# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Off09358.fasta.nr -Q ff09358.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ff09358, 1147 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6824402 sequences Expectation_n fit: rho(ln(x))= 5.1625+/-0.000185; mu= 14.4552+/- 0.010 mean_var=74.9882+/-14.435, 0's: 34 Z-trim: 34 B-trim: 0 in 0/67 Lambda= 0.148108 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62088592|dbj|BAD92743.1| huntingtin variant [Ho (1147) 7458 1603.9 0 gi|119602880|gb|EAW82474.1| huntingtin (Huntington (2597) 7289 1568.0 0 gi|119602881|gb|EAW82475.1| huntingtin (Huntington (3012) 7289 1568.1 0 gi|119602884|gb|EAW82478.1| huntingtin (Huntington (3014) 7289 1568.1 0 gi|1170192|sp|P42858|HD_HUMAN Huntingtin (Huntingt (3144) 7289 1568.1 0 gi|4586876|dbj|BAA36753.1| huntingtin [Homo sapien (3144) 7275 1565.1 0 gi|114592976|ref|XP_517080.2| PREDICTED: huntingti (3149) 7244 1558.5 0 gi|194209359|ref|XP_001488843.2| PREDICTED: simila (3100) 7019 1510.4 0 gi|108994114|ref|XP_001086119.1| PREDICTED: huntin (3133) 7007 1507.9 0 gi|73951765|ref|XP_536221.2| PREDICTED: similar to (3130) 6918 1488.8 0 gi|149047410|gb|EDM00080.1| Huntington disease gen (3120) 6844 1473.0 0 gi|1708162|sp|P51111.1|HD_RAT Huntingtin (Huntingt (3110) 6802 1464.1 0 gi|119894330|ref|XP_871851.2| PREDICTED: similar t (3131) 6791 1461.7 0 gi|902004|gb|AAC52218.1| huntingtin (3119) 6787 1460.8 0 gi|1708161|sp|P42859.2|HD_MOUSE Huntingtin (Huntin (3119) 6787 1460.8 0 gi|148705520|gb|EDL37467.1| Huntington disease gen (3120) 6787 1460.8 0 gi|148705521|gb|EDL37468.1| Huntington disease gen (3142) 6787 1460.8 0 gi|454417|gb|AAA89100.1| Huntington's Disease gene (3119) 6781 1459.6 0 gi|438805|gb|AAA37799.1| HD protein (3119) 6738 1450.4 0 gi|8918482|dbj|BAA36752.1| huntingtin [Sus scrofa] (3139) 6688 1439.7 0 gi|126331967|ref|XP_001364862.1| PREDICTED: simila (3135) 6568 1414.1 0 gi|118090770|ref|XP_420822.2| PREDICTED: similar t (3095) 6343 1366.0 0 gi|119602882|gb|EAW82476.1| huntingtin (Huntington (2531) 5984 1289.2 0 gi|148705522|gb|EDL37469.1| Huntington disease gen (1547) 5595 1205.9 0 gi|438807|gb|AAA37800.1| HD protein (2639) 5571 1201.0 0 gi|2981139|gb|AAC63983.1| huntingtin [Danio rerio] (3121) 3661 792.9 0 gi|1708160|sp|P51112.1|HD_FUGRU Huntingtin (Huntin (3148) 3569 773.2 0 gi|146189451|emb|CAM12495.1| Huntingtin [Branchios (3038) 3488 755.9 6.6e-215 gi|47220259|emb|CAG03293.1| unnamed protein produc (3067) 3274 710.2 3.9e-201 gi|794066|emb|CAA89024.1| cL1C2.1 (exons 30-41) [H ( 570) 2932 636.6 1.1e-179 gi|144954328|gb|ABP04240.1| huntingtin [Branchiost (3090) 2404 524.3 3.6e-145 gi|51513188|gb|AAH80340.1| Huntingtin [Xenopus tro (1148) 2233 487.4 1.7e-134 gi|146741212|emb|CAJ87484.4| huntingtin like prote (2948) 1794 394.0 5.9e-106 gi|118140644|emb|CAJ44241.1| huntingtin [Ciona int (2946) 1788 392.7 1.4e-105 gi|146189449|emb|CAM12494.1| Huntingtin [Strongylo (2840) 1398 309.3 1.7e-80 gi|156541708|ref|XP_001603778.1| PREDICTED: simila (2963) 1312 291.0 6e-75 gi|149605392|ref|XP_001518424.1| PREDICTED: simila ( 901) 1260 279.4 5.3e-72 gi|168479170|emb|CAL41292.1| huntingtin [Strongylo ( 298) 1210 268.4 3.8e-69 gi|110758031|ref|XP_001122101.1| PREDICTED: simila (2627) 1220 271.3 4.5e-69 gi|115629420|ref|XP_001199730.1| PREDICTED: simila ( 693) 1162 258.4 8.8e-66 gi|168479174|emb|CAL41294.1| huntingtin [Strongylo ( 279) 1103 245.5 2.7e-62 gi|168479156|emb|CAL41288.1| huntingtin [Strongylo ( 308) 1003 224.2 8e-56 gi|190582836|gb|EDV22908.1| hypothetical protein T (1149) 1008 225.7 1e-55 gi|168479164|emb|CAL41289.1| huntingtin [Strongylo ( 282) 950 212.8 1.9e-52 gi|168479166|emb|CAL41290.1| huntingtin [Strongylo ( 239) 911 204.4 5.4e-50 gi|189240623|ref|XP_968384.2| PREDICTED: similar t (2653) 859 194.1 7.6e-46 gi|841190|gb|AAA90987.1| Huntington gene (1497) 739 168.3 2.6e-38 gi|168479186|emb|CAL41399.1| huntingtin [Strongylo ( 256) 724 164.5 6.1e-38 gi|168479178|emb|CAL41396.1| huntingtin [Strongylo ( 310) 724 164.6 7.1e-38 gi|168479194|emb|CAL41403.1| huntingtin [Strongylo ( 294) 722 164.1 9.1e-38 >>gi|62088592|dbj|BAD92743.1| huntingtin variant [Homo s (1147 aa) initn: 7458 init1: 7458 opt: 7458 Z-score: 8603.7 bits: 1603.9 E(): 0 Smith-Waterman score: 7458; 100.000% identity (100.000% similar) in 1147 aa overlap (1-1147:1-1147) 10 20 30 40 50 60 ff0935 MYNCILSGNLSLNLDFSVFKALQQAHLLKNMSHCRQPSDSSVDKFVLRDEATEPGDQENK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 MYNCILSGNLSLNLDFSVFKALQQAHLLKNMSHCRQPSDSSVDKFVLRDEATEPGDQENK 10 20 30 40 50 60 70 80 90 100 110 120 ff0935 PCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVKALALSCVGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVKALALSCVGAA 70 80 90 100 110 120 130 140 150 160 170 180 ff0935 VALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILCGTLICSILSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILCGTLICSILSR 130 140 150 160 170 180 190 200 210 220 230 240 ff0935 SRFHVGDWMGTIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRNCVMSLCSSSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SRFHVGDWMGTIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRNCVMSLCSSSY 190 200 210 220 230 240 250 260 270 280 290 300 ff0935 SELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHRGAHHYTGLLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHRGAHHYTGLLK 250 260 270 280 290 300 310 320 330 340 