hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-05290479/chunk_1/iprscan-20080809-05290479.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fg00167 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF09068.1.ls EF hand 295.0 1.3e-85 1 PF09068.1.fs EF hand 293.0 5e-85 1 PF09069.1.ls EF-hand 240.7 2.8e-69 1 PF09069.1.fs EF-hand 238.8 1.1e-68 1 PF00435.11.fs Spectrin repeat 177.1 3.7e-52 5 PF00435.11.ls Spectrin repeat 175.7 1.1e-49 4 PF00569.8.ls Zinc finger, ZZ type 93.3 6.9e-25 1 PF00569.8.fs Zinc finger, ZZ type 91.3 1.4e-24 1 PF00397.16.fs WW domain 47.0 3.5e-12 1 PF00397.16.ls WW domain 49.0 1.5e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00435.11.ls 1/4 172 279 .. 1 111 [] 20.6 0.00085 PF00435.11.ls 2/4 282 388 .. 1 111 [] 57.3 4.8e-14 PF00435.11.fs 3/5 282 388 .. 1 111 [] 55.3 6.1e-16 PF00435.11.ls 3/4 391 504 .. 1 111 [] 22.6 0.00057 PF00435.11.ls 4/4 636 742 .. 1 111 [] 75.2 1.9e-19 PF00435.11.fs 5/5 636 742 .. 1 111 [] 73.3 2.8e-21 PF00397.16.ls 1/1 759 788 .. 1 30 [] 49.0 1.5e-11 PF00397.16.fs 1/1 759 788 .. 1 30 [] 47.0 3.5e-12 PF09068.1.fs 1/1 789 909 .. 1 127 [] 293.0 5e-85 PF09068.1.ls 1/1 789 909 .. 1 127 [] 295.0 1.3e-85 PF09069.1.ls 1/1 913 1004 .. 1 94 [] 240.7 2.8e-69 PF09069.1.fs 1/1 913 1004 .. 1 94 [] 238.8 1.1e-68 PF00569.8.fs 1/1 1009 1054 .. 1 46 [] 91.3 1.4e-24 PF00569.8.ls 1/1 1009 1054 .. 1 46 [] 93.3 6.9e-25 Alignments of top-scoring domains: PF00435.11.ls: domain 1 of 4, from 172 to 279: score 20.6, E = 0.00085 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkqlkHk l F+r +l+ W++ ++++ s+ + dle++ ++ k+k fg00167 172 PALADFNRAWTELTDWLSLLDQVIKSQRVMVGDLEDINEMII--KQK 216 aleaelaahqdrvealninelaekLiideghyas.eeiqerleeLnerWe a + +l+++++++e+l + a+ L+ + ++++ i++r+e + +W+ fg00167 217 ATMQDLEQRRPQLEELI--TAAQNLKNKTSNQEArTIITDRIERIQNQWD 264 qLlelaaeRkqkLee<-* +++e ++ R+q+L e fg00167 265 EVQEHLQNRRQQLNE 279 PF00435.11.ls: domain 2 of 4, from 282 to 388: score 57.3, E = 4.8e-14 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkql.kH ++ q++ +++e+ + +++a L + + + + +v a++k+++ fg00167 282 KDSTQWLEAKEEAEQVLGQARAKL---ESWKEGPYTVDAIQKKItET 325 kaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWe k+l ++l ++q++v+ n +la kL d++ +++ + + e++n+ W fg00167 326 KQLAKDLRQWQTNVDVAN--DLALKLLRDYSADDTRKVHMITENINASWR 373 qLlelaaeRkqkLee<-* ++++++ eR+++Lee fg00167 374 