hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-04555183/chunk_1/iprscan-20080809-04555183.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff11569 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 347.7 1.8e-101 12 PF00096.16.fs Zinc finger, C2H2 type 324.1 2.3e-94 12 PF01352.17.fs KRAB box 98.6 2e-27 1 PF01352.17.ls KRAB box 100.6 4.2e-27 1 PF01096.9.fs Transcription factor S-II (TFIIS) 35.0 4e-10 10 PF01286.9.fs XPA protein N-terminal 32.9 1.3e-08 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.ls 1/1 5 45 .. 1 41 [] 100.6 4.2e-27 PF01352.17.fs 1/1 5 45 .. 1 41 [] 98.6 2e-27 PF00096.16.fs 1/12 210 232 .. 1 24 [] 31.8 1.1e-06 PF00096.16.ls 1/12 210 232 .. 1 24 [] 33.8 5.7e-07 PF00096.16.ls 2/12 238 260 .. 1 24 [] 34.1 4.5e-07 PF00096.16.fs 2/12 238 260 .. 1 24 [] 32.1 9.3e-07 PF00096.16.ls 3/12 266 288 .. 1 24 [] 24.5 0.00034 PF00096.16.fs 3/12 266 288 .. 1 24 [] 22.6 0.00022 PF00096.16.ls 4/12 294 316 .. 1 24 [] 22.7 0.0012 PF00096.16.ls 5/12 322 344 .. 1 24 [] 33.8 5.6e-07 PF00096.16.fs 5/12 322 344 .. 1 24 [] 31.8 1.1e-06 PF00096.16.ls 6/12 350 372 .. 1 24 [] 24.0 0.00051 PF00096.16.ls 7/12 378 400 .. 1 24 [] 32.9 1e-06 PF00096.16.fs 7/12 378 400 .. 1 24 [] 30.9 1.9e-06 PF00096.16.ls 8/12 406 428 .. 1 24 [] 22.6 0.0013 PF00096.16.ls 9/12 434 456 .. 1 24 [] 33.3 7.9e-07 PF00096.16.fs 9/12 434 456 .. 1 24 [] 31.3 1.5e-06 PF00096.16.ls 10/12 462 484 .. 1 24 [] 21.7 0.0024 PF00096.16.fs 11/12 490 512 .. 1 24 [] 29.2 5e-06 PF00096.16.ls 11/12 490 512 .. 1 24 [] 31.2 3.5e-06 PF00096.16.fs 12/12 518 540 .. 1 24 [] 31.2 1.6e-06 PF00096.16.ls 12/12 518 540 .. 1 24 [] 33.2 8.6e-07 Alignments of top-scoring domains: PF01352.17.ls: domain 1 of 1, from 5 to 45: score 100.6, E = 4.2e-27 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V+F+DVaVdFtqEEW++Ld+ Qr+LYrdVMlENy+nL+ lg ff11569 5 VSFKDVAVDFTQEEWGQLDSPQRALYRDVMLENYQNLLALG 45 PF01352.17.fs: domain 1 of 1, from 5 to 45: score 98.6, E = 2e-27 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V+F+DVaVdFtqEEW++Ld+ Qr+LYrdVMlENy+nL+ lg ff11569 5 VSFKDVAVDFTQEEWGQLDSPQRALYRDVMLENYQNLLALG 45 PF00096.16.fs: domain 1 of 12, from 210 to 232: score 31.8, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cgk+F+++s+L+ H+r H ff11569 210 FVCG-ECGKAFRQSSSLTLHRRWH 232 PF00096.16.ls: domain 1 of 12, from 210 to 232: score 33.8, E = 5.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cgk+F+++s+L+ H+r H ff11569 210 FVCG-ECGKAFRQSSSLTLHRRWH 232 PF00096.16.ls: domain 2 of 12, from 238 to 260: score 34.1, E = 4.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ + nL H+r+H ff11569 238 YKCD-ECGKAFTWSTNLLEHRRIH 260 PF00096.16.fs: domain 2 of 12, from 238 to 260: score 32.1, E = 9.