350 360 ff0935 LQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVAVARDQSSVYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVAVARDQSSVYL 310 320 330 340 350 360 370 380 390 400 410 420 ff0935 KLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHELITSTTRALT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHELITSTTRALT 370 380 390 400 410 420 430 440 450 460 470 480 ff0935 FGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILTLLSSAWFPLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 FGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILTLLSSAWFPLD 430 440 450 460 470 480 490 500 510 520 530 540 ff0935 LSAHQDALILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDRALVPMVEQLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LSAHQDALILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDRALVPMVEQLF 490 500 510 520 530 540 550 560 570 580 590 600 ff0935 SHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEQASVPLSPKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEQASVPLSPKK 550 560 570 580 590 600 610 620 630 640 650 660 ff0935 GSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKVTLDLQNSTEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKVTLDLQNSTEK 610 620 630 640 650 660 670 680 690 700 710 720 ff0935 FGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCVQQLLKTLFGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 FGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCVQQLLKTLFGT 670 680 690 700 710 720 730 740 750 760 770 780 ff0935 NLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNMVQAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 NLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNMVQAE 730 740 750 760 770 780 790 800 810 820 830 840 ff0935 QENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 QENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTCV 790 800 810 820 830 840 850 860 870 880 890 900 ff0935 QLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 QLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLV 850 860 870 880 890 900 910 920 930 940 950 960 ff0935 LLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGK 910 920 930 940 950 960 970 980 990 1000 1010 1020 ff0935 ELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMLAKQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMLAKQQ 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 ff0935 MHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLWISGILAILRV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 MHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLWISGILAILRV 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 ff0935 LISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSTSTLEEHSEGKQIKNLPEETFSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSTSTLEEHSEGKQIKNLPEETFSR 1090 1100 1110 1120 1130 1140 ff0935 YAFYLSL ::::::: gi|620 YAFYLSL >>gi|119602880|gb|EAW82474.1| huntingtin (Huntington dis (2597 aa) initn: 7350 init1: 7289 opt: 7289 Z-score: 8403.7 bits: 1568.0 E(): 0 Smith-Waterman score: 7289; 99.644% identity (99.822% similar) in 1125 aa overlap (21-1145:78-1202) 10 20 30 40 50 ff0935 MYNCILSGNLSLNLDFSVFKALQQAHLLKNMSHCRQPSDSSVDKFVLRDE :::::::::::::::::::::::::::::: gi|119 LQIGQPQDEDEEATGILPDEASEAFRNSSMALQQAHLLKNMSHCRQPSDSSVDKFVLRDE 50 60 70 80 90 100 60 70 80 90 100 110 ff0935 ATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVK 110 120 130 140 150 160 120 130 140 150 160 170 ff0935 ALALSCVGAAVALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ALALSCVGAAVALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILC 170 180 190 200 210 220 180 190 200 210 220 230 ff0935 GTLICSILSRSRFHVGDWMGTIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GTLICSILSRSRFHVGDWMGTIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRN 230 240 250 260 270 280 240 250 260 270 280 290 ff0935 CVMSLCSSSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 CVMSLCSSSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHR 290 300 310 320 330 340 300 310 320 330 340 350 ff0935 GAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVA 350 360 370 380 390 400 360 370 380 390 400 410 ff0935 VARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHE 410 420 430 440 450 460 420 430 440 450 460 470 ff0935 LITSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LITSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILT 470 480 490 500 510 520 480 490 500 510 520 530 ff0935 LLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDR 530 540 550 560 570 580 540 550 560 570 580 590 ff0935 ALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGE 590 600 610 620 630 640 600 610 620 630 640 650 ff0935 QASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKV 650 660 670 680 690 700 660 670 680 690 700 710 ff0935 TLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCV 710 720 730 740 750 760 720 730 740 750 760 770 ff0935 QQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALAD 770 780 790 800 810 820 780 790 800 810 820 830 ff0935 ASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKA 830 840 850 860 870 880 840 850 860 870 880 890 ff0935 LKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEA 890 900 910 920 930 940 900 910 920 930 940 950 ff0935 IIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL 950 960 970 980 990 1000 960 970 980 990 1000 1010 ff0935 RGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD 