hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-04145053/chunk_1/iprscan-20080809-04145053.nocrc
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Query sequence: ff08583
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00045                                                 312.2    3.5e-89   1
SM00046                                                 227.4    1.2e-63   1
SM00109                                                 133.8    1.9e-35   3
SM00314                                                  97.7    1.4e-24   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00109      1/3      17    64 ..     1    61 []    60.8  1.8e-13
SM00109      2/3      78   124 ..     1    61 []    12.8     0.18
SM00109      3/3     138   190 ..     1    61 []    60.2  2.6e-13
SM00314      1/1     351   450 ..     1   102 []    97.7  1.4e-24
SM00046      1/1     531   658 ..     1   157 []   227.4  1.2e-63
SM00045      1/1     684   836 ..     1   195 []   312.2  3.5e-89

Alignments of top-scoring domains:
SM00109: domain 1 of 3, from 17 to 64: score 60.8, E = 1.8e-13
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H+f+++t +kptfC++C ++iwg++       g+ C +C+++ H+kC
     ff08583    17    HSFRKVTLtKPTFCHLCSDFIWGLA-------GFLCDVCNFMSHEKC 56   

                   aekvpaqshksglsC<-*
                   +++v         +C   
     ff08583    57 LKHVRI-------PC    64   

SM00109: domain 2 of 3, from 78 to 124: score 12.8, E = 0.18
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H f  r  +k++fC+vCrk +          ++l C++C +  H +C
     ff08583    78    HCFGPRGLhKRKFCAVCRKVLEA--------PALHCEVCELHLHPDC 116  

                   aekvpaqshksglsC<-*
                   ++++ +       +C   
     ff08583   117 VPFACS-------DC    124  

SM00109: domain 3 of 3, from 138 to 190: score 60.2, E = 2.6e-13
                   *->Hkfvfrtf...kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHk
                      H++++r  + +++++C+vCrk++++s+  a    g+rC++C+v +H 
     ff08583   138    HHHHWREGnlpSGARCEVCRKTCGSSDVLA----GVRCEWCGVQAHS 180  

                   kCaekvpaqshksglsC<-*
                    C++ +++        C   
     ff08583   181 LCSAALAP-------EC    190  

SM00314: domain 1 of 1, from 351 to 450: score 97.7, E = 1.4e-24
                   *->dtyvlrVyvddlsavdpgqtyktlrvskrtTardViqqllekfhltd
                      +++vl++y+++l+   +g++y+++rv++++Tar V+ ++l  +++++
     ff08583   351    AQEVLKIYPGWLK---VGVAYVSVRVTPKSTARSVVLEVLPLLGRQA 394  

                   edpeeYvLvevlp.sggkErvLlddenPlqlqklwprdaks.prqsslrF
                   e+pe+++Lvev ++++++ r++l+de+Pl +++ + r+ +s ++ s++rF
     ff08583   395 ESPESFQLVEVAMgCRHVQRTMLMDEQPLLDRLQDIRQ-MSvRQVSQTRF 443  

                   vLrkrdd<-*
                   ++ + +d   
     ff08583   444 YVAESRD    450  

SM00046: domain 1 of 1, from 531 to 658: score 227.4, E = 1.2e-63
                   *->plLVfvNPkSGggqgeellkseskllrkfrelLnprqVfdltktggp
                      plLVfvNPkSGg +g        +ll++fr+lLnp+qVfdlt+ ggp
     ff08583   531    PLLVFVNPKSGGLKGR-------DLLCSFRKLLNPHQVFDLTN-GGP 569  

                   dvglelefrdvpkfkeqsdqkgddrvlvcGGDGTvgwVlnaldkrelplq
                    +gl+l f++vp+f          rvlvcGGDGTvgwVl al++++ +l+
     ff08583   570 LPGLHL-FSQVPCF----------RVLVCGGDGTVGWVLGALEETRYRLA 608  

                   cqvedrefpePPvailPlGTGNdLarvLgwgggydginekllkilkeale
                   c       peP vailPlGTGNdL rvL+wg+gy+g  e + ++l+++  
     ff08583   609 C-------PEPSVAILPLGTGNDLGRVLRWGAGYSG--EDPFSVLLSVD- 648  

                   eadtvkldrW<-*
                   ead v++drW   
     ff08583   649 EADAVLMDRW    658  

SM00045: domain 1 of 1, from 684 to 836: score 312.2, E = 3.5e-89
                   *->iMNNYFSiGvDAkiaLeFHnsREanPekFnSRlkNKlwYfelGtkel
                      +M+NY++iG+DA+ +L+FH++RE++P kF+SRl+NK +Y+++G++++
     ff08583   684    QMSNYCGIGIDAELSLDFHQAREEEPGKFTSRLHNKGVYVRVGLQKI 730  

                   fartcKdLheqIeLecDGvdidlpnkdlslEGIivLNIPSygGGtnLWGe
                     +++++Lh+qI+L++++++++lp    s+EG+i++NIPS+g+G++LWG+
     ff08583   731 --SHSRSLHKQIRLQVERQEVELP----SIEGLIFINIPSWGSGADLWGS 774  

                   PfgskkkravcgifkksftdkedlnfekqsidDgllEVVGvtgamhmaqv
                                       ++d++fek+++dDgllEVVGvtg++hm+qv
     ff08583   775 --------------------DSDTRFEKPRMDDGLLEVVGVTGVVHMGQV 804  

                   rtsiqvglasiilvkllKgrRiaQCsevrlkdtiltkktiPmQVDGEP<-
                       q gl+s        g+RiaQ+s++r+  t+l  k++P+QVDGEP  
     ff08583   805 ----QGGLRS--------GIRIAQGSYFRV--TLL--KATPVQVDGEP   836  

                   *
                    
     ff08583     -   -    

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