hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-04145053/chunk_1/iprscan-20080809-04145053.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff08583 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00609.10.ls Diacylglycerol kinase accessory domain 318.2 1.4e-92 1 PF00609.10.fs Diacylglycerol kinase accessory domain 316.4 4.6e-92 1 PF00781.14.fs Diacylglycerol kinase catalytic domain (pres 164.0 5.1e-48 1 PF00781.14.ls Diacylglycerol kinase catalytic domain (pres 165.9 9.6e-47 1 PF00788.13.fs Ras association (RalGDS/AF-6) domain 115.2 1.7e-31 3 PF00130.12.ls Phorbol esters/diacylglycerol binding domain 114.6 2.6e-31 3 PF00130.12.fs Phorbol esters/diacylglycerol binding domain 108.8 1.2e-29 3 PF00788.13.ls Ras association (RalGDS/AF-6) domain 93.7 5e-25 2 PF07649.3.fs C1-like domain 31.6 2e-11 2 PF07649.3.ls C1-like domain 34.6 3.3e-07 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00130.12.fs 1/3 17 67 .. 1 55 [] 41.9 6.4e-11 PF00130.12.ls 1/3 17 67 .. 1 55 [] 43.9 5.2e-10 PF00130.12.ls 2/3 78 127 .. 1 55 [] 18.7 0.00015 PF07649.3.fs 2/2 89 117 .. 1 30 [] 22.4 5.8e-08 PF00130.12.fs 3/3 140 193 .. 1 55 [] 50.1 3.3e-13 PF00130.12.ls 3/3 140 193 .. 1 55 [] 52.1 1.8e-12 PF00788.13.fs 1/3 252 300 .. 1 48 [. 25.0 6.3e-06 PF00788.13.fs 2/3 351 450 .. 1 97 [] 85.6 1.4e-22 PF00788.13.ls 2/2 351 450 .. 1 97 [] 87.6 3.5e-23 PF00781.14.ls 1/1 531 658 .. 1 152 [] 165.9 9.6e-47 PF00781.14.fs 1/1 531 658 .. 1 152 [] 164.0 5.1e-48 PF00609.10.fs 1/1 684 836 .. 1 190 [] 316.4 4.6e-92 PF00609.10.ls 1/1 684 836 .. 1 190 [] 318.2 1.4e-92 Alignments of top-scoring domains: PF00130.12.fs: domain 1 of 3, from 17 to 67: score 41.9, E = 6.4e-11 *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek H F+ t+ +ptfC +C +f+wg ++G+ C++C++ H++C ++ ff08583 17 HSFRKV-TLTKPTFCHLCSDFIWG---LAGFLCDVCNFMSHEKCLKH 59 VppeCgcg<-* V + C ff08583 60 VRIPCTSV 67 PF00130.12.ls: domain 1 of 3, from 17 to 67: score 43.9, E = 5.2e-10 *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek H F+ t+ +ptfC +C +f+wg ++G+ C++C++ H++C ++ ff08583 17 HSFRKV-TLTKPTFCHLCSDFIWG---LAGFLCDVCNFMSHEKCLKH 59 VppeCgcg<-* V + C ff08583 60 VRIPCTSV 67 PF00130.12.ls: domain 2 of 3, from 78 to 127: score 18.7, E = 0.00015 *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek H F +r + + +fC++C++ l + ++l+C++C l H +C+++ ff08583 78 HCFGPR-GLHKRKFCAVCRKVL----EAPALHCEVCELHLHPDCVPF 119 VppeCgcg<-* + + C+ ff08583 120 ACSDCRQC 127 PF07649.3.fs: domain 2 of 2, from 89 to 117: score 22.4, E = 5.8e-08 *->ktCdaCglpidgdpfYsCseCdFvlHeeCa<-* k+C +C + ++ p +C C+ lH +C+ ff08583 89 KFCAVCRKVLEA-PALHCEVCELHLHPDCV 117 PF00130.12.fs: domain 3 of 3, from 140 to 193: score 50.1, E = 3.3e-13 *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek Hh++++ ++++ ++C++C++ + s ++G++C+wC++ +H C+ ff08583 140 HHWREG-NLPSGARCEVCRKTCGSSDVLAGVRCEWCGVQAHSLCSAA 185 VppeCgcg<-* ++peCg g ff08583 186 LAPECGFG 193 PF00130.12.ls: domain 3 of 3, from 140 to 193: score 52.1, E = 1.8e-12 *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek Hh++++ ++++ ++C++C++ + s ++G++C+wC++ +H C+ ff08583 140 HHWREG-NLPSGARCEVCRKTCGSSDVLAGVRCEWCGVQAHSLCSAA 185 VppeCgcg<-* ++peCg g ff08583 186 LAPECGFG 193 PF00788.13.fs: domain 1 of 3, from 252 to 300: score 25.0, E = 6.3e-06 *->dsgvlrVygedgtpgt..yktilvskntTaeeViralLrKfgldadd ++ +l+++++d+++++++++ + vs+ aeeV++a+Lr +++ ++d ff08583 252 GKQTLKIFDGDDAVRRsqFRLVTVSRLAGAEEVLEAALRAHHI-PED 297 ped<-* p++ ff08583 298 PGH 300 PF00788.13.fs: domain 2 of 3, from 351 to 450: score 85.6, E = 1.4e-22 *->dsgvlrVygedgtpgt.yktilvskntTaeeViralLrKfgldaddp +++vl++y++++++g+ y++++v++ +Ta+ V+ ++L +g +a++p ff08583 351 AQEVLKIYPGWLKVGVaYVSVRVTPKSTARSVVLEVLPLLGRQAESP 397 edyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaq.....rsrFl e+++LvEv ++++ +r ++++dE+Pl+ +lq r+++ ++ + +rF+ ff08583 398 ESFQLVEV--AMGCRHVQR-TMLMDEQPLLDRLQDIRQMSvrqvsQTRFY 444 Lrrred<-* + + +d ff08583 445 VAESRD 450 PF00788.13.ls: domain 2 of 2, from 351 to 450: score 87.6, E = 3.5e-23 *->dsgvlrVygedgtpgt.yktilvskntTaeeViralLrKfgldaddp +++vl++y++++++g+ y++++v++ +Ta+ V+ ++L +g +a++p ff08583 351 AQEVLKIYPGWLKVGVaYVSVRVTPKSTARSVVLEVLPLLGRQAESP 397 edyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaq.....rsrFl e+++LvEv ++++ +r ++++dE+Pl+ +lq r+++ ++ + +rF+ ff08583 398 ESFQLVEV--AMGCRHVQR-TMLMDEQPLLDRLQDIRQMSvrqvsQTRFY 444 Lrrred<-* + + +d ff08583 445 VAESRD 450 PF00781.14.ls: domain 1 of 1, from 531 to 658: score 165.9, E = 9.6e-47 *->kllvivNPksGggkgkkelayerkvleklrkalneaqvfeteeqtgg +llv+vNPksGg kg+ ++l +rk+ln++qvf++++ gg ff08583 531 PLLVFVNPKSGGLKGR-------DLLCSFRKLLNPHQVFDLTN--GG 568 pahalelaralgdfkydvDlvvvaGGDGTvneVvngLagrddrakaiRif