1010 1020 1030 1040 1050 1060 1020 1030 1040 1050 1060 1070 ff0935 IILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLW 1070 1080 1090 1100 1110 1120 1080 1090 1100 1110 1120 1130 ff0935 ISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSTSTLEEHSEGKQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSTSTLEEHSEGKQI 1130 1140 1150 1160 1170 1180 1140 ff0935 KNLPEETFSRYAFYLSL ::::::::::. . : gi|119 KNLPEETFSRFLLQLVGILLEDIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGMF 1190 1200 1210 1220 1230 1240 >>gi|119602881|gb|EAW82475.1| huntingtin (Huntington dis (3012 aa) initn: 7350 init1: 7289 opt: 7289 Z-score: 8402.8 bits: 1568.1 E(): 0 Smith-Waterman score: 7289; 99.644% identity (99.822% similar) in 1125 aa overlap (21-1145:493-1617) 10 20 30 40 50 ff0935 MYNCILSGNLSLNLDFSVFKALQQAHLLKNMSHCRQPSDSSVDKFVLRDE :::::::::::::::::::::::::::::: gi|119 LQIGQPQDEDEEATGILPDEASEAFRNSSMALQQAHLLKNMSHCRQPSDSSVDKFVLRDE 470 480 490 500 510 520 60 70 80 90 100 110 ff0935 ATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVK 530 540 550 560 570 580 120 130 140 150 160 170 ff0935 ALALSCVGAAVALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ALALSCVGAAVALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILC 590 600 610 620 630 640 180 190 200 210 220 230 ff0935 GTLICSILSRSRFHVGDWMGTIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GTLICSILSRSRFHVGDWMGTIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRN 650 660 670 680 690 700 240 250 260 270 280 290 ff0935 CVMSLCSSSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 CVMSLCSSSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHR 710 720 730 740 750 760 300 310 320 330 340 350 ff0935 GAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVA 770 780 790 800 810 820 360 370 380 390 400 410 ff0935 VARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHE 830 840 850 860 870 880 420 430 440 450 460 470 ff0935 LITSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LITSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILT 890 900 910 920 930 940 480 490 500 510 520 530 ff0935 LLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDR 950 960 970 980 990 1000 540 550 560 570 580 590 ff0935 ALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGE 1010 1020 1030 1040 1050 1060 600 610 620 630 640 650 ff0935 QASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKV 1070 1080 1090 1100 1110 1120 660 670 680 690 700 710 ff0935 TLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCV 1130 1140 1150 1160 1170 1180 720 730 740 750 760 770 ff0935 QQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALAD 1190 1200 1210 1220 1230 1240 780 790 800 810 820 830 ff0935 ASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKA 1250 1260 1270 1280 1290 1300 840 850 860 870 880 890 ff0935 LKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEA 1310 1320 1330 1340 1350 1360 900 910 920 930 940 950 ff0935 IIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL 1370 1380 1390 1400 1410 1420 960 970 980 990 1000 1010 ff0935 RGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD 1430 1440 1450 1460 1470 1480 1020 1030 1040 1050 1060 1070 ff0935 IILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLW 1490 1500 1510 1520 1530 1540 1080 1090 1100 1110 1120 1130 ff0935 ISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSTSTLEEHSEGKQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSTSTLEEHSEGKQI 1550 1560 1570 1580 1590 1600 1140 ff0935 KNLPEETFSRYAFYLSL ::::::::::. . : gi|119 KNLPEETFSRFLLQLVGILLEDIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGMF 1610 1620 1630 1640 1650 1660 >>gi|119602884|gb|EAW82478.1| huntingtin (Huntington dis (3014 aa) initn: 7350 init1: 7289 opt: 7289 Z-score: 8402.8 bits: 1568.1 E(): 0 Smith-Waterman score: 7289; 99.644% identity (99.822% similar) in 1125 aa overlap (21-1145:495-1619) 10 20 30 40 50 ff0935 MYNCILSGNLSLNLDFSVFKALQQAHLLKNMSHCRQPSDSSVDKFVLRDE :::::::::::::::::::::::::::::: gi|119 LQIGQPQDEDEEATGILPDEASEAFRNSSMALQQAHLLKNMSHCRQPSDSSVDKFVLRDE 470 480 490 500 510 520 60 70 80 90 100 110 ff0935 ATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVK 530 540 550 560 570 580 120 130 140 150 160 170 ff0935 ALALSCVGAAVALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ALALSCVGAAVALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILC 590 600 610 620 630 640 180 190 200 210 220 230 ff0935 GTLICSILSRSRFHVGDWMGTIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GTLICSILSRSRFHVGDWMGTIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRN 650 660 670 680 690 700 240 250 260 270 280 290 ff0935 CVMSLCSSSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 CVMSLCSSSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHR 710 720 730 740 750 760 300 310 320 330 340 350 ff0935 GAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVA 770 780 790 800 810 820 360 370 380 390 400 410 ff0935 VARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHE 830 840 850 860 870 880 420 430 440 450 460 470 ff0935 LITSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LITSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILT 890 900 910 920 930 940 480 490 500 510 520 530 ff0935 LLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDR 950 960 970 980 990 1000 540 550 560 570 580 590 ff0935 ALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGE 1010 1020 1030 1040 1050 