hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-04433025/chunk_1/iprscan-20080809-04433025.nocrc
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Query sequence: ff11079
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00325                                                 171.0    1.1e-46   1
SM00326                                                  58.4    9.4e-13   1
SM00233                                                  48.0    1.3e-09   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00325     1/1     448   627 ..     1   211 []   171.0  1.1e-46
SM00233     1/1     661   789 ..     1    82 []    48.0  1.3e-09
SM00326     1/1     797   854 ..     1    58 []    58.4  9.4e-13

Alignments of top-scoring domains:
SM00325: domain 1 of 1, from 448 to 627: score 171.0, E = 1.1e-46
                   *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl
                      +++E + +E +Y+ +L+il++ f    + ++       ++  e ++l
     ff11079   448    AIFEVISSEHSYLLSLEILIRMFKNSKELSD------TMTKTERHHL 488  

                   FgpNieeiyefHrrFLdeLeerveewllskdlKsernsviedsgerigdv
                   F+ Ni +++e +++F++eLe+r ++                   ++i+d+
     ff11079   489 FS-NITDVCEASKKFFIELEARHQNN---------------IFIDDISDI 522  

                   FlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeiesk
                    +k+   ++ f++Y +Yc n  +++++l+kL+  ++np F+++l +ies+
     ff11079   523 VEKH--TASTFDPYVKYCTNEVYQQRTLQKLL--ATNPSFKEVLSRIESH 568  

                   pncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLkk
                   + cr     +l++ s+Li+P+QR+t+ pLL+  ++++tp+d++ +e +k+
     ff11079   569 EDCR-----NLPMISFLILPMQRVTRLPLLMDTICQKTPKDSPKYEVCKR 613  

                   AleaikelasqvNe<-*
                   Al+ + +l + +Ne   
     ff11079   614 ALKEVSKLVRLCNE    627  

SM00233: domain 1 of 1, from 661 to 789: score 48.0, E = 1.3e-09
                   *->vikeGwLlkks........k.swkkryfvLfngvLlyyksk......
                      ++k+G L+ +  ++   ++++s +++yf+Lfn+vL+++k+k++++ +
     ff11079   661    LVKRGELTAYVedtvlfsrRtSKQQVYFFLFNDVLIITKKKseesyn 707  

                   ....kpkgsipLsgcsvre.p....................cFeivt.dr
                    ++ +++  + +++c  +e  ++++++++    ++ ++ ++ F+++  ++
     ff11079   708 vndySLRDQLLVESCDNEElNsspgknsstmlysrqssashLFTLTVlSN 757  

                   ......tlllqAeseeereeWvealqsaiaka<-*
                   + +++ ++ll Ae+++er +W++al   + k    
     ff11079   758 hanekvEMLLGAETQSERARWITALGHSSGKP    789  

SM00326: domain 1 of 1, from 797 to 854: score 58.4, E = 9.4e-13
                   *->eyvvAlYDyeaqnedELsFkkGDiitvleksddgWweGelnrtGkeG
                       +v  + +++a ++dELs++  D++++ ++++dgW+eGe+ r+G++G
     ff11079   797    TQVEIVRSFTAKQPDELSLQVADVVLIYQRVSDGWYEGERLRDGERG 843  

                   lfPsnYVeeie<-*
                   +fP  + +ei+   
     ff11079   844 WFPMECAKEIT    854  

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