+r p+ l+ + ++++slk+ +n+l+++ l++fiFa+i ff07566 863 RPLKTIKRLPK-----LKAV--FDCVVTSLKNVFNILIVYKLFMFIFAVI 905 gvqlFggklnkcc...........................npingntnFd +vqlF+gk+++c ++++++++++ ++ ++++++ + ++ ++ +++d ff07566 906 AVQLFKGKFFYCTdsskdtekecignyvdheknkmevkgrEWKRHEFHYD 955 sfgnaflwlFqtmTteGwgdvmpdtl...........agtvlgyiyfvsf ++++a+l+lF+++T+eGw++v++++++ +++++++++++++ + i++v++ ff07566 956 NIIWALLTLFTVSTGEGWPQVLQHSVdvteedrgpsrSNRMEMSIFYVVY 1005 iilgsflllNLfiavi<-* ++++ f+++N+f+a+i ff07566 1006 FVVFPFFFVNIFVALI 1021 PF00520.21.ls: domain 3 of 3, from 1111 to 1321: score 249.9, E = 4.9e-72 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl +l+++ft++F lE++lk+ia+gf ++Y+r++wNi+Df+ v+ ff07566 1111 YLNIAFTMVFSLECVLKVIAFGF-------LNYFRDTWNIFDFITVI 1150 pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL +s+ ++il+ ++ ++s+ ++s+l+l+R+ R ff07566 1151 GSITEIILTDSK-----------------LVnTSGFNMSFLKLFRAAR-- 1181 RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii l++l+r+ + +r+l l+++++s+k+l +v+ll+++l+fi+aii ff07566 1182 -LIKLLRQGYT-----IRIL--LWTFVQSFKALPYVCLLIAMLFFIYAII 1223 gvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtl. g+q+Fg+++ +++ in+++nF+sf+ +++ lF+++T+e w+++m ++l+ ff07566 1224 GMQVFGNIKLDEESHINRHNNFRSFFGSLMLLFRSATGEAWQEIMLSCLg 1273 ...................agtvlgyiyfvsfiilgsflllNLfiavi<- +++ +++++ ++++++++++gt+l+y+yfvsfi+++sfl+lNLf+avi ff07566 1274 ekgcepdttapsgqnenerCGTDLAYVYFVSFIFFCSFLMLNLFVAVI 1321 * ff07566 - - PF00520.21.fs: domain 3 of 3, from 1111 to 1321: score 248.1, E = 1.8e-71 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl +l+++ft++F lE++lk+ia+gf ++Y+r++wNi+Df+ v+ ff07566 1111 YLNIAFTMVFSLECVLKVIAFGF-------LNYFRDTWNIFDFITVI 1150 pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL +s+ ++il+ ++ ++s+ ++s+l+l+R+ R ff07566 1151 GSITEIILTDSK-----------------LVnTSGFNMSFLKLFRAAR-- 1181 RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii l++l+r+ + +r+l l+++++s+k+l +v+ll+++l+fi+aii ff07566 1182 -LIKLLRQGYT-----IRIL--LWTFVQSFKALPYVCLLIAMLFFIYAII 1223 gvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtl. g+q+Fg+++ +++ in+++nF+sf+ +++ lF+++T+e w+++m ++l+ ff07566 1224 GMQVFGNIKLDEESHINRHNNFRSFFGSLMLLFRSATGEAWQEIMLSCLg 1273 ...................agtvlgyiyfvsfiilgsflllNLfiavi<- +++ +++++ ++++++++++gt+l+y+yfvsfi+++sfl+lNLf+avi ff07566 1274 ekgcepdttapsgqnenerCGTDLAYVYFVSFIFFCSFLMLNLFVAVI 1321 * ff07566 - - PF08016.2.fs: domain 2 of 2, from 1300 to 1328: score 16.8, E = 3.8e-05 *->LlfltfvflvifiLLNlflaiIndsYnev<-* ++f++f+f+ +f+ LNlf+a+I+d+++ + ff07566 1300 VYFVSFIFFCSFLMLNLFVAVIMDNFEYL 1328 PF08763.1.ls: domain 1 of 1, from 1459 to 1492: score 24.9, E = 0.00021 *->dDeVTVGKFYATFLIQdYFRkFkkRKeeekgkep<-* + + TVGK YA I dY+++ k +K++++ +e+ ff07566 1459 ASDLTVGKIYAAMMIMDYYKQSKVKKQRQQLEEQ 1492 PF08763.1.fs: domain 1 of 1, from 1459 to 1492: score 23.0, E = 1.4e-05 *->dDeVTVGKFYATFLIQdYFRkFkkRKeeekgkep<-* + + TVGK YA I dY+++ k +K++++ +e+ ff07566 1459 ASDLTVGKIYAAMMIMDYYKQSKVKKQRQQLEEQ 1492 //