1060 600 610 620 630 640 650 ff0935 QASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKV 1070 1080 1090 1100 1110 1120 660 670 680 690 700 710 ff0935 TLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCV 1130 1140 1150 1160 1170 1180 720 730 740 750 760 770 ff0935 QQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALAD 1190 1200 1210 1220 1230 1240 780 790 800 810 820 830 ff0935 ASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKA 1250 1260 1270 1280 1290 1300 840 850 860 870 880 890 ff0935 LKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEA 1310 1320 1330 1340 1350 1360 900 910 920 930 940 950 ff0935 IIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL 1370 1380 1390 1400 1410 1420 960 970 980 990 1000 1010 ff0935 RGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD 1430 1440 1450 1460 1470 1480 1020 1030 1040 1050 1060 1070 ff0935 IILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLW 1490 1500 1510 1520 1530 1540 1080 1090 1100 1110 1120 1130 ff0935 ISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSTSTLEEHSEGKQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSTSTLEEHSEGKQI 1550 1560 1570 1580 1590 1600 1140 ff0935 KNLPEETFSRYAFYLSL ::::::::::. . : gi|119 KNLPEETFSRFLLQLVGILLEDIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGMF 1610 1620 1630 1640 1650 1660 >>gi|1170192|sp|P42858|HD_HUMAN Huntingtin (Huntington d (3144 aa) initn: 7350 init1: 7289 opt: 7289 Z-score: 8402.6 bits: 1568.1 E(): 0 Smith-Waterman score: 7289; 99.644% identity (99.822% similar) in 1125 aa overlap (21-1145:625-1749) 10 20 30 40 50 ff0935 MYNCILSGNLSLNLDFSVFKALQQAHLLKNMSHCRQPSDSSVDKFVLRDE :::::::::::::::::::::::::::::: gi|117 LQIGQPQDEDEEATGILPDEASEAFRNSSMALQQAHLLKNMSHCRQPSDSSVDKFVLRDE 600 610 620 630 640 650 60 70 80 90 100 110 ff0935 ATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 ATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVK 660 670 680 690 700 710 120 130 140 150 160 170 ff0935 ALALSCVGAAVALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 ALALSCVGAAVALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILC 720 730 740 750 760 770 180 190 200 210 220 230 ff0935 GTLICSILSRSRFHVGDWMGTIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 GTLICSILSRSRFHVGDWMGTIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRN 780 790 800 810 820 830 240 250 260 270 280 290 ff0935 CVMSLCSSSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 CVMSLCSSSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHR 840 850 860 870 880 890 300 310 320 330 340 350 ff0935 GAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 GAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVA 900 910 920 930 940 950 360 370 380 390 400 410 ff0935 VARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 VARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHE 960 970 980 990 1000 1010 420 430 440 450 460 470 ff0935 LITSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 LITSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILT 1020 1030 1040 1050 1060 1070 480 490 500 510 520 530 ff0935 LLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 LLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDR 1080 1090 1100 1110 1120 1130 540 550 560 570 580 590 ff0935 ALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 ALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGE 1140 1150 1160 1170 1180 1190 600 610 620 630 640 650 ff0935 QASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 QASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKV 1200 1210 1220 1230 1240 1250 660 670 680 690 700 710 ff0935 TLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 TLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCV 1260 1270 1280 1290 1300 1310 720 730 740 750 760 770 ff0935 QQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 QQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALAD 1320 1330 1340 1350 1360 1370 780 790 800 810 820 830 ff0935 ASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 ASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKA 1380 1390 1400 1410 1420 1430 840 850 860 870 880 890 ff0935 LKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 LKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEA 1440 1450 1460 1470 1480 1490 900 910 920 930 940 950 ff0935 IIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 IIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL 1500 1510 1520 1530 1540 1550 960 970 980 990 1000 1010 ff0935 RGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 RGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD 1560 1570 1580 1590 1600 1610 1020 1030 1040 1050 1060 1070 ff0935 IILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 IILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLW 1620 1630 1640 1650 1660 1670 1080 1090 1100 1110 1120 1130 ff0935 ISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSTSTLEEHSEGKQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|117 ISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSTSTLEEHSEGKQI 1680 1690 1700 1710 1720 1730 1140 ff0935 KNLPEETFSRYAFYLSL ::::::::::. . : gi|117 KNLPEETFSRFLLQLVGILLEDIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGMF 1740 1750 1760 1770 1780 1790 >>gi|4586876|dbj|BAA36753.1| huntingtin [Homo sapiens] (3144 aa) initn: 7336 init1: 7275 opt: 7275 Z-score: 8386.4 bits: 1565.1 E(): 0 