p +l+l+ ++++f +v+v+GGDGTv++V+++L ++ +r+++ ff08583 569 PLPGLHLFSQVPCF-----RVLVCGGDGTVGWVLGALEETRYRLAC---- 609 prpplGiiPlGTgNdfAraLgipldpegAkaalaallailgqilcradvv p+p ++i+PlGTgNd+ r+L+++ ++ g ++ ++l + +ad v ff08583 610 PEPSVAILPLGTGNDLGRVLRWGAGYSG-----EDPFSVLLSVD-EADAV 653 vldrw<-* +drw ff08583 654 LMDRW 658 PF00781.14.fs: domain 1 of 1, from 531 to 658: score 164.0, E = 5.1e-48 *->kllvivNPksGggkgkkelayerkvleklrkalneaqvfeteeqtgg +llv+vNPksGg kg+ ++l +rk+ln++qvf++++ gg ff08583 531 PLLVFVNPKSGGLKGR-------DLLCSFRKLLNPHQVFDLTN--GG 568 pahalelaralgdfkydvDlvvvaGGDGTvneVvngLagrddrakaiRif p +l+l+ ++++f +v+v+GGDGTv++V+++L ++ +r+++ ff08583 569 PLPGLHLFSQVPCF-----RVLVCGGDGTVGWVLGALEETRYRLAC---- 609 prpplGiiPlGTgNdfAraLgipldpegAkaalaallailgqilcradvv p+p ++i+PlGTgNd+ r+L+++ ++ g ++ ++l + +ad v ff08583 610 PEPSVAILPLGTGNDLGRVLRWGAGYSG-----EDPFSVLLSVD-EADAV 653 vldrw<-* +drw ff08583 654 LMDRW 658 PF00609.10.fs: domain 1 of 1, from 684 to 836: score 316.4, E = 4.6e-92 *->iINNYFSiGVDAsialrFHimREknPekFnSRmkNKlwYfefGtset +++NY++iG+DA+++l+FH++RE++P+kF+SR++NK++Y+++G++++ ff08583 684 QMSNYCGIGIDAELSLDFHQAREEEPGKFTSRLHNKGVYVRVGLQKI 730 lastcknLhesvelecdGqevdLsnrDaslEGIiiLNIPSygGGsnLWGe s++++Lh++++l++++qev+L+ s+EG+i++NIPS+g+G++LWG+ ff08583 731 --SHSRSLHKQIRLQVERQEVELP----SIEGLIFINIPSWGSGADLWGS 774 skksrgrirefkksitdpkdlktavqdidDgLlEVVGlegamhmgqiyts ++d++++++++dDgLlEVVG++g++hmgq+ ff08583 775 -----------------DSDTRFEKPRMDDGLLEVVGVTGVVHMGQV--- 804 iqlglasWvkLmkGrRlaQCsevRlkDiiktektlPMQVDGEP<-* q+gl+s G+R+aQ+s++R+ +++ k++P+QVDGEP ff08583 805 -QGGLRS------GIRIAQGSYFRV--TLL--KATPVQVDGEP 836 PF00609.10.ls: domain 1 of 1, from 684 to 836: score 318.2, E = 1.4e-92 *->iINNYFSiGVDAsialrFHimREknPekFnSRmkNKlwYfefGtset +++NY++iG+DA+++l+FH++RE++P+kF+SR++NK++Y+++G++++ ff08583 684 QMSNYCGIGIDAELSLDFHQAREEEPGKFTSRLHNKGVYVRVGLQKI 730 lastcknLhesvelecdGqevdLsnrDaslEGIiiLNIPSygGGsnLWGe s++++Lh++++l++++qev+L+ s+EG+i++NIPS+g+G++LWG+ ff08583 731 --SHSRSLHKQIRLQVERQEVELP----SIEGLIFINIPSWGSGADLWGS 774 skksrgrirefkksitdpkdlktavqdidDgLlEVVGlegamhmgqiyts ++d++++++++dDgLlEVVG++g++hmgq+ ff08583 775 -----------------DSDTRFEKPRMDDGLLEVVGVTGVVHMGQV--- 804 iqlglasWvkLmkGrRlaQCsevRlkDiiktektlPMQVDGEP<-* q+gl+s G+R+aQ+s++R+ +++ k++P+QVDGEP ff08583 805 -QGGLRS------GIRIAQGSYFRV--TLL--KATPVQVDGEP 836 //