hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-04555183/chunk_1/iprscan-20080809-04555183.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff11569 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 301.1 7.9e-86 12 SM00349 142.1 5.7e-38 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 5 65 .. 1 62 [] 142.1 5.7e-38 SM00355 1/12 210 232 .. 1 23 [] 18.9 0.72 SM00355 2/12 238 260 .. 1 23 [] 30.9 0.00018 SM00355 3/12 266 288 .. 1 23 [] 23.6 0.028 SM00355 4/12 294 316 .. 1 23 [] 22.3 0.066 SM00355 5/12 322 344 .. 1 23 [] 28.7 0.00081 SM00355 6/12 350 372 .. 1 23 [] 21.8 0.094 SM00355 7/12 378 400 .. 1 23 [] 29.3 0.00052 SM00355 8/12 406 428 .. 1 23 [] 21.4 0.12 SM00355 9/12 434 456 .. 1 23 [] 29.7 0.0004 SM00355 10/12 462 484 .. 1 23 [] 20.9 0.17 SM00355 11/12 490 512 .. 1 23 [] 25.9 0.0056 SM00355 12/12 518 540 .. 1 23 [] 27.6 0.0017 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 5 to 65: score 142.1, E = 5.7e-38 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk V+F+DVAVdF+qEEW+qLD+ Qr+LYRdVMlENY nL LG ++++k ff11569 5 VSFKDVAVDFTQEEWGQLDSPQRALYRDVMLENYQNLLALG-PPLHK 50 pdliskLEqgeEpwi<-* pd+is LE+geEpw+ ff11569 51 PDVISHLERGEEPWS 65 SM00355: domain 1 of 12, from 210 to 232: score 18.9, E = 0.72 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C + Cgk f++ ++L+ H r H ff11569 210 FVCGE-CGKAFRQSsSLTLHRRWH 232 SM00355: domain 2 of 12, from 238 to 260: score 30.9, E = 0.00018 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++ ++L +H r+H ff11569 238 YKCDE-CGKAFTWStNLLEHRRIH 260 SM00355: domain 3 of 12, from 266 to 288: score 23.6, E = 0.028 *->ykCpigCgksfssk.aLkrHmrvH<-* + C + Cgk fs +++L+ H+r+H ff11569 266 FFCGE-CGKAFSCHsSLNVHQRIH 288 SM00355: domain 4 of 12, from 294 to 316: score 22.3, E = 0.066 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC+ C k fs + L H+rvH ff11569 294 YKCSA-CEKAFSCSsLLSMHLRVH 316 SM00355: domain 5 of 12, from 322 to 344: score 28.7, E = 0.00081 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C + Cgk f+++++L+rH r+H ff11569 322 YRCGE-CGKAFNQRtHLTRHHRIH 344 SM00355: domain 6 of 12, from 350 to 372: score 21.8, E = 0.094 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C Cgk f+ +++L+ H ++H ff11569 350 YQCGS-CGKAFTCHsSLTVHEKIH 372 SM00355: domain 7 of 12, from 378 to 400: score 29.3, E = 0.00052 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC+ C k f+s++ L+ H+r+H ff11569 378 FKCSD-CEKAFNSRsRLTLHQRTH 400 SM00355: domain 8 of 12, from 406 to 428: score 21.4, E = 0.12 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC Cgk fs + L H r+H ff11569 406 FKCAD-CGKGFSCHaYLLVHRRIH 428 SM00355: domain 9 of 12, from 434 to 456: score 29.7, E = 0.0004 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk fss+ L+ H r+H ff11569 434 FKCNE-CGKAFSSHaYLIVHRRIH 456 SM00355: domain 10 of 12, from 462 to 484: score 20.9, E = 0.17 *->ykCpigCgksfssk.aLkrHmrvH<-* + C++ C k fs +++L+ H+r+H ff11569 462 FDCSQ-CWKAFSCHsSLIVHQRIH 484 SM00355: domain 11 of 12, from 490 to 512: score 25.9, E = 0.0056 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cg+ fs+ + L++H+++H ff11569 490 YKCSE-CGRAFSQNhCLIKHQKIH 512 SM00355: domain 12 of 12, from 518 to 540: score 27.6, E = 0.0017 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cg+ f++ ++L++H+r H ff11569 518 FKCEK-CGEMFNWSsHLTEHQRLH 540 //