SIHKRVSEREAALEE 388 PF00435.11.fs: domain 3 of 5, from 282 to 388: score 55.3, E = 6.1e-16 *->lllqqFqrdaddlesWieekealLssedyegkdleevqaLlkql.kH ++ q++ +++e+ + +++a L + + + + +v a++k+++ fg00167 282 KDSTQWLEAKEEAEQVLGQARAKL---ESWKEGPYTVDAIQKKItET 325 kaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWe k+l ++l ++q++v+ n +la kL d++ +++ + + e++n+ W fg00167 326 KQLAKDLRQWQTNVDVAN--DLALKLLRDYSADDTRKVHMITENINASWR 373 qLlelaaeRkqkLee<-* ++++++ eR+++Lee fg00167 374 SIHKRVSEREAALEE 388 PF00435.11.ls: domain 3 of 4, from 391 to 504: score 22.6, E = 0.00057 *->lllqqFqrdaddlesWieeke......alLssedyegkdleevqaLl llqqF d++ +++W++e+e++ + + ++ ++ +d +v++L+ fg00167 391 RLLQQFPLDLEKFLAWLTEAEttanvlQDATRKERLLEDSKGVKELM 437 kqlkHkaleaelaahqdrvealninelaekLiideg.hyaseeiqerlee k + ++l+ e++ah d +l+ e +k+ + ++ +++ +q rl++ fg00167 438 K--QWQDLQGEIEAHTDVYHNLD--ENSQKILRSLEgSDDAVLLQRRLDN 483 LnerWeqLlelaaeRkqkLee<-* n +W +L++ + Le+ fg00167 484 MNFKWSELRKKSLNIRSHLEA 504 PF00435.11.ls: domain 4 of 4, from 636 to 742: score 75.2, E = 1.9e-19 *->lllqqFqrdaddlesWieekealL.ssedyegkdleevqaLlkqlkH ++l+++q d+l++ ++++e + +s++ ++ ++++q +l+ k fg00167 636 ERLRELQEATDELDLKLRQAEVIKgSWQPVGDLLIDSLQDHLE--KV 680 kaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWe kal+ e+a ++++v ++n +la++L ++ g + s++ ++le+Ln+rW+ fg00167 681 KALRGEIAPLKENVSHVN--DLARQL-TTLGIQLSPYNLSTLEDLNTRWK 727 qLlelaaeRkqkLee<-* L+ ++++R ++L+e fg00167 728 LLQVAVEDRVRQLHE 742 PF00435.11.fs: domain 5 of 5, from 636 to 742: score 73.3, E = 2.8e-21 *->lllqqFqrdaddlesWieekealL.ssedyegkdleevqaLlkqlkH ++l+++q d+l++ ++++e + +s++ ++ ++++q +l+ k fg00167 636 ERLRELQEATDELDLKLRQAEVIKgSWQPVGDLLIDSLQDHLE--KV 680 kaleaelaahqdrvealninelaekLiideghyaseeiqerleeLnerWe kal+ e+a ++++v ++n +la++L ++ g + s++ ++le+Ln+rW+ fg00167 681 KALRGEIAPLKENVSHVN--DLARQL-TTLGIQLSPYNLSTLEDLNTRWK 727 qLlelaaeRkqkLee<-* L+ ++++R ++L+e fg00167 728 LLQVAVEDRVRQLHE 742 PF00397.16.ls: domain 1 of 1, from 759 to 788: score 49.0, E = 1.5e-11 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* ++ +We++++p++ pYY+Nh+T+tT W++P fg00167 759 VQGPWERAISPNKVPYYINHETQTTCWDHP 788 PF00397.16.fs: domain 1 of 1, from 759 to 788: score 47.0, E = 3.5e-12 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* ++ +We++++p++ pYY+Nh+T+tT W++P fg00167 759 VQGPWERAISPNKVPYYINHETQTTCWDHP 788 PF09068.1.fs: domain 1 of 1, from 789 to 909: score 