hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-05060209/chunk_1/iprscan-20080809-05060209.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff11573 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00632.15.ls HECT-domain (ubiquitin-transferase) 375.2 9.6e-110 1 PF00632.15.fs HECT-domain (ubiquitin-transferase) 373.3 3.6e-109 1 PF00415.9.ls Regulator of chromosome condensation (RCC1) 136.0 9.4e-38 6 PF00415.9.fs Regulator of chromosome condensation (RCC1) 127.6 4.2e-36 6 PF00400.22.ls WD domain, G-beta repeat 110.9 3.5e-30 6 PF00622.18.fs SPRY domain 101.3 1.6e-28 1 PF00622.18.ls SPRY domain 103.1 7.4e-28 1 PF00400.22.fs WD domain, G-beta repeat 100.8 2e-27 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00622.18.ls 1/1 1139 1262 .. 1 154 [] 103.1 7.4e-28 PF00622.18.fs 1/1 1139 1262 .. 1 154 [] 101.3 1.6e-28 PF00400.22.ls 1/6 2488 2526 .. 1 38 [] 36.7 7.5e-08 PF00400.22.fs 1/7 2488 2526 .. 1 38 [] 34.7 8.2e-09 PF00400.22.fs 5/7 2686 2724 .. 1 38 [] 18.2 0.00037 PF00400.22.fs 6/7 2730 2774 .. 1 38 [] 15.8 0.0018 PF00400.22.fs 7/7 2807 2845 .. 1 38 [] 29.2 2.9e-07 PF00400.22.ls 6/6 2807 2845 .. 1 38 [] 31.2 3.4e-06 PF00415.9.fs 2/6 3170 3219 .. 1 68 [] 30.4 3.8e-08 PF00415.9.ls 2/6 3170 3219 .. 1 68 [] 32.2 1.7e-06 PF00415.9.fs 3/6 3222 3271 .. 1 68 [] 37.3 4e-10 PF00415.9.ls 3/6 3222 3271 .. 1 68 [] 39.0 1.5e-08 PF00415.9.ls 4/6 3274 3324 .. 1 68 [] 23.8 0.00057 PF00415.9.fs 4/6 3274 3324 .. 1 68 [] 22.1 1e-05 PF00415.9.ls 6/6 3379 3428 .. 1 68 [] 24.2 0.00042 PF00415.9.fs 6/6 3379 3428 .. 1 68 [] 22.5 7.4e-06 PF00632.15.fs 1/1 3603 3915 .. 1 351 [] 373.3 3.6e-109 PF00632.15.ls 1/1 3603 3915 .. 1 351 [] 375.2 9.6e-110 Alignments of top-scoring domains: PF00622.18.ls: domain 1 of 1, from 1139 to 1262: score 103.1, E = 7.4e-28 *->sGkhYfEVevdtgggepthwrvGwatksvhlppgfdlrsskrkgger sG++ + +++ + ++++ + +vG+++++vh ++++r ff11573 1139 SGCYQWKFYIVKENRGNEGTCVGVSRWPVH------------DFNHR 1173 llGddegswgydgsggkkyhagesgepyglpfqekgdviGcflDyeagVt ++ d++ + +y+g+ +yh+ge + ++f++ gd i c lD+ea+ t ff11573 1174 TTSDMWLYRAYSGN---LYHNGEQ-TLTLSSFTQ-GDFITCVLDMEAR-T 1217 isFtkNGkyLgdsEshiyaFrnvtfdkkpggpLyPavslgsadgggeair isF kNG++ + aF++v++ +LyP+v + s++ +ge+++ ff11573 1218 ISFGKNGEE------PKLAFEDVDAA-----ELYPCVMFYSSN-PGEKVK 1255 lnfgqlp<-* ++ q++ ff11573 1256 ICDMQMR 1262 PF00622.18.fs: domain 1 of 1, from 1139 to 1262: score 101.3, E = 1.6e-28 *->sGkhYfEVevdtgggepthwrvGwatksvhlppgfdlrsskrkgger sG++ + +++ + ++++ + +vG+++++vh ++++r ff11573 1139 SGCYQWKFYIVKENRGNEGTCVGVSRWPVH------------DFNHR 1173 llGddegswgydgsggkkyhagesgepyglpfqekgdviGcflDyeagVt ++ d++ + +y+g+ +yh+ge + ++f++ gd i c lD+ea+ t ff11573 1174 TTSDMWLYRAYSGN---LYHNGEQ-TLTLSSFTQ-GDFITCVLDMEAR-T 1217 isFtkNGkyLgdsEshiyaFrnvtfdkkpggpLyPavslgsadgggeair isF kNG++ + aF++v++ +LyP+v + s++ +ge+++ ff11573 1218 ISFGKNGEE------PKLAFEDVDAA-----ELYPCVMFYSSN-PGEKVK 1255 lnfgqlp<-* ++ q++ ff11573 1256 ICDMQMR 1262 PF00400.22.ls: domain 1 of 6, from 2488 to 2526: score 36.7, E = 7.5e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ l++H++ V+ + ++ lla+++ Dgti++W+ ff11573 2488 KCSFiKLeAHQNRVMTCVWCNK-KGLLATSGNDGTIRVWN 