Smith-Waterman score: 7275; 99.556% identity (99.733% similar) in 1125 aa overlap (21-1145:625-1749) 10 20 30 40 50 ff0935 MYNCILSGNLSLNLDFSVFKALQQAHLLKNMSHCRQPSDSSVDKFVLRDE :::::::::::::::::::::::::::::: gi|458 LQIGQPQDEDEEATGILPDEASEAFRNSSMALQQAHLLKNMSHCRQPSDSSVDKFVLRDE 600 610 620 630 640 650 60 70 80 90 100 110 ff0935 ATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 ATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVK 660 670 680 690 700 710 120 130 140 150 160 170 ff0935 ALALSCVGAAVALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 ALALSCVGAAVALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILC 720 730 740 750 760 770 180 190 200 210 220 230 ff0935 GTLICSILSRSRFHVGDWMGTIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRN :::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::: gi|458 GTLICSILSRSRFHVGDWMGTIRTLTGNTFSLADCIPLLRKTLKDESSVTSKLACTAVRN 780 790 800 810 820 830 240 250 260 270 280 290 ff0935 CVMSLCSSSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 CVMSLCSSSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHR 840 850 860 870 880 890 300 310 320 330 340 350 ff0935 GAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 GAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVA 900 910 920 930 940 950 360 370 380 390 400 410 ff0935 VARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 VARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHE 960 970 980 990 1000 1010 420 430 440 450 460 470 ff0935 LITSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 LITSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILT 1020 1030 1040 1050 1060 1070 480 490 500 510 520 530 ff0935 LLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 LLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDR 1080 1090 1100 1110 1120 1130 540 550 560 570 580 590 ff0935 ALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 ALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGE 1140 1150 1160 1170 1180 1190 600 610 620 630 640 650 ff0935 QASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 QASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKV 1200 1210 1220 1230 1240 1250 660 670 680 690 700 710 ff0935 TLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 TLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCV 1260 1270 1280 1290 1300 1310 720 730 740 750 760 770 ff0935 QQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 QQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALAD 1320 1330 1340 1350 1360 1370 780 790 800 810 820 830 ff0935 ASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 ASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKA 1380 1390 1400 1410 1420 1430 840 850 860 870 880 890 ff0935 LKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 LKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEA 1440 1450 1460 1470 1480 1490 900 910 920 930 940 950 ff0935 IIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 IIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL 1500 1510 1520 1530 1540 1550 960 970 980 990 1000 1010 ff0935 RGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 RGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD 1560 1570 1580 1590 1600 1610 1020 1030 1040 1050 1060 1070 ff0935 IILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 IILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLW 1620 1630 1640 1650 1660 1670 1080 1090 1100 1110 1120 1130 ff0935 ISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSTSTLEEHSEGKQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|458 ISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSTSTLEEHSEGKQI 1680 1690 1700 1710 1720 1730 1140 ff0935 KNLPEETFSRYAFYLSL ::::::::::. . : gi|458 KNLPEETFSRFLLQLVGILLEDIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGMF 1740 1750 1760 1770 1780 1790 >>gi|114592976|ref|XP_517080.2| PREDICTED: huntingtin [P (3149 aa) initn: 7305 init1: 7244 opt: 7244 Z-score: 8350.6 bits: 1558.5 E(): 0 Smith-Waterman score: 7244; 99.200% identity (99.644% similar) in 1125 aa overlap (21-1145:625-1749) 10 20 30 40 50 ff0935 MYNCILSGNLSLNLDFSVFKALQQAHLLKNMSHCRQPSDSSVDKFVLRDE ::::::::::::: :::::::::::::::: gi|114 LQIGQSQDEDEEATGILPEEASEAFRNSSMALQQAHLLKNMSHSRQPSDSSVDKFVLRDE 600 610 620 630 640 650 60 70 80 90 100 110 ff0935 ATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVK 660 670 680 690 700 710 120 130 140 150 160 170 ff0935 ALALSCVGAAVALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ALALSCVGAAVALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILC 720 730 740 750 760 770 180 190 200 210 220 230 ff0935 GTLICSILSRSRFHVGDWMGTIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|114 GTLICSILSRSRFHVGDWMGTIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRH 780 790 800 810 820 830 240 250 260 270 280 290 ff0935 CVMSLCSSSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 CVMSLCSSSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHR 840 850 860 870 880 890 300 310 320 330 340 350 ff0935 GAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVA 900 910 920 930 940 950 360 370 380 390 400 410 ff0935 VARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHE 960 970 980 990 1000 1010 420 430 440 450 460 470 ff0935 LITSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LITSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILT 1020 1030 1040 1050 1060 1070 480 490 500 510 520 530 