293.0, E = 5e-85 *->kMtELfqsLraaDLNnIRFSAYRTAmKLRrlQKaLcLDLldlwnaie kMtEL+qsL aDLNn+RFSAYRTAmKLRrlQKaLcLDLl+l+ a++ fg00167 789 KMTELYQSL--ADLNNVRFSAYRTAMKLRRLQKALCLDLLSLSAACD 833 aFrqhgLnalqndtlldVsemitcLttlYenLekRLehthlVnVplcVDl a++qh+L+ qnd+ +d++++i+cLtt+Y++Le+ eh +lVnVplcVD+ fg00167 834 ALDQHNLK--QNDQPMDILQIINCLTTIYDRLEQ--EHNNLVNVPLCVDM 879 cLNWLLNVYDtqRsGkirVLSfKvgLitLC<-* cLNWLLNVYDt+R+G+irVLSfK+g+i+LC fg00167 880 CLNWLLNVYDTGRTGRIRVLSFKTGIISLC 909 PF09068.1.ls: domain 1 of 1, from 789 to 909: score 295.0, E = 1.3e-85 *->kMtELfqsLraaDLNnIRFSAYRTAmKLRrlQKaLcLDLldlwnaie kMtEL+qsL aDLNn+RFSAYRTAmKLRrlQKaLcLDLl+l+ a++ fg00167 789 KMTELYQSL--ADLNNVRFSAYRTAMKLRRLQKALCLDLLSLSAACD 833 aFrqhgLnalqndtlldVsemitcLttlYenLekRLehthlVnVplcVDl a++qh+L+ qnd+ +d++++i+cLtt+Y++Le+ eh +lVnVplcVD+ fg00167 834 ALDQHNLK--QNDQPMDILQIINCLTTIYDRLEQ--EHNNLVNVPLCVDM 879 cLNWLLNVYDtqRsGkirVLSfKvgLitLC<-* cLNWLLNVYDt+R+G+irVLSfK+g+i+LC fg00167 880 CLNWLLNVYDTGRTGRIRVLSFKTGIISLC 909 PF09069.1.ls: domain 1 of 1, from 913 to 1004: score 240.7, E = 2.8e-69 *->LedKYRYlFsqvsdsnglldqrklglLLhdaiqlPrqlGEvasFGgS LedKYRYlF+qv+ s+g++dqr+lglLLhd iq+PrqlGEvasFGgS fg00167 913 LEDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGS 959 NiEpSVrSCFeqvnlkpkIeanqFLdwlklEPpPQSlVWLPvLHRLa<-* NiEpSVrSCF+++n+kp+Iea+ FLdw++lE PQS+VWLPvLHR+a fg00167 960 NIEPSVRSCFQFANNKPEIEAALFLDWMRLE--PQSMVWLPVLHRVA 1004 PF09069.1.fs: domain 1 of 1, from 913 to 1004: score 238.8, E = 1.1e-68 *->LedKYRYlFsqvsdsnglldqrklglLLhdaiqlPrqlGEvasFGgS LedKYRYlF+qv+ s+g++dqr+lglLLhd iq+PrqlGEvasFGgS fg00167 913 LEDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGS 959 NiEpSVrSCFeqvnlkpkIeanqFLdwlklEPpPQSlVWLPvLHRLa<-* NiEpSVrSCF+++n+kp+Iea+ FLdw++lE PQS+VWLPvLHR+a fg00167 960 NIEPSVRSCFQFANNKPEIEAALFLDWMRLE--PQSMVWLPVLHRVA 1004 PF00569.8.fs: domain 1 of 1, from 1009 to 1054: score 91.3, E = 1.4e-24 *->ihkvytCdgCkeapiigvRYhClrCsdYDLCqsCfstGhkagkHkm< ++++++C++Cke+piig+RY++l++++YD+CqsCf++G++a++Hkm fg00167 1009 AKHQAKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRVAKGHKM 1054 -* fg00167 - - PF00569.8.ls: domain 1 of 1, from 1009 to 1054: score 93.3, E = 6.9e-25 *->ihkvytCdgCkeapiigvRYhClrCsdYDLCqsCfstGhkagkHkm< ++++++C++Cke+piig+RY++l++++YD+CqsCf++G++a++Hkm fg00167 1009 AKHQAKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRVAKGHKM 1054 -* fg00167 - - //