hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-05060209/chunk_1/iprscan-20080809-05060209.nocrc
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Query sequence: ff11573
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00119                                                 518.5   2.8e-151   1
SM00449                                                 116.5    3.1e-30   1
SM00320                                                 114.8    9.6e-30   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00449    1/1    1139  1260 ..     1   145 []   116.5  3.1e-30
SM00320    1/5    2487  2526 ..     1    46 []    36.8    3e-06
SM00320    2/5    2642  2680 ..     1    46 []     6.7       43
SM00320    3/5    2685  2724 ..     1    46 []    19.7     0.38
SM00320    4/5    2729  2774 ..     1    46 []    17.2     0.92
SM00320    5/5    2806  2845 ..     1    46 []    34.5  1.5e-05
SM00119    1/1    3569  3918 ..     1   407 []   518.5 2.8e-151

Alignments of top-scoring domains:
SM00449: domain 1 of 1, from 1139 to 1260: score 116.5, E = 3.1e-30
                   *->sGkhYfEVevdtggd.kghwrvGvatksvhlypfkvrrkrkggvsll
                      sG++ + +++ +++++++  +vGv++++vh            ++++ 
     ff11573  1139    SGCYQWKFYIVKENRgNEGTCVGVSRWPVH------------DFNHR 1173 

                   GedkgSwgyrgdggkkyhasefgeeyglpfqepgDviGcflDleaggSti
                       + w yr ++g++yh++e+   + ++f++ gD i c lD+ea+  ti
     ff11573  1174 TTS-DMWLYRAYSGNLYHNGEQ-TLTLSSFTQ-GDFITCVLDMEAR--TI 1218 

                   sFykNGkyLgdshilaffdvtfsgpLyPavslgstdgGgesvrlnfGp.p
                   sF kNG++ +    laf+dv +   LyP+v ++s++    + ++ ++  +
     ff11573  1219 SFGKNGEEPK----LAFEDVDAA-ELYPCVMFYSSN---PGEKVKICDmQ 1260 

                   <-*
                      
     ff11573     -     -    

SM00320: domain 1 of 5, from 2487 to 2526: score 36.8, E = 3e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +    +l++H++  +V ++ ++          lla++++Dgtir+W
     ff11573  2487    RkCSFIKLEAHQN--RVMTCVWCNKK------GLLATSGnDGTIRVW 2525 

                   d<-*
                   +   
     ff11573  2526 N    2526 

SM00320: domain 2 of 5, from 2642 to 2680: score 6.7, E = 43
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       ++l + ++  +   +Vt++a+ + +      + +a+g  Dg++ l 
     ff11573  2642    RrELEHCYR-KDV--SVTCIAWFSED------RPFAVGYfDGKLLLG 2679 

                   d<-*
                       
     ff11573  2680 T    2680 

SM00320: domain 3 of 5, from 2685 to 2724: score 19.7, E = 0.38
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++  +  +++H++     s++++p+g      ++l ++ +  +++lW
     ff11573  2685    EkGGIVLIDAHKD--TLISMKWDPTG------HILMTCAkEDSVKLW 2723 

                   d<-*
                       
     ff11573  2724 G    2724 

SM00320: domain 4 of 5, from 2729 to 2774: score 17.2, E = 0.92
                   *->t.kllrtlkgHtgespVtsvafspdggss.dspnllasgs.Dgtirl
                       + +l++l  H +   V+++a++   g++++   l+a+g++ g +++
     ff11573  2729    CwCCLHSLC-HPS--IVNGIAWCRLPGKGsKLQLLMATGCqSGLVCV 2772 

                   Wd<-*
                   W    
     ff11573  2773 WR    2774 

SM00320: domain 5 of 5, from 2806 to 2845: score 34.5, E = 1.5e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        k+++ l+gH    pV++vafs+dg        l+sg+  g   +W
     ff11573  2806    GaKCVYQLRGHIT--PVRTVAFSSDG------LALVSGGlGGLMNIW 2844 

                   d<-*
                   +   
     ff11573  2845 S    2845 

SM00119: domain 1 of 1, from 3569 to 3918: score 518.5, E = 2.8e-151
                   *->nsspddLkkrskeaLeIefvvnehgvgEeglDgGGvtrEFffllske
                      + +++dL+ +s+ a+++++      vgE + D+GGv+++ ++++++e
     ff11573  3569    KLNASDLRLPSR-AWKVKL------VGEGADDAGGVFDDTITEMCQE 3608 

                   lfnptdygLFryspndnaeksktiYigrlrylLfpnPsagfaneehlaav
                   l    +++L+++spn +ae      +g++r+++ +nPsa++  +ehl+  
     ff11573  3609 LETG-IVDLLIPSPNATAE------VGYNRDRFLFNPSACL--DEHLM-- 3647 

                   yFrfiGrvlGkAlyenrllDlrFarpFyKkLLgkpkgtdvtlhDleslDP
                   +F+f+G+++G A++ ++ lDl++a  ++K+L+++p    +tl+Dle++D 
     ff11573  3648 QFKFLGILMGVAIRTKKPLDLHLAPLVWKQLCCVP----LTLEDLEEVDL 3693 

                   elyksLvwLilvrrKleleeDlseeskslenditeveldmaLtFsivles
                    ++++L+ +            l++e+++++++++++ +   + +  +++ 
     ff11573  3694 LYVQTLNSI------------LHIEDSGITEESFHE-M---IPL-DSFVG 3726 

                   dfgevkvvELkpGGsnipVTeeNkkEYVhlvieyrlnkgvekqleAFreG
                   ++ ++k+v+++pGG++ip+T++N+kEYV+++iey + +++++q++A+reG
     ff11573  3727 QSADGKMVPIIPGGNSIPLTFSNRKEYVERAIEY-RLHEMDRQVAAVREG 3775 

                   FseVipeelLrylFdeeELeLLicGleeeidvddLksnTeyrggYtensq
                   +s+++p  lL+ l+++++Le+++cG++ ei+v++Lk++++yr + +e++q
     ff11573  3776 MSWIVPVPLLS-LLTAKQLEQMVCGMP-EISVEVLKKVVRYR-EVDEQHQ 3822 

                   tirfkkwFWevvesFtneerrkLLqFVTGssrlPASvgGFaaLspsNGpq
                    +   +wFW+++e+F+neer ++++FV G+srlP   ++ a++s     q
     ff11573  3823 LV---QWFWHTLEEFSNEERVLFMRFVSGRSRLP---ANTADIS-----Q 3861 

                   kFtIrkagsetlsdddrLPtAhTCfNrLkLPpYsSkeiLreKLLlAIneg
                   +F+I+k+++    ++d+LPt++TCf++L+LPpYsS+ ++ e+L++AIn++
     ff11573  3862 RFQIMKVDR----PYDSLPTSQTCFFQLRLPPYSSQLVMAERLRYAINNC 3907 

                   R.iggeGFgls<-*
                   R+i++++++ls   
     ff11573  3908 RsIDMDNYMLS    3918 

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