ff0935 LLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDR 1080 1090 1100 1110 1120 1130 540 550 560 570 580 590 ff0935 ALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGE 1140 1150 1160 1170 1180 1190 600 610 620 630 640 650 ff0935 QASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKV 1200 1210 1220 1230 1240 1250 660 670 680 690 700 710 ff0935 TLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCV 1260 1270 1280 1290 1300 1310 720 730 740 750 760 770 ff0935 QQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALAD 1320 1330 1340 1350 1360 1370 780 790 800 810 820 830 ff0935 ASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKA ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ASLRNMVQAEQEHDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKA 1380 1390 1400 1410 1420 1430 840 850 860 870 880 890 ff0935 LKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEA :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LKQYTTTTSVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEA 1440 1450 1460 1470 1480 1490 900 910 920 930 940 950 ff0935 IIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 IIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL 1500 1510 1520 1530 1540 1550 960 970 980 990 1000 1010 ff0935 RGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD 1560 1570 1580 1590 1600 1610 1020 1030 1040 1050 1060 1070 ff0935 IILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 IILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLW 1620 1630 1640 1650 1660 1670 1080 1090 1100 1110 1120 1130 ff0935 ISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSTSTLEEHSEGKQI :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|114 ISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSNSTLEEHSEGKQI 1680 1690 1700 1710 1720 1730 1140 ff0935 KNLPEETFSRYAFYLSL ::::::::::. . : gi|114 KNLPEETFSRFLLQLVGILLEDIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGMF 1740 1750 1760 1770 1780 1790 >>gi|194209359|ref|XP_001488843.2| PREDICTED: similar to (3100 aa) initn: 7081 init1: 7019 opt: 7019 Z-score: 8090.9 bits: 1510.4 E(): 0 Smith-Waterman score: 7019; 95.200% identity (98.756% similar) in 1125 aa overlap (21-1145:583-1707) 10 20 30 40 50 ff0935 MYNCILSGNLSLNLDFSVFKALQQAHLLKNMSHCRQPSDSSVDKFVLRDE ::::::::. ..: :::::::.:::: ::: gi|194 MQIGQPRDEGEEAAGLLPDEDVDAFTDSAVALQQAHLLERLGHSRQPSDSSIDKFVSRDE 560 570 580 590 600 610 60 70 80 90 100 110 ff0935 ATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVK :::::::::::::::::::.:.:::::::.:::::::::::::: ::.:::::::::::: gi|194 ATEPGDQENKPCRIKGDIGRSADDDSAPLIHCVRLLSASFLLTGEKNALVPDRDVRVSVK 620 630 640 650 660 670 120 130 140 150 160 170 ff0935 ALALSCVGAAVALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILC :::::::::::::::::::::::::::.::::::::::::.::::::::::::::::::: gi|194 ALALSCVGAAVALHPESFFSKLYKVPLETTEYPEEQYVSDVLNYIDHGDPQVRGATAILC 680 690 700 710 720 730 180 190 200 210 220 230 ff0935 GTLICSILSRSRFHVGDWMGTIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRN :::. :::::::::::::..:.::::::::::.::::::.:::::::::::::::::::. gi|194 GTLVYSILSRSRFHVGDWVATVRTLTGNTFSLVDCIPLLQKTLKDESSVTCKLACTAVRH 740 750 760 770 780 790 240 250 260 270 280 290 ff0935 CVMSLCSSSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHR ::::::::::::.::::: ::::::::::::::::::::::::::::::::::::::.:: gi|194 CVMSLCSSSYSEFGLQLITDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENIHR 800 810 820 830 840 850 300 310 320 330 340 350 ff0935 GAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVA ::::::: :::::::::::::.:::::::::::::::::.:::::::::::::::::::: gi|194 GAHHYTGRLKLQERVLNNVVIYLLGDEDPRVRHVAAASLMRLVPKLFYKCDQGQADPVVA 860 870 880 890 900 910 360 370 380 390 400 410 ff0935 VARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 VARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHE 920 930 940 950 960 970 420 430 440 450 460 470 ff0935 LITSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILT :::::::::::::::::::::::::::.:::::::::::::::::.:::::::::::::: gi|194 LITSTTRALTFGCCEALCLLSTAFPVCVWSLGWHCGVPPLSASDEARKSCTVGMATMILT 980 990 1000 1010 1020 1030 480 490 500 510 520 530 ff0935 LLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDR :::::::::::::::::::::::::::::::::::::.::::::::::::::.::::::: gi|194 LLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWTSEEEANPAATKQEEIWPALGDR 1040 1050 1060 1070 1080 1090 540 550 560 570 580 590 ff0935 ALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGE .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 TLVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGE 1100 1110 1120 1130 1140 1150 600 610 620 630 640 650 ff0935 QASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKV :::::::::::.::: ::::::::::: ..:::::::::::::::::::::::::::::: gi|194 QASVPLSPKKGNEASPASRQSDTSGPVPANKSSSLGSFYHLPSYLKLHDVLKATHANYKV 1160 1170 1180 1190 1200 1210 660 670 680 690 700 710 ff0935 TLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 TLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCV 1220 1230 1240 1250 1260 1270 720 730 740 750 760 770 ff0935 QQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 QQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALAD 1280 1290 1300 1310 1320 1330 780 790 800 810 820 830 ff0935 ASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKA :::::::::::..::::::::::::::::::::::::::::::::::::::::::::::: gi|194 ASLRNMVQAEQDHDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKA 1340 1350 1360 1370 1380 1390 840 850 860 870 880 890 ff0935 LKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEA :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 LKQYTTTTSVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEA 1400 1410 1420 1430 1440 1450 900 910 920 930 940 950 ff0935 IIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 IIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL 1460 1470 1480 1490 1500 1510 960 970 980 990 1000 1010 ff0935 RGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 RGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD 1520 1530 1540 1550 1560 1570 1020 1030 1040 1050 1060 1070 ff0935 IILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLW ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|194 IILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPDTMASVSTVQLW 1580 1590 1600 1610 1620 1630 1080 1090 1100 1110 1120 1130 ff0935 ISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSTSTLEEHSEGKQI :::::::::::::::::::::::::::::::::::: .:::::::::.:: ::..::.:. gi|194 ISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCPIINRLRDGDSNSTPEEQGEGRQV 1640 1650 1660 1670 1680 1690 1140 ff0935 KNLPEETFSRYAFYLSL ::::::::::. . : gi|194 KNLPEETFSRFLLQLVGILLEDIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGMF 1700 1710 1720 1730 1740 1750 >>gi|108994114|ref|XP_001086119.1| PREDICTED: huntingtin (3133 aa) initn: 7014 init1: 6551 opt: 7007 Z-score: 8076.9 bits: 1507.9 E(): 0 Smith-Waterman score: 7007; 96.270% identity (98.046% similar) in 1126 aa overlap (21-1145:612-1737) 10 20 30 40 50 ff0935 MYNCILSGNLSLNLDFSVFKALQQAHLLKNMSHCRQPSDSSVDKFVLRDE ::::::::::::: :::::::::::::::: gi|108 LQIGQPQDEDEEATGVLPDKASEAFRNSSMALQQAHLLKNMSHSRQPSDSSVDKFVLRDE 590 600 610 620 630 640 60 70 80 90 100 110 ff0935 ATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 ATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVK 650 660 670 680 690 700 120 130 140 150 160 170 ff0935 ALALSCVGAAVALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 ALALSCVGAAVALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILC 710 720 730 740 750 760 180 190 200 210 220 230 ff0935 GTLICSILSRSRFHVGDWMGTIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRN ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::. gi|108 GTLICSILSRSRFHVGDWMGAIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRH 770 780 790 800 810 820 240 250 260 270 280 290 ff0935 CVMSLCSSSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 CVMSLCSSSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHR 830 840 850 860 870 880 300 310 320 330 340 350 ff0935 GAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 GAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVA 890 900 910 920 930 940 360 370 380 390 400 410 ff0935 VARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 VARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHE 950 960 970 980 990 1000 420 430 440 450 460 470 ff0935 LITSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 LITSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILT 1010 1020 1030 1040 1050 1060 480 490 500 510 520 530 ff0935 LLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 LLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDR 1070 1080 1090 1100 1110 1120 540 550 560 570 580 590 ff0935 ALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 ALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGE 1130 1140 1150 1160 1170 1180 600 610 620 630 640 650 ff0935 QASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 QASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKV 1190 1200 1210 1220 1230 1240 660 670 680 690 700 710 ff0935 TLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 TLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCV 1250 1260 1270 1280 1290 1300 720 730 740 750 760 770 ff0935 QQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 QQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALAD 1310 1320 1330 1340 1350 1360 780 790 800 810 820 830 ff0935 ASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKA ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|108 ASLRNMVQAEQEHDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKA 1370 1380 1390 1400 1410 1420 840 850 860 870 880 890 ff0935 LKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEA :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 LKQYTTTTSVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEA 1430 1440 1450 1460 1470 1480 900 910 920 930 940 950 ff0935 IIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 IIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL 1490 1500 1510 1520 1530 1540 960 970 980 990 1000 1010 ff0935 RGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|108 RGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD 1550 1560 1570 1580 1590 1600 1020 1030 1040 1050 1060 ff0935 IILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNT-MASVSTVQL ::::::::::.:. : :.:..::. : :...::. ::. . . :::::::: gi|108 IILPMLAKQQQHLYLTEKNGALEALFHYLLPGGVRPAWRSLRGXXXXXXXPKASVSTVQL 1610 1620 1630 1640 1650 1660 1070 1080 1090 1100 1110 1120 ff0935 WISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSTSTLEEHSEGKQ ::::::::::::::::::::::::::::::::::::: ::::::::::.:.::::::::: gi|108 WISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCPVINRLRDGDSNSALEEHSEGKQ 1670 