hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-04295377/chunk_1/iprscan-20080809-04295377.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff09145 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00015 164.3 1.2e-44 6 SM00242 144.0 1.5e-38 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00242 1/1 2 345 .. 1 771 [] 144.0 1.5e-38 SM00015 1/6 346 368 .. 1 23 [] 30.0 0.00034 SM00015 2/6 369 391 .. 1 23 [] 27.8 0.0015 SM00015 3/6 394 416 .. 1 23 [] 36.9 2.7e-06 SM00015 4/6 417 439 .. 1 23 [] 27.3 0.0022 SM00015 5/6 442 464 .. 1 23 [] 31.0 0.00016 SM00015 6/6 465 487 .. 1 23 [] 11.4 19 Alignments of top-scoring domains: SM00242: domain 1 of 1, from 2 to 345: score 144.0, E = 1.5e-38 *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav ff09145 - ----------------------------------------------- - NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre k + ff09145 2 ---KSV------------H------------------------------- 5 keNQsIiISGESGAGKTEatKkimqYLAavsgsvesvedqiLesNPiLEA ff09145 - -------------------------------------------------- - FGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQakg ff09145 - -------------------------------------------------- - ERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfankrys s ++q ff09145 6 ------------------------SA----------VKQ----------- 10 sgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAILHLG + ff09145 11 ----------------H--------------------------------- 11 NieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLtkRki ff09145 - -------------------------------------------------- - ktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINkslsayf +f ff09145 12 ------------------------------------------------SF 13 IGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhvFKlEQEEYerEGI IGVLDIyGFE Fe NSFEQfCINyaNEKLQQ+Fn hvFKlEQEEY++E+I ff09145 14 IGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQI 63 eWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeClfHAqPkgTDqtF +Wt IdF+ DNQpci+LIE K lGIl+lLDEeC++ PkgTD+t+ ff09145 64 PWTLIDFY--DNQPCINLIESK----LGILDLLDEECKM---PKGTDDTW 104 leKLnkalyhqhhkkhphfskprkSlkkgkpkkrfgrtaFiikHYAGdVt ++KL y++h++k f+kp r ++ aFii+H+A +V+ ff09145 105 AQKL----YNTHLNKCALFEKP-----------RLSNKAFIIQHFADKVE 139 YnveGFLeKNkDtLfedlieLlqsSknpliasLFpeeadqsssaakekss Y++eGFLeKNkDt+fe+ i +l+sSk++ + +LF++++ + s ++ +s+ ff09145 140 YQCEGFLEKNKDTVFEEQIKVLKSSKFKMLPELFQDDEKAISPTSATSSG 189 ggagksrkagr.r.eps.kgt.i.sskkrppTvGsqFk.sLneLmetLns r++ ++ ++ +kg + ++ k +++TvG qF++sL LmetLn+ ff09145 190 ------RTPLTrTpAKPtKGRpGqMAKEHKKTVGHQFRnSLHLLMETLNA 233 tnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEniRIRraGFPyRlp t+PH++RCIKPN+ K p++Fd+++ +QLr++GvLE+iRI+ aGFP+R++ ff09145 234 TTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLETIRISAAGFPSRWT 283 fdeFlqRYkvLlpktwppwggewknrlfgdakkacealLqslglgiegdn ++eF+ RY+vL++++ +d k+ c+++L++l+ ff09145 284 YQEFFSRYRVLMKQKDVL----------SDRKQTCKNVLEKLI------- 316 ldeeeyqiGkTKvFlRnpgqlaeLEelRee<-* ld+++yq+GkTK+F+R +gq+a+LE+lR ff09145 317 LDKDKYQFGKTKIFFR-AGQVAYLEKLRAD 345 SM00015: domain 1 of 6, from 346 to 368: score 30.0, E = 0.00034 *->rleraAiiIQaawRGylaRkryk<-* +l++a i+IQ+++RG+l Rk+y ff09145 346 KLRAACIRIQKTIRGWLLRKKYL 368 SM00015: domain 2 of 6, from 369 to 391: score 27.8, E = 0.0015 *->rleraAiiIQaawRGylaRkryk<-* r+++aAi +Q+++RGy+aR+ k ff09145 369 RMRKAAITMQRYVRGYQARCYAK 391 SM00015: domain 3 of 6, from 394 to 416: score 36.9, E = 2.7e-06 *->rleraAiiIQaawRGylaRkryk<-* r+++aA+iIQ++wR+y++R+ryk ff09145 394 RRTKAATIIQKYWRMYVVRRRYK 416 SM00015: domain 4 of 6, from 417 to 439: score 27.3, E = 0.0022 *->rleraAiiIQaawRGylaRkryk<-* +++a i++Q++ RG+laR ry+ ff09145 417 IRRAATIVLQSYLRGFLARNRYR 439 SM00015: domain 5 of 6, from 442 to 464: score 31.0, E = 0.00016 *->rleraAiiIQaawRGylaRkryk<-* +e+ A+iIQ+++RG+laR +yk ff09145 442 LREHKAVIIQKRVRGWLARTHYK 464 SM00015: domain 6 of 6, from 465 to 487: score 11.4, E = 19 *->rleraAiiIQaawRGylaRkryk<-* r +a+i +Q ++R+ +a ++ k ff09145 465 RSMHAIIYLQCCFRRMMAKRELK 487 //