hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-04433025/chunk_1/iprscan-20080809-04433025.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff11079 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00621.11.fs RhoGEF domain 78.8 4.6e-23 1 PF00621.11.ls RhoGEF domain 80.5 4.7e-21 1 PF00169.19.fs PH domain 39.1 1.9e-11 1 PF00169.19.ls PH domain 41.1 3.5e-09 1 PF07653.7.fs Variant SH3 domain 34.1 3.7e-09 1 PF00018.18.fs SH3 domain 36.3 3.9e-09 1 PF07653.7.ls Variant SH3 domain 33.8 5.7e-07 1 PF00018.18.ls SH3 domain 32.1 1.9e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00621.11.ls 1/1 448 627 .. 1 207 [] 80.5 4.7e-21 PF00621.11.fs 1/1 448 627 .. 1 207 [] 78.8 4.6e-23 PF00169.19.fs 1/1 661 787 .. 1 92 [] 39.1 1.9e-11 PF00169.19.ls 1/1 661 787 .. 1 92 [] 41.1 3.5e-09 PF07653.7.ls 1/1 798 853 .. 1 69 [] 33.8 5.7e-07 PF00018.18.ls 1/1 800 853 .. 1 59 [] 32.1 1.9e-06 PF07653.7.fs 1/1 802 853 .. 5 69 .] 34.1 3.7e-09 PF00018.18.fs 1/1 805 846 .. 9 52 .. 36.3 3.9e-09 Alignments of top-scoring domains: PF00621.11.ls: domain 1 of 1, from 448 to 627: score 80.5, E = 4.7e-21 *->vlkElleTEkkYvrdLeildnvy..mkpLreaaisskplLtpddiet +++E++ +E Y+ +Leil++ +++ k+L + t+ + ++ ff11079 448 AIFEVISSEHSYLLSLEILIRMFknSKELSD-------TMTKTERHH 487 iFsNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFle +FsNi d e + F++ +Lear + + d++++ ff11079 488 LFSNITDVCEASKKFFI-ELEARHQNN-----------IFIDDISDIVEK 525 lkaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgA + a+ +++Y +Yc+n y q +l kl+ a+np+F+e+l+++e ++++ ff11079 526 HTASTFDPYVKYCTNEVYQQRTLQKLL--ATNPSFKEVLSRIESHEDCR- 572 kddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkal +l s+L+ P+qR++r pLL + + +tp ds+ +e k al ff11079 573 -----NLPMISFLILPMQRVTRLPLLMDTICQKTPK--DSPKYEVCKRAL 615 dalqdlaksiNe<-* + + l + Ne ff11079 616 KEVSKLVRLCNE 627 PF00621.11.fs: domain 1 of 1, from 448 to 627: score 78.8, E = 4.6e-23 *->vlkElleTEkkYvrdLeildnvy..mkpLreaaisskplLtpddiet +++E++ +E Y+ +Leil++ +++ k+L + t+ + ++ ff11079 448 AIFEVISSEHSYLLSLEILIRMFknSKELSD-------TMTKTERHH 487 iFsNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFle +FsNi d e + F++ +Lear + + d++++ ff11079 488 LFSNITDVCEASKKFFI-ELEARHQNN-----------IFIDDISDIVEK 525 lkaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgA + a+ +++Y +Yc+n y q +l kl+ a+np+F+e+l+++e ++++ ff11079 526 HTASTFDPYVKYCTNEVYQQRTLQKLL--ATNPSFKEVLSRIESHEDCR- 572 kddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkal +l s+L+ P+qR++r pLL + + +tp ds+ +e k al ff11079 573 -----NLPMISFLILPMQRVTRLPLLMDTICQKTPK--DSPKYEVCKRAL 615 dalqdlaksiNe<-* + + l + Ne ff11079 616 KEVSKLVRLCNE 627 PF00169.19.fs: domain 1 of 1, from 661 to 787: score 39.1, E = 1.9e-11 *->vikeGwLlkkg.......gkkswkkRyfvLfddvLlyykdkk..... ++k+G+L+ +++++ +++ s +++yf+Lf+dvL++ k+k++++ + ff11079 661 LVKRGELTAYVedtvlfsRRTSKQQVYFFLFNDVLIITKKKSeesyn 707 ...kkpkgsipLsgiqvtkvpdn..............krkncFeirt.dr ++++++ + ++++ +++ +++++++++ ++++ + F ++ ++ ff11079 708 vndYSLRDQLLVESCDNEELNSSpgknsstmlysrqsSASHLFTLTVlSN 757 .....etlllqaeseeerkeWvkaiqsair<-* + +++ + ll ae++ er +W++a+ ++ ff11079 758 hanekVEMLLGAETQSERARWITALGHSSG 787 PF00169.19.ls: domain 1 of 1, from 661 to 787: score 41.1, E = 3.5e-09 *->vikeGwLlkkg.......gkkswkkRyfvLfddvLlyykdkk..... ++k+G+L+ +++++ +++ s +++yf+Lf+dvL++ k+k++++ + ff11079 661 LVKRGELTAYVedtvlfsRRTSKQQVYFFLFNDVLIITKKKSeesyn 707 ...kkpkgsipLsgiqvtkvpdn..............krkncFeirt.dr ++++++ + ++++ +++ +++++++++ ++++ + F ++ ++ ff11079 708 vndYSLRDQLLVESCDNEELNSSpgknsstmlysrqsSASHLFTLTVlSN 757 .....etlllqaeseeerkeWvkaiqsair<-* + +++ + ll ae++ er +W++a+ ++ ff11079 758 hanekVEMLLGAETQSERARWITALGHSSG 787 PF07653.7.ls: domain 1 of 1, from 798 to 853: score 33.8, E = 5.7e-07 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe + +++++a ++e Lsl++ dvv ++ + +dgw+e ff11079 798 QVEIVRSFTA-KQPDE------LSLQVADVVLIY----QRVSDGWYE 833 geslggGrrrRGlvPssaveel<-* ge+l +G+r G++P+++ +e+ ff11079 834 GERLRDGER--GWFPMECAKEI 853 PF00018.18.ls: domain 1 of 1, from 800 to 853: score 32.1, E = 1.9e-06 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk ++v+ ++a ++dELs++ Dv+ + +++ d gW++g+++++g + ff11079 800 EIVR---SFTAKQPDELSLQVADVVLIYQRVSD-GWYEGERLRDG-E 841 eGliPsNYVepv<-* +G++P + ++ ff11079 842 RGWFPMECAKEI 853 PF07653.7.fs: domain 1 of 1, from 802 to 853: score 34.1, E = 3.7e-09 *->iedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwegesl +++++a ++e Lsl++ dvv ++ + +dgw+ege+l ff11079 802 VRSFTA-KQPDE------LSLQVADVVLIY----QRVSDGWYEGERL 837 ggGrrrRGlvPssaveel<-* +G+r G++P+++ +e+ ff11079 838 RDGER--GWFPMECAKEI 853 PF00018.18.fs: domain 1 of 1, from 805 to 846: score 36.3, E = 3.9e-09 *->YearesdELsFkkGDvitvleksddpgWWkgrlkgtgGkeGliP<-* ++a ++dELs++ Dv+ + +++ d gW++g+++++g ++G++P ff11079 805 FTAKQPDELSLQVADVVLIYQRVSD-GWYEGERLRDG-ERGWFP 846 //