hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-03590330/chunk_1/iprscan-20080809-03590330.nocrc
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Query sequence: ff07759
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                         130.2    5.2e-36   4
PF00096.16.fs Zinc finger, C2H2 type                         122.4    1.2e-33   4
PF01096.9.fs Transcription factor S-II (TFIIS)               29.4    2.2e-08   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   1/4     135   157 ..     1    24 []    32.6    7e-07
PF00096.16.ls   1/4     135   157 ..     1    24 []    34.6  3.2e-07
PF00096.16.ls   2/4     163   185 ..     1    24 []    30.2  6.8e-06
PF00096.16.fs   2/4     163   185 ..     1    24 []    28.2  8.8e-06
PF00096.16.fs   3/4     191   213 ..     1    24 []    29.7  3.8e-06
PF00096.16.ls   3/4     191   213 ..     1    24 []    31.6  2.5e-06
PF00096.16.ls   4/4     219   241 ..     1    24 []    33.8  5.5e-07
PF00096.16.fs   4/4     219   241 ..     1    24 []    31.9  1.1e-06

Alignments of top-scoring domains:
PF00096.16.fs: domain 1 of 4, from 135 to 157: score 32.6, E = 7e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cgk+++++s+L++H+++H   
     ff07759   135    YKCE-ECGKAYKQSSHLTTHKKIH    157  

PF00096.16.ls: domain 1 of 4, from 135 to 157: score 34.6, E = 3.2e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cgk+++++s+L++H+++H   
     ff07759   135    YKCE-ECGKAYKQSSHLTTHKKIH    157  

PF00096.16.ls: domain 2 of 4, from 163 to 185: score 30.2, E = 6.8e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cgk+++++ nL++H+ +H   
     ff07759   163    YKCE-ECGKAYKQSCNLTTHKIIH    185  

PF00096.16.fs: domain 2 of 4, from 163 to 185: score 28.2, E = 8.8e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cgk+++++ nL++H+ +H   
     ff07759   163    YKCE-ECGKAYKQSCNLTTHKIIH    185  

PF00096.16.fs: domain 3 of 4, from 191 to 213: score 29.7, E = 3.8e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  +Cgk+F+++++L +H+++H   
     ff07759   191    YRCR-ECGKAFNHPATLFSHKKIH    213  

PF00096.16.ls: domain 3 of 4, from 191 to 213: score 31.6, E = 2.5e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  +Cgk+F+++++L +H+++H   
     ff07759   191    YRCR-ECGKAFNHPATLFSHKKIH    213  

PF00096.16.ls: domain 4 of 4, from 219 to 241: score 33.8, E = 5.5e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cgk+F ++s+L++H  +H   
     ff07759   219    YKCD-KCGKAFISSSTLTKHEIIH    241  

PF00096.16.fs: domain 4 of 4, from 219 to 241: score 31.9, E = 1.1e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cgk+F ++s+L++H  +H   
     ff07759   219    YKCD-KCGKAFISSSTLTKHEIIH    241  

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