1680 1690 1700 1710 1720 1130 1140 ff0935 IKNLPEETFSRYAFYLSL :::::::::::. . : gi|108 IKNLPEETFSRFLLQLVGILLEDIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGM 1730 1740 1750 1760 1770 1780 >>gi|73951765|ref|XP_536221.2| PREDICTED: similar to Hun (3130 aa) initn: 7007 init1: 6918 opt: 6918 Z-score: 7974.2 bits: 1488.8 E(): 0 Smith-Waterman score: 6918; 93.867% identity (98.222% similar) in 1125 aa overlap (21-1145:613-1737) 10 20 30 40 50 ff0935 MYNCILSGNLSLNLDFSVFKALQQAHLLKNMSHCRQPSDSSVDKFVLRDE :::::::::.:.: :::::::.:::: ::: gi|739 MQIGQPQDEDEETAGILPDEDADAFRTSSVALQQAHLLKSMGHSRQPSDSSIDKFVSRDE 590 600 610 620 630 640 60 70 80 90 100 110 ff0935 ATEPGDQENKPCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVK ::: ::::::::::::::::::::::.::::::::: ::::::: ::::::::::::::: gi|739 ATETGDQENKPCRIKGDIGQSTDDDSVPLVHCVRLLCASFLLTGEKNVLVPDRDVRVSVK 650 660 670 680 690 700 120 130 140 150 160 170 ff0935 ALALSCVGAAVALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILC ::::::::::::::::::::::::::::: :::::::::::::::::::::::::::.:: gi|739 ALALSCVGAAVALHPESFFSKLYKVPLDTMEYPEEQYVSDILNYIDHGDPQVRGATAVLC 710 720 730 740 750 760 180 190 200 210 220 230 ff0935 GTLICSILSRSRFHVGDWMGTIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRN :::: ::::::::.:::::::.:::::.:::::::.:::.:::::::::::::::::::. gi|739 GTLISSILSRSRFQVGDWMGTVRTLTGSTFSLADCVPLLQKTLKDESSVTCKLACTAVRH 770 780 790 800 810 820 240 250 260 270 280 290 ff0935 CVMSLCSSSYSELGLQLIIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHR :::::::::::::::::: .::::..::::::::::::::::::::::::::.::::::: gi|739 CVMSLCSSSYSELGLQLITNVLTLKDSSYWLVRTELLETLAEIDFRLVSFLETKAENLHR 830 840 850 860 870 880 300 310 320 330 340 350 ff0935 GAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVA :.::::::::::::::..:::.:::::::::::::::.:.:::::::::::::::::::: gi|739 GTHHYTGLLKLQERVLHDVVIYLLGDEDPRVRHVAAAALMRLVPKLFYKCDQGQADPVVA 890 900 910 920 930 940 360 370 380 390 400 410 ff0935 VARDQSSVYLKLLMHETQPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHE ::::::::::::::::.:::::::::::::::::::::::.::::.::::::::::::.: gi|739 VARDQSSVYLKLLMHEAQPPSHFSVSTITRIYRGYNLLPSMTDVTVENNLSRVIAAVSRE 950 960 970 980 990 1000 420 430 440 450 460 470 ff0935 LITSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILT :.:::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: gi|739 LVTSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCGVPPLSTSDESRKSCTVGMATMILT 1010 1020 1030 1040 1050 1060 480 490 500 510 520 530 ff0935 LLSSAWFPLDLSAHQDALILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDR ::::::::::::::::::.::::::::::::::::::.::::::::..:::::::::::: gi|739 LLSSAWFPLDLSAHQDALVLAGNLLAASAPKSLRSSWTSEEEANPATSKQEEVWPALGDR 1070 1080 1090 1100 1110 1120 540 550 560 570 580 590 ff0935 ALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGE .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 TLVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGE 1130 1140 1150 1160 1170 1180 600 610 620 630 640 650 ff0935 QASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKV :::::::::::::: ::::::. ::::..:::::::: ::::::::::::::::::::: gi|739 PASVPLSPKKGSEASPASRQSDAPGPVTANKSSSLGSFCHLPSYLKLHDVLKATHANYKV 1190 1200 1210 1220 1230 1240 660 670 680 690 700 710 ff0935 TLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCV :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|739 TLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPVMATVCV 1250 1260 1270 1280 1290 1300 720 730 740 750 760 770 ff0935 QQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 QQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALAD 1310 1320 1330 1340 1350 1360 780 790 800 810 820 830 ff0935 ASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKA ::::.:::.::.. :::::::::::::::::::::.:::::::::::::::::::::::: gi|739 ASLRTMVQTEQDHGTSGWFDVLQKVSTQLKTNLTSATKNRADKNAIHNHIRLFEPLVIKA 1370 1380 1390 1400 1410 1420 840 850 860 870 880 890 ff0935 LKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEA :::::::: ::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|739 LKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEA 1430 1440 1450 1460 1470 1480 900 910 920 930 940 950 ff0935 IIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 IIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVL 1490 1500 1510 1520 1530 1540 960 970 980 990 1000 1010 ff0935 RGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 RGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIAD 1550 1560 1570 1580 1590 1600 1020 1030 1040 1050 1060 1070 ff0935 IILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLW .:::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|739 VILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPDTMASVSTVQLW 1610 1620 1630 1640 1650 1660 1080 1090 1100 1110 1120 1130 ff0935 ISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSTSTLEEHSEGKQI :::::::::::::::::::::::::::::::::::: .::::::::::: ::: ::::. gi|739 ISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCPIINRLRDGDSTSIPEEHHEGKQM 1670 1680 1690 1700 1710 1720 1140 ff0935 KNLPEETFSRYAFYLSL :.::::::::. . : gi|739 KTLPEETFSRFLLQLVGILLEDIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGMF 1730 1740 1750 1760 1770 1780 1147 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sat Aug 9 04:35:03 2008 done: Sat Aug 9 04:37:19 2008 Total Scan time: 1148.780 Total Display time: 1.150 Function used was FASTA [version 34.26.5 April 26, 2007]