hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-04221544/chunk_1/iprscan-20080809-04221544.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff08696 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06512.3.fs Sodium ion transport-associated 440.6 1.6e-183 1 PF00520.21.fs Ion transport protein 512.9 3.4e-151 3 PF00520.21.ls Ion transport protein 467.8 1.2e-137 2 PF06512.3.ls Sodium ion transport-associated 442.3 5.7e-130 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00520.21.fs 1/3 164 431 .. 1 224 [] 247.7 2.3e-71 PF00520.21.ls 1/2 164 431 .. 1 224 [] 249.5 6.5e-72 PF00520.21.fs 2/3 800 989 .. 1 224 [] 216.5 5.5e-62 PF00520.21.ls 2/2 800 989 .. 1 224 [] 218.3 1.6e-62 PF06512.3.fs 1/1 1002 1225 .. 1 278 [] 440.6 1.6e-183 PF06512.3.ls 1/1 1002 1225 .. 1 278 [] 442.3 5.7e-130 PF00520.21.fs 3/3 1251 1302 .. 1 59 [. 48.7 2.9e-13 Alignments of top-scoring domains: PF00520.21.fs: domain 1 of 3, from 164 to 431: score 247.7, E = 2.3e-71 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl ++y ft+i+t+E l+ki+a+gf+l+ f++lr+pwN+lDf v+ ff08696 164 NVEYTFTGIYTFESLIKILARGFCLE---DFTFLRDPWNWLDFTVIT 207 pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR +++++ +++l g++s+lr++R+lR ff08696 208 FAYVTEFVDL------------------------GNVSALRTFRVLR--- 230 llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig l++i+++pg l+t+ +++l++s+k+l +v++l++++l +Fa+ig ff08696 231 ALKTISVIPG-----LKTI--VGALIQSVKKLSDVMILTVFCLSVFALIG 273 vqlFggklnkcc...................................... +qlF+g+l+ +c +++++++ + + ++ +++ ++++++ + + + ++ ff08696 274 LQLFMGNLRNKClqwppdnssfeinitsffnnsldgngttfnrtvsifnw 323 ..........................................npingntn ++ +++++ ++ ++ ++++++ + ++++ + + + np++g+t+ ff08696 324 deyiedkshfyflegqndallcgnssdagqcpegyicvkagrNPNYGYTS 373 FdsfgnaflwlFqtmTteGwgdvmpdtl.agtvlgyiyfvsfiilgsfll Fd+f +afl+lF++mT+++w+++++ tl+a + ++i+fv++i+lgsf+l ff08696 374 FDTFSWAFLSLFRLMTQDFWENLYQLTLrAAGKTYMIFFVLVIFLGSFYL 423 lNLfiavi<-* +NL++av+ ff08696 424 INLILAVV 431 PF00520.21.ls: domain 1 of 2, from 164 to 431: score 249.5, E = 6.5e-72 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl ++y ft+i+t+E l+ki+a+gf+l+ f++lr+pwN+lDf v+ ff08696 164 NVEYTFTGIYTFESLIKILARGFCLE---DFTFLRDPWNWLDFTVIT 207 pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR +++++ +++l g++s+lr++R+lR ff08696 208 FAYVTEFVDL------------------------GNVSALRTFRVLR--- 230 llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig l++i+++pg l+t+ +++l++s+k+l +v++l++++l +Fa+ig ff08696 231 ALKTISVIPG-----LKTI--VGALIQSVKKLSDVMILTVFCLSVFALIG 273 vqlFggklnkcc...................................... +qlF+g+l+ +c +++++++ + + ++ +++ ++++++ + + + ++ ff08696 274 LQLFMGNLRNKClqwppdnssfeinitsffnnsldgngttfnrtvsifnw 323 ..........................................npingntn ++ +++++ ++ ++ ++++++ + ++++ + + + np++g+t+ ff08696 324 deyiedkshfyflegqndallcgnssdagqcpegyicvkagrNPNYGYTS 373 FdsfgnaflwlFqtmTteGwgdvmpdtl.agtvlgyiyfvsfiilgsfll Fd+f +afl+lF++mT+++w+++++ tl+a + ++i+fv++i+lgsf+l ff08696 374 FDTFSWAFLSLFRLMTQDFWENLYQLTLrAAGKTYMIFFVLVIFLGSFYL 423 lNLfiavi<-* +NL++av+ ff08696 424 INLILAVV 431 PF00520.21.fs: domain 2 of 3, from 800 to 989: score 216.5, E = 5.5e-62 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl + ++vft+iFt+Em+lkiia+ + ++Y++ +wNi+D ++v ff08696 800 VGNLVFTGIFTAEMFLKIIAMDP-------YYYFQEGWNIFDGFIVS 839 pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR +sl++l l+ ++g lsvlr++RllR ff08696 840 LSLMELGLANVEG-----------------------LSVLRSFRLLR--- 863 llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig +++l++ +p+ l++l ++++g+s+++l+n++l+l++++fiFa++g ff08696 864 VFKLAKSWPT-----LNML--IKIIGNSVGALGNLTLVLAIIVFIFAVVG 906 vqlFggklnkcc.....npingntnFdsfgnaflwlFqtmTteGwgdvmp +qlFg+ +++c+++ +++++ +++++++f+++fl +F+++++e w++ m+ ff08696 907 MQLFGKSYKECVckisnDCELPRWHMHDFFHSFLIVFRVLCGE-WIETMW 955 dtl..agtvlgyiyfvsfiilgsflllNLfiavi<-* d+++ ag + + ++f++++++g++++lNLf+a++ ff08696 956 DCMevAGQTMCLTVFMMVMVIGNLVVLNLFLALL 989 PF00520.21.ls: domain 2 of 2, from 800 to 989: score 218.3, E = 1.6e-62 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl + ++vft+iFt+Em+lkiia+ + ++Y++ +wNi+D ++v ff08696 800 VGNLVFTGIFTAEMFLKIIAMDP-------YYYFQEGWNIFDGFIVS 839 pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR +sl++l l+ ++g lsvlr++RllR ff08696 840 LSLMELGLANVEG-----------------------LSVLRSFRLLR--- 863 llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig +++l++ +p+ l++l ++++g+s+++l+n++l+l++++fiFa++g ff08696 864 VFKLAKSWPT-----LNML--IKIIGNSVGALGNLTLVLAIIVFIFAVVG 906 vqlFggklnkcc.....npingntnFdsfgnaflwlFqtmTteGwgdvmp +qlFg+ +++c+++ +++++ +++++++f+++fl +F+++++e w++ m+ ff08696 907 MQLFGKSYKECVckisnDCELPRWHMHDFFHSFLIVFRVLCGE-WIETMW 955 dtl..agtvlgyiyfvsfiilgsflllNLfiavi<-* d+++ ag + + ++f++++++g++++lNLf+a++ ff08696 956 DCMevAGQTMCLTVFMMVMVIGNLVVLNLFLALL 989 PF06512.3.fs: domain 1 of 1, from 1002 to 1225: score 440.6, E = 1.6e-183 *->DGEmekNNLQIAvaRIkrGIafVkshKrtlrefickkFlrrk...ne D+++e+NNLQIAv+R+++GI+fV Kr++refi+k+F+r+++ +e ff08696 1002 DDDNEMNNLQIAVGRMQKGIDFV---KRKIREFIQKAFVRKQkalDE 1045 pkpkeateskklscagnnkde.itpelrklplarKenpgdkttsgiggqv +kp+e+++ kk+sc++n++ ++i ++l++l K+ g++ttsgig++v ff08696 1046 IKPLEDLNNKKDSCISNHTTIeIGKDLNYL----KD--GNGTTSGIGSSV 1089 gvpktlGvrddetvLvPiaeeeDdmefigndsslgtsqespVGesqfedl +++ + +e+D+m+fi n++sl+++++++VGes+fe+l ff08696 1090 EKY--------------VVDESDYMSFI-NNPSLTVTVPIAVGESDFENL 1124 ptenkretssdaesvetevfSeedlelsiqdskkklDatSsAPGCGETPE +te e++Se+d e +sk+kl+atS ff08696 1125 NTE--------------EFSSESDME----ESKEKLNATS---------- 1146 DSsSEGSTvDyllkpedpeEeeqVEtvEpkE.ldPEaCFTEGCVrRFPCC sSEGSTvD +++ p+E+eq ++vEp+E+l+PEaCFTE+CVr+F+CC ff08696 1147 --SSEGSTVD--IGA--PAEGEQ-PEVEPEEsLEPEACFTEDCVRKFKCC 1189 qVditeGpGKiWWnLRKTCYrIVEHsWFETFIIFMI<-* q++i+eG+GK+WWnLRKTCY+IVEH+WFETFI+FMI ff08696 1190 QISIEEGKGKLWWNLRKTCYKIVEHNWFETFIVFMI 1225 PF06512.3.ls: domain 1 of 1, from 1002 to 1225: score 442.3, E = 5.7e-130 *->DGEmekNNLQIAvaRIkrGIafVkshKrtlrefickkFlrrk...ne D+++e+NNLQIAv+R+++GI+fV Kr++refi+k+F+r+++ +e ff08696 1002 DDDNEMNNLQIAVGRMQKGIDFV---KRKIREFIQKAFVRKQkalDE 1045 pkpkeateskklscagnnkde.itpelrklplarKenpgdkttsgiggqv +kp+e+++ kk+sc++n++ ++i ++l++l K+ g++ttsgig++v ff08696 1046 IKPLEDLNNKKDSCISNHTTIeIGKDLNYL----KD--GNGTTSGIGSSV 1089 gvpktlGvrddetvLvPiaeeeDdmefigndsslgtsqespVGesqfedl +++ + +e+D+m+fi n++sl+++++++VGes+fe+l ff08696 1090 EKY--------------VVDESDYMSFI-NNPSLTVTVPIAVGESDFENL 1124 ptenkretssdaesvetevfSeedlelsiqdskkklDatSsAPGCGETPE +te e++Se+d e +sk+kl+atS ff08696 1125 NTE--------------EFSSESDME----ESKEKLNATS---------- 1146 DSsSEGSTvDyllkpedpeEeeqVEtvEpkE.ldPEaCFTEGCVrRFPCC sSEGSTvD +++ p+E+eq ++vEp+E+l+PEaCFTE+CVr+F+CC ff08696 1147 --SSEGSTVD--IGA--PAEGEQ-PEVEPEEsLEPEACFTEDCVRKFKCC 1189 qVditeGpGKiWWnLRKTCYrIVEHsWFETFIIFMI<-* q++i+eG+GK+WWnLRKTCY+IVEH+WFETFI+FMI ff08696 1190 QISIEEGKGKLWWNLRKTCYKIVEHNWFETFIVFMI 1225 PF00520.21.fs: domain 3 of 3, from 1251 to 1302: score 48.7, E = 2.9e-13 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl ++d vft iF+lEmllk++a+gf + Y++++w++lDfl+v ff08696 1251 YADKVFTYIFILEMLLKWVAYGF-------QVYFTNAWCWLDFLIVD 1290 pslislilsllg<-* +s++ ++ + g ff08696 1291 VSMLHFAALFIG 1302 //