hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-03590330/chunk_1/iprscan-20080809-03590330.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: ff07759
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 107.1      2e-27   4

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/4     135   157 ..     1    23 []    27.2   0.0023
SM00355      2/4     163   185 ..     1    23 []    24.5    0.015
SM00355      3/4     191   213 ..     1    23 []    28.1   0.0012
SM00355      4/4     219   241 ..     1    23 []    27.3   0.0021

Alignments of top-scoring domains:
SM00355: domain 1 of 4, from 135 to 157: score 27.2, E = 0.0023
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk +++ ++L+ H ++H   
     ff07759   135    YKCEE-CGKAYKQSsHLTTHKKIH    157  

SM00355: domain 2 of 4, from 163 to 185: score 24.5, E = 0.015
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk +++  +L+ H  +H   
     ff07759   163    YKCEE-CGKAYKQScNLTTHKIIH    185  

SM00355: domain 3 of 4, from 191 to 213: score 28.1, E = 0.0012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + Cgk f+++  L  H ++H   
     ff07759   191    YRCRE-CGKAFNHPaTLFSHKKIH    213  

SM00355: domain 4 of 4, from 219 to 241: score 27.3, E = 0.0021
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f s + L++H  +H   
     ff07759   219    YKCDK-CGKAFISSsTLTKHEIIH    241  

//