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ + nL H+r+H ff11569 238 YKCD-ECGKAFTWSTNLLEHRRIH 260 PF00096.16.ls: domain 3 of 12, from 266 to 288: score 24.5, E = 0.00034 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C +Cgk+Fs +s+L+ H+r+H ff11569 266 FFCG-ECGKAFSCHSSLNVHQRIH 288 PF00096.16.fs: domain 3 of 12, from 266 to 288: score 22.6, E = 0.00022 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C +Cgk+Fs +s+L+ H+r+H ff11569 266 FFCG-ECGKAFSCHSSLNVHQRIH 288 PF00096.16.ls: domain 4 of 12, from 294 to 316: score 22.7, E = 0.0012 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ C k+Fs +s L +Hlr+H ff11569 294 YKCS-ACEKAFSCSSLLSMHLRVH 316 PF00096.16.ls: domain 5 of 12, from 322 to 344: score 33.8, E = 5.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+++ +L+rH r+H ff11569 322 YRCG-ECGKAFNQRTHLTRHHRIH 344 PF00096.16.fs: domain 5 of 12, from 322 to 344: score 31.8, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk+F+++ +L+rH r+H ff11569 322 YRCG-ECGKAFNQRTHLTRHHRIH 344 PF00096.16.ls: domain 6 of 12, from 350 to 372: score 24.0, E = 0.00051 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C Cgk+F+ +s+L+ H ++H ff11569 350 YQCG-SCGKAFTCHSSLTVHEKIH 372 PF00096.16.ls: domain 7 of 12, from 378 to 400: score 32.9, E = 1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ dC k+F+++s L+ H+rtH ff11569 378 FKCS-DCEKAFNSRSRLTLHQRTH 400 PF00096.16.fs: domain 7 of 12, from 378 to 400: score 30.9, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ dC k+F+++s L+ H+rtH ff11569 378 FKCS-DCEKAFNSRSRLTLHQRTH 400 PF00096.16.ls: domain 8 of 12, from 406 to 428: score 22.6, E = 0.0013 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC dCgk Fs ++ L H+r+H ff11569 406 FKCA-DCGKGFSCHAYLLVHRRIH 428 PF00096.16.ls: domain 9 of 12, from 434 to 456: score 33.3, E = 7.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+Fs+++ L H+r+H ff11569 434 FKCN-ECGKAFSSHAYLIVHRRIH 456 PF00096.16.fs: domain 9 of 12, from 434 to 456: score 31.3, E = 1.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+Fs+++ L H+r+H ff11569 434 FKCN-ECGKAFSSHAYLIVHRRIH 456 PF00096.16.ls: domain 10 of 12, from 462 to 484: score 21.7, E = 0.0024 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +C k+Fs +s+L H+r+H ff11569 462 FDCS-QCWKAFSCHSSLIVHQRIH 484 PF00096.16.fs: domain 11 of 12, from 490 to 512: score 29.2, E = 5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg++Fs+++ L +H+++H ff11569 490 YKCS-ECGRAFSQNHCLIKHQKIH 512 PF00096.16.ls: domain 11 of 12, from 490 to 512: score 31.2, E = 3.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg++Fs+++ L +H+++H ff11569 490 YKCS-ECGRAFSQNHCLIKHQKIH 512 PF00096.16.fs: domain 12 of 12, from 518 to 540: score 31.2, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cg++F+ +s+L+ H+r H ff11569 518 FKCE-KCGEMFNWSSHLTEHQRLH 540 PF00096.16.ls: domain 12 of 12, from 518 to 540: score 33.2, E = 8.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cg++F+ +s+L+ H+r H ff11569 518 FKCE-KCGEMFNWSSHLTEHQRLH 540 //