hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-05150422/chunk_1/iprscan-20080809-05150422.nocrc
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Query sequence: ff11592
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 247.3    1.3e-69   9

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/9     103   125 ..     1    23 []    25.9   0.0055
SM00355      2/9     269   291 ..     1    23 []    26.5   0.0036
SM00355      3/9     297   319 ..     1    23 []    28.1   0.0012
SM00355      4/9     325   347 ..     1    23 []    28.3   0.0011
SM00355      5/9     353   375 ..     1    23 []    27.4    0.002
SM00355      6/9     381   403 ..     1    23 []    29.0  0.00063
SM00355      7/9     409   431 ..     1    23 []    26.7   0.0032
SM00355      8/9     437   459 ..     1    23 []    29.0  0.00063
SM00355      9/9     465   487 ..     1    23 []    26.3   0.0043

Alignments of top-scoring domains:
SM00355: domain 1 of 9, from 103 to 125: score 25.9, E = 0.0055
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ Cgksf   + L++H+++H   
     ff11592   103    FKCQE-CGKSFQMLsFLTEHQKIH    125  

SM00355: domain 2 of 9, from 269 to 291: score 26.5, E = 0.0036
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C+  f++ ++L++H r+H   
     ff11592   269    FKCEE-CDSIFKWFsDLTKHKRIH    291  

SM00355: domain 3 of 9, from 297 to 319: score 28.1, E = 0.0012
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk +++ ++L +H r+H   
     ff11592   297    YKCDE-CGKAYTQSsHLSEHRRIH    319  

SM00355: domain 4 of 9, from 325 to 347: score 28.3, E = 0.0011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+f++ ++L +H r+H   
     ff11592   325    YQCEE-CGKVFRTCsSLSNHKRTH    347  

SM00355: domain 5 of 9, from 353 to 375: score 27.4, E = 0.002
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg  f++ ++L++H ++H   
     ff11592   353    YTCEE-CGNIFKQLsDLTKHKKTH    375  

SM00355: domain 6 of 9, from 381 to 403: score 29.0, E = 0.00063
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f++ ++L+ H r+H   
     ff11592   381    YKCDE-CGKNFTQSsNLIVHKRIH    403  

SM00355: domain 7 of 9, from 409 to 431: score 26.7, E = 0.0032
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cg++f + ++ ++H ++H   
     ff11592   409    YKCEE-CGRVFMWFsDITKHKKTH    431  

SM00355: domain 8 of 9, from 437 to 459: score 29.0, E = 0.00063
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f++ ++L+ H r+H   
     ff11592   437    YKCDE-CGKNFTQSsNLIVHKRIH    459  

SM00355: domain 9 of 9, from 465 to 487: score 26.3, E = 0.0043
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk f++ ++L+ H  +H   
     ff11592   465    YKCEK-CGKAFTQFsHLTVHESIH    487  

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