2526 PF00400.22.fs: domain 1 of 7, from 2488 to 2526: score 34.7, E = 8.2e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ l++H++ V+ + ++ lla+++ Dgti++W+ ff11573 2488 KCSFiKLeAHQNRVMTCVWCNK-KGLLATSGNDGTIRVWN 2526 PF00400.22.fs: domain 5 of 7, from 2686 to 2724: score 18.2, E = 0.00037 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + + +++H++t +++++p g++l ++ ++k+W ff11573 2686 KGGIvLIdAHKDTLISMKWDPT-GHILMTCAKEDSVKLWG 2724 PF00400.22.fs: domain 6 of 7, from 2730 to 2774: score 15.8, E = 0.0018 *->geck.vl.gHtstVtcvafspd......sgpllasgSrDgtikiWd< ++c+++l + s V+ +a++ ++++++ + l+a+g+ g +++W ff11573 2730 WCCLhSLcHP-SIVNGIAWCRLpgkgskLQLLMATGCQSGLVCVWR 2774 -* ff11573 - - PF00400.22.fs: domain 7 of 7, from 2807 to 2845: score 29.2, E = 2.9e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +c+ l+gH +V+ vafs d g l+sg+ g iW+ ff11573 2807 AKCVyQLrGHITPVRTVAFSSD-GLALVSGGLGGLMNIWS 2845 PF00400.22.ls: domain 6 of 6, from 2807 to 2845: score 31.2, E = 3.4e-06 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +c+ l+gH +V+ vafs d g l+sg+ g iW+ ff11573 2807 AKCVyQLrGHITPVRTVAFSSD-GLALVSGGLGGLMNIWS 2845 PF00415.9.fs: domain 2 of 6, from 3170 to 3219: score 30.4, E = 3.8e-08 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G V+s+G g++G LG g + ++ P ++ ff11573 3170 SGEVFSWGD--GDYGKLGHGNSDRQRR-----------PRQI----- 3198 ssslsekVvsvasGgqHtval<-* e Vv+ ++G H +++ ff11573 3199 EALQGEEVVQMSCGFKHSAVV 3219 PF00415.9.ls: domain 2 of 6, from 3170 to 3219: score 32.2, E = 1.7e-06 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +G V+s+G g++G LG g + ++ P ++ ff11573 3170 SGEVFSWGD--GDYGKLGHGNSDRQRR-----------PRQI----- 3198 ssslsekVvsvasGgqHtval<-* e Vv+ ++G H +++ ff11573 3199 EALQGEEVVQMSCGFKHSAVV 3219 PF00415.9.fs: domain 3 of 6, from 3222 to 3271: score 37.3, E = 4e-10 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr dG+++++G g++G+LGlg + ++ P v ff11573 3222 DGKLFTFGN--GDYGRLGLGNTSNKK-----------LPERV----- 3250 ssslsekVvsvasGgqHtval<-* + +va+G Ht a+ ff11573 3251 TALEGYQIGQVACGLNHTLAV 3271 PF00415.9.ls: domain 3 of 6, from 3222 to 3271: score 39.0, E = 1.5e-08 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr dG+++++G g++G+LGlg + ++ P v ff11573 3222 DGKLFTFGN--GDYGRLGLGNTSNKK-----------LPERV----- 3250 ssslsekVvsvasGgqHtval<-* + +va+G Ht a+ ff11573 3251 TALEGYQIGQVACGLNHTLAV 3271 PF00415.9.ls: domain 4 of 6, from 3274 to 3324: score 23.8, E = 0.00057 *->dG.rVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKs dG+ V ++G g++G LGlg + +s +P+++ ff11573 3274 DGsMVWAFGD--GDYGKLGLGNSTAKS-----------SPQKI---- 3303 rssslsekVvsvasGgqHtval<-* +va+G q+ val ff11573 3304 -DVLCGIGIKKVACGTQFSVAL 3324 PF00415.9.fs: domain 4 of 6, from 3274 to 3324: score 22.1, E = 1e-05 *->dG.rVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKs dG+ V ++G g++G LGlg + +s +P+++ ff11573 3274 DGsMVWAFGD--GDYGKLGLGNSTAKS-----------SPQKI---- 3303 rssslsekVvsvasGgqHtval<-* +va+G q+ val ff11573 3304 -DVLCGIGIKKVACGTQFSVAL 3324 PF00415.9.ls: domain 6 of 6, from 3379 to 3428: score 24.2, E = 0.00042 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr G+VY++G+ + +GqLGlg + ++ P+lv + ff11573 3379 NGDVYAWGS--NSEGQLGLGHTNHVRE-----------PTLV----T 3408 ssslsekVvsvasGgqHtval<-* + ++ V + ++G H +a ff11573 3409 GLQGK-NVRQISAGRCHSAAW 3428 PF00415.9.fs: domain 6 of 6, from 3379 to 3428: score 22.5, E = 7.4e-06 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr G+VY++G+ + +GqLGlg + ++ P+lv + ff11573 3379 NGDVYAWGS--NSEGQLGLGHTNHVRE-----------PTLV----T 3408 ssslsekVvsvasGgqHtval<-* + ++ V + ++G H +a ff11573 3409 GLQGK-NVRQISAGRCHSAAW 3428 PF00632.15.fs: domain 1 of 1, from 3603 to 3915: score 373.3, E = 3.6e-109 *->tLlsrelfnPdygLFeysdd.t.dvnesgyaedsytlqinPlssesn t +++el L ++s++ t +v +++++ +nP+ + ++ ff11573 3603 TEMCQELETGIVDLLIPSPNaTaEV-----GYNRDRFLFNPSACLDE 3644 pehlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDles +++ +FkF+G+++G A++ ++ ld+++++ ++K+L+ ++p+tleDle+ ff11573 3645 HLM--QFKFLGILMGVAIRTKKPLDLHLAPLVWKQLC--CVPLTLEDLEE 3690 vDPelynSLkwllendgdrhILLgsledveedLe..LtFsveeessa.g. vD + ++L+++l+++ + + +ee++++ + ++ sa+g+ ff11573 3691 VDLLYVQTLNSILHIEDS--------GITEESFHemIPLDSFVGQSAdGk 3732 fdpdasdfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQ + v+ +P+G +Ip T +N+keYVe+ +eyrL + + +Q ff11573 3733 M------------VP-IIPGGNSIPLTFSNRKEYVERAIEYRL-HEMDRQ 3768 feAFrkGFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkgg + A+r+G+++++p lLsl++++ Le+++cG+pe i+v+ Lk++++Y+ + ff11573 3769 VAAVREGMSWIVPVPLLSLLTAKQLEQMVCGMPE-ISVEVLKKVVRYR-E 3816 YtedsplktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpG e ++ +qwFW+ +eef++eer+++++Fv G sR+P++ q ff11573 3817 VDEQHQ--LVQWFWHTLEEFSNEERVLFMRFVSGRSRLPANTADISQ--- 3861 snGppkFtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAI +F+I+kv + + d+LPt++TCF++L LPpYsS ++ e+L++AI ff11573 3862 -----RFQIMKV--DRPYDSLPTSQTCFFQLRLPPYSSQLVMAERLRYAI 3904 nee.teGFgle<-* n++++ ++ + ff11573 3905 NNCrSIDMDNY 3915 PF00632.15.ls: domain 1 of 1, from 3603 to 3915: score 375.2, E = 9.6e-110 *->tLlsrelfnPdygLFeysdd.t.dvnesgyaedsytlqinPlssesn t +++el L ++s++ t +v +++++ +nP+ + ++ ff11573 3603 TEMCQELETGIVDLLIPSPNaTaEV-----GYNRDRFLFNPSACLDE 3644 pehlkyFkFiGrilGlAlyngrlldvpFpraFYKkLLmkgkpvtleDles +++ +FkF+G+++G A++ ++ ld+++++ ++K+L+ ++p+tleDle+ ff11573 3645 HLM--QFKFLGILMGVAIRTKKPLDLHLAPLVWKQLC--CVPLTLEDLEE 3690 vDPelynSLkwllendgdrhILLgsledveedLe..LtFsveeessa.g. vD + ++L+++l+++ + + +ee++++ + ++ sa+g+ ff11573 3691 VDLLYVQTLNSILHIEDS--------GITEESFHemIPLDSFVGQSAdGk 3732 fdpdasdfGetktveELkPnGrnIpVTneNkkeYVeLyveyrLnkgiekQ + v+ +P+G +Ip T +N+keYVe+ +eyrL + + +Q ff11573 3733 M------------VP-IIPGGNSIPLTFSNRKEYVERAIEYRL-HEMDRQ 3768 feAFrkGFnevipsrlLslFdpeELelLicGspepiDvddLksnTeYkgg + A+r+G+++++p lLsl++++ Le+++cG+pe i+v+ Lk++++Y+ + ff11573 3769 VAAVREGMSWIVPVPLLSLLTAKQLEQMVCGMPE-ISVEVLKKVVRYR-E 3816 YtedsplktIqwFWevveeftqeerkkLLqFvTGssRvPlgGFkaLqgpG e ++ +qwFW+ +eef++eer+++++Fv G sR+P++ q ff11573 3817 VDEQHQ--LVQWFWHTLEEFSNEERVLFMRFVSGRSRLPANTADISQ--- 3861 snGppkFtIekvgvggdddrLPtAHTCFNrLdLPpYsSkEiLrekLllAI +F+I+kv + + d+LPt++TCF++L LPpYsS ++ e+L++AI ff11573 3862 -----RFQIMKV--DRPYDSLPTSQTCFFQLRLPPYSSQLVMAERLRYAI 3904 nee.teGFgle<-* n++++ ++ + ff11573 3905 NNCrSIDMDNY 3915 //