hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-04295377/chunk_1/iprscan-20080809-04295377.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff09145 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00063.11.fs Myosin head (motor domain) 616.6 2e-182 1 PF01843.9.ls DIL domain 200.7 3.2e-57 1 PF01843.9.fs DIL domain 198.7 1.2e-56 1 PF00612.17.ls IQ calmodulin-binding motif 173.1 6.3e-49 6 PF00612.17.fs IQ calmodulin-binding motif 161.2 3.9e-47 6 PF00063.11.ls Myosin head (motor domain) 143.9 3.9e-40 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00063.11.ls 1/1 1 332 [. 1 791 [] 143.9 3.9e-40 PF00063.11.fs 1/1 9 332 .. 427 791 .] 616.6 2e-182 PF00612.17.fs 1/6 348 368 .. 1 21 [] 25.4 1.6e-06 PF00612.17.ls 1/6 348 368 .. 1 21 [] 27.4 4.6e-05 PF00612.17.ls 2/6 371 391 .. 1 21 [] 26.7 7.4e-05 PF00612.17.fs 2/6 371 391 .. 1 21 [] 24.7 2.6e-06 PF00612.17.fs 3/6 396 416 .. 1 21 [] 33.2 7.9e-09 PF00612.17.ls 3/6 396 416 .. 1 21 [] 35.2 2.1e-07 PF00612.17.fs 4/6 419 439 .. 1 21 [] 28.5 2e-07 PF00612.17.ls 4/6 419 439 .. 1 21 [] 30.5 5.4e-06 PF00612.17.fs 5/6 444 464 .. 1 21 [] 29.8 8.1e-08 PF00612.17.ls 5/6 444 464 .. 1 21 [] 31.8 2.2e-06 PF00612.17.fs 6/6 467 487 .. 1 21 [] 19.5 9.8e-05 PF00612.17.ls 6/6 467 487 .. 1 21 [] 21.5 0.0028 PF01843.9.fs 1/1 1241 1346 .. 1 113 [] 198.7 1.2e-56 PF01843.9.ls 1/1 1241 1346 .. 1 113 [] 200.7 3.2e-57 Alignments of top-scoring domains: PF00063.11.ls: domain 1 of 1, from 1 to 332: score 143.9, E = 3.9e-40 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp t ff09145 1 -----------------------T----------------------- 1 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESGA ff09145 - -------------------------------------------------- - GKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLEA ff09145 - -------------------------------------------------- - FGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVvy K s+ ff09145 2 ----------------K----------SV--------------------- 4 QtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynPc +s+ ff09145 5 ------------------------------------------HSA----- 7 ytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGFk v ff09145 8 --V----------------------------------------------- 8 qdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrriktG ff09145 - -------------------------------------------------- - gggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsakeQ ff09145 - -------------------------------------------------- - asdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEIFaekN k++sfIGvLDIyGFE F e+N ff09145 9 -----------------------------KQHSFIGVLDIYGFETF-EIN 28 SFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqaci SFEQ+cINY+NEKLQQ+FN+h+FklEQEEY++E+I+Wt Id+ +Dnq+ci ff09145 29 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDF-YDNQPCI 77 dLIEkKkPpGIlslLDEeCrfPkatDqtFldKLlqtfsskhprlthFAqk +LIE+K +GIl lLDEeC++Pk+tD+t+++KL++t+++k++ +F +k ff09145 78 NLIESK--LGILDLLDEECKMPKGTDDTWAQKLYNTHLNKCA---LF-EK 121 pgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddlisllks p r ++++Fii H+A +VeY++egfleKNkD++f++ i++lks ff09145 122 P-R-------LSNKAFIIQHFADKVEYQCEGFLEKNKDTVFEEQIKVLKS 163 SsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksaklgsgkg S+ + l+eLF+++e+ +++p++++ + + + ++++ak+ +g++ ff09145 164 SKF-KMLPELFQDDEK-------AISPTSATSSGRTPLTRTPAKPTKGRP 205 ksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNekKkag ++ k+++ +Tvg+qf++sl+ Lm+tL++t +PH+vRCIKPN+ K + ff09145 206 GQMAKEHK-KTVGHQFRNSLHLLMETLNAT---TPHYVRCIKPNDFKFPF 251 qFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLapktwp +FD++++ +Qlr++GvLE +iRi+ aGFP+R+t++eF++RYr+L++++ + ff09145 252 TFDEKRAVQQLRACGVLE-TIRISAAGFPSRWTYQEFFSRYRVLMKQKDV 300 sgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR<-* + d k+ c+++L++l +lDk++y+fGkTKiFfR ff09145 301 LS-------DRKQTCKNVLEKL-----ILDKDKYQFGKTKIFFR 332 PF00063.11.fs: domain 1 of 1, from 9 to 332: score 616.6, E = 2e-182 *->ktasfIGvLDIyGFEIFaekNSFEQLcINYvNEKLQQfFNhhmFklE k++sfIGvLDIyGFE F e+NSFEQ+cINY+NEKLQQ+FN+h+FklE ff09145 9 KQHSFIGVLDIYGFETF-EINSFEQFCINYANEKLQQQFNMHVFKLE 54 QEEYkrEgIeWtfIdyglDnqacidLIEkKkPpGIlslLDEeCrfPkatD QEEY++E+I+Wt Id+ +Dnq+ci+LIE+K +GIl lLDEeC++Pk+tD ff09145 55 QEEYMKEQIPWTLIDF-YDNQPCINLIESK--LGILDLLDEECKMPKGTD 101 qtFldKLlqtfsskhprlthFAqkpgrfkkgksrqgkteFiikHYAGdVe +t+++KL++t+++k++ +F +kp r ++++Fii H+A +Ve ff09145 102 DTWAQKLYNTHLNKCA---LF-EKP-R-------LSNKAFIIQHFADKVE 139 YnaegfleKNkDpLfddlisllksSsdepllaeLFpeeelseAaNltlka Y++egfleKNkD++f++ i++lksS+ + l+eLF+++e+ +++ ff09145 140 YQCEGFLEKNKDTVFEEQIKVLKSSKF-KMLPELFQDDEK-------AIS 181 pdfeadfdeeeaaaksaklgsgkgksgkkknfleTvgsqfkeslgeLmkt p++++ + + + ++++ak+ +g++++ k+++ +Tvg+qf++sl+ Lm+t ff09145 182 PTSATSSGRTPLTRTPAKPTKGRPGQMAKEHK-KTVGHQFRNSLHLLMET 230 LsstAnlnPHfvRCIKPNekKkagqFDaslVlhQlrclGvLEigiRirra L++t +PH+vRCIKPN+ K + +FD++++ +Qlr++GvLE +iRi+ a ff09145 231 LNAT---TPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLE-TIRISAA 276 GFPnRitfdeFlqRYrlLapktwpsgfrpewvgdakkgceliLqslrqtp GFP+R+t++eF++RYr+L++++ + + d k+ c+++L++l ff09145 277 GFPSRWTYQEFFSRYRVLMKQKDVLS-------DRKQTCKNVLEKL---- 315 gnlDkeeyrfGkTKiFfR<-* +lDk++y+fGkTKiFfR ff09145 316 -ILDKDKYQFGKTKIFFR 332 PF00612.17.fs: domain 1 of 6, from 348 to 368: score 25.4, E = 1.6e-06 *->rraaikIQaawRGylaRkryk<-* r+a i+IQ+ +RG+l Rk+y ff09145 348 RAACIRIQKTIRGWLLRKKYL 368 PF00612.17.ls: domain 1 of 6, from 