hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-05150422/chunk_1/iprscan-20080809-05150422.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: ff11592 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 292.6 7e-85 10 PF00096.16.fs Zinc finger, C2H2 type 289.8 5e-84 12 PF01096.9.fs Transcription factor S-II (TFIIS) 60.2 6.3e-18 11 PF01286.9.fs XPA protein N-terminal 57.8 1.1e-15 10 PF07754.2.fs Domain of unknown function (DUF1610) 39.9 1.1e-09 8 PF04032.6.fs RNAse P Rpr2/Rpp21/SNM1 subunit domain 19.9 8.4e-06 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 1/12 103 125 .. 1 24 [] 26.4 2.5e-05 PF00096.16.ls 1/10 103 125 .. 1 24 [] 28.4 2.4e-05 PF00096.16.ls 3/10 269 291 .. 1 24 [] 26.3 0.0001 PF00096.16.fs 5/12 269 291 .. 1 24 [] 24.3 8.1e-05 PF00096.16.ls 4/10 297 319 .. 1 24 [] 34.7 2.9e-07 PF00096.16.fs 6/12 297 319 .. 1 24 [] 32.8 6.5e-07 PF00096.16.ls 5/10 325 347 .. 1 24 [] 34.8 2.7e-07 PF00096.16.fs 7/12 325 347 .. 1 24 [] 32.8 6.2e-07 PF00096.16.ls 6/10 353 375 .. 1 24 [] 32.0 2e-06 PF00096.16.fs 8/12 353 375 .. 1 24 [] 30.0 3.2e-06 PF00096.16.fs 9/12 381 403 .. 1 24 [] 35.4 1.4e-07 PF00096.16.ls 7/10 381 403 .. 1 24 [] 37.3 4.7e-08 PF00096.16.fs 10/12 409 431 .. 1 24 [] 24.2 8.9e-05 PF00096.16.ls 8/10 409 431 .. 1 24 [] 26.1 0.00011 PF00096.16.fs 11/12 437 459 .. 1 24 [] 35.4 1.4e-07 PF00096.16.ls 9/10 437 459 .. 1 24 [] 37.3 4.7e-08 PF00096.16.fs 12/12 465 487 .. 1 24 [] 30.5 2.3e-06 PF00096.16.ls 10/10 465 487 .. 1 24 [] 32.5 1.4e-06 Alignments of top-scoring domains: PF00096.16.fs: domain 1 of 12, from 103 to 125: score 26.4, E = 2.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +CgksF s L+ H+++H ff11592 103 FKCQ-ECGKSFQMLSFLTEHQKIH 125 PF00096.16.ls: domain 1 of 10, from 103 to 125: score 28.4, E = 2.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +CgksF s L+ H+++H ff11592 103 FKCQ-ECGKSFQMLSFLTEHQKIH 125 PF00096.16.ls: domain 3 of 10, from 269 to 291: score 26.3, E = 0.0001 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C+ F+ s+L++H+r+H ff11592 269 FKCE-ECDSIFKWFSDLTKHKRIH 291 PF00096.16.fs: domain 5 of 12, from 269 to 291: score 24.3, E = 8.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C+ F+ s+L++H+r+H ff11592 269 FKCE-ECDSIFKWFSDLTKHKRIH 291 PF00096.16.ls: domain 4 of 10, from 297 to 319: score 34.7, E = 2.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+++++s+L H+r+H ff11592 297 YKCD-ECGKAYTQSSHLSEHRRIH 319 PF00096.16.fs: domain 6 of 12, from 297 to 319: score 32.8, E = 6.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+++++s+L H+r+H ff11592 297 YKCD-ECGKAYTQSSHLSEHRRIH 319 PF00096.16.ls: domain 5 of 10, from 325 to 347: score 34.8, E = 2.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++ s+L +H+rtH ff11592 325 YQCE-ECGKVFRTCSSLSNHKRTH 347 PF00096.16.fs: domain 7 of 12, from 325 to 347: score 32.8, E = 6.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F++ s+L +H+rtH ff11592 325 YQCE-ECGKVFRTCSSLSNHKRTH 347 PF00096.16.ls: domain 6 of 10, from 353 to 375: score 32.0, E = 2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg F++ s+L++H++tH ff11592 353 YTCE-ECGNIFKQLSDLTKHKKTH 375 PF00096.16.fs: domain 8 of 12, from 353 to 375: score 30.0, E = 3.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg F++ s+L++H++tH ff11592 353 YTCE-ECGNIFKQLSDLTKHKKTH 375 PF00096.16.fs: domain 9 of 12, from 381 to 403: score 35.4, E = 1.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F+++snL H+r+H ff11592 381 YKCD-ECGKNFTQSSNLIVHKRIH 403 PF00096.16.ls: domain 7 of 10, from 381 to 403: score 37.3, E = 4.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F+++snL H+r+H ff11592 381 YKCD-ECGKNFTQSSNLIVHKRIH 403 PF00096.16.fs: domain 10 of 12, from 409 to 431: score 24.2, E = 8.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg++F s+ ++H++tH ff11592 409 YKCE-ECGRVFMWFSDITKHKKTH 431 PF00096.16.ls: domain 8 of 10, from 409 to 431: score 26.1, E = 0.00011 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cg++F s+ ++H++tH ff11592 409 YKCE-ECGRVFMWFSDITKHKKTH 431 PF00096.16.fs: domain 11 of 12, from 437 to 459: score 35.4, E = 1.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F+++snL H+r+H ff11592 437 YKCD-ECGKNFTQSSNLIVHKRIH 459 PF00096.16.ls: domain 9 of 10, from 437 to 459: score 37.3, E = 4.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F+++snL H+r+H ff11592 437 YKCD-ECGKNFTQSSNLIVHKRIH 459 PF00096.16.fs: domain 12 of 12, from 465 to 487: score 30.5, E = 2.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++ s+L+ H +H ff11592 465 YKCE-KCGKAFTQFSHLTVHESIH 487 PF00096.16.ls: domain 10 of 10, from 465 to 487: score 32.5, E = 1.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F++ s+L+ H +H ff11592 465 YKCE-KCGKAFTQFSHLTVHESIH 487 //