348 to 368: score 27.4, E = 4.6e-05 *->rraaikIQaawRGylaRkryk<-* r+a i+IQ+ +RG+l Rk+y ff09145 348 RAACIRIQKTIRGWLLRKKYL 368 PF00612.17.ls: domain 2 of 6, from 371 to 391: score 26.7, E = 7.4e-05 *->rraaikIQaawRGylaRkryk<-* r+aai++Q+++RGy+aR + k ff09145 371 RKAAITMQRYVRGYQARCYAK 391 PF00612.17.fs: domain 2 of 6, from 371 to 391: score 24.7, E = 2.6e-06 *->rraaikIQaawRGylaRkryk<-* r+aai++Q+++RGy+aR + k ff09145 371 RKAAITMQRYVRGYQARCYAK 391 PF00612.17.fs: domain 3 of 6, from 396 to 416: score 33.2, E = 7.9e-09 *->rraaikIQaawRGylaRkryk<-* ++aa++IQ++wR+y++R+ryk ff09145 396 TKAATIIQKYWRMYVVRRRYK 416 PF00612.17.ls: domain 3 of 6, from 396 to 416: score 35.2, E = 2.1e-07 *->rraaikIQaawRGylaRkryk<-* ++aa++IQ++wR+y++R+ryk ff09145 396 TKAATIIQKYWRMYVVRRRYK 416 PF00612.17.fs: domain 4 of 6, from 419 to 439: score 28.5, E = 2e-07 *->rraaikIQaawRGylaRkryk<-* r+a i++Q++ RG+laR ry+ ff09145 419 RAATIVLQSYLRGFLARNRYR 439 PF00612.17.ls: domain 4 of 6, from 419 to 439: score 30.5, E = 5.4e-06 *->rraaikIQaawRGylaRkryk<-* r+a i++Q++ RG+laR ry+ ff09145 419 RAATIVLQSYLRGFLARNRYR 439 PF00612.17.fs: domain 5 of 6, from 444 to 464: score 29.8, E = 8.1e-08 *->rraaikIQaawRGylaRkryk<-* ++ a++IQ+++RG+laR +yk ff09145 444 EHKAVIIQKRVRGWLARTHYK 464 PF00612.17.ls: domain 5 of 6, from 444 to 464: score 31.8, E = 2.2e-06 *->rraaikIQaawRGylaRkryk<-* ++ a++IQ+++RG+laR +yk ff09145 444 EHKAVIIQKRVRGWLARTHYK 464 PF00612.17.fs: domain 6 of 6, from 467 to 487: score 19.5, E = 9.8e-05 *->rraaikIQaawRGylaRkryk<-* +a+i +Q+++R+++a++++k ff09145 467 MHAIIYLQCCFRRMMAKRELK 487 PF00612.17.ls: domain 6 of 6, from 467 to 487: score 21.5, E = 0.0028 *->rraaikIQaawRGylaRkryk<-* +a+i +Q+++R+++a++++k ff09145 467 MHAIIYLQCCFRRMMAKRELK 487 PF01843.9.fs: domain 1 of 1, from 1241 to 1346: score 198.7, E = 1.2e-56 *->qlfkQlFsfiNaqlfNsLllrrdaacCswsrGmqirynlsqLeeWcr q++kQ+F+ i+a+++N+Lllr+d +Csws+Gmqiryn+sqLeeW+r ff09145 1241 QVVKQMFYIIGAITLNNLLLRKD--MCSWSKGMQIRYNVSQLEEWLR 1285 eagledagdLawdeLeplrQavqLLqvkkktkedisldeiicdlCpaLnp +++l+++g a+++Lepl+Qa+qLLqvkkkt++d+ e+ic++C aL++ ff09145 1286 DKNLMNSG--AKETLEPLIQAAQLLQVKKKTDDDA---EAICSMCNALTT 1330 aQlykiLtlYkpddye<-* aQ++k+L+lY+p +++ ff09145 1331 AQIVKVLNLYTPVNEF 1346 PF01843.9.ls: domain 1 of 1, from 1241 to 1346: score 200.7, E = 3.2e-57 *->qlfkQlFsfiNaqlfNsLllrrdaacCswsrGmqirynlsqLeeWcr q++kQ+F+ i+a+++N+Lllr+d +Csws+Gmqiryn+sqLeeW+r ff09145 1241 QVVKQMFYIIGAITLNNLLLRKD--MCSWSKGMQIRYNVSQLEEWLR 1285 eagledagdLawdeLeplrQavqLLqvkkktkedisldeiicdlCpaLnp +++l+++g a+++Lepl+Qa+qLLqvkkkt++d+ e+ic++C aL++ ff09145 1286 DKNLMNSG--AKETLEPLIQAAQLLQVKKKTDDDA---EAICSMCNALTT 1330 aQlykiLtlYkpddye<-* aQ++k+L+lY+p +++ ff09145 1331 AQIVKVLNLYTPVNEF 1346 //