# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofg00659.fasta.nr -Q fg00659.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fg00659, 382 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6822508 sequences Expectation_n fit: rho(ln(x))= 5.8208+/-0.000189; mu= 7.3643+/- 0.011 mean_var=88.1705+/-16.745, 0's: 39 Z-trim: 47 B-trim: 2 in 1/66 Lambda= 0.136588 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62088188|dbj|BAD92541.1| poly(A) polymerase gam ( 382) 2493 501.0 1.5e-139 gi|114577515|ref|XP_001158896.1| PREDICTED: poly(A ( 670) 2493 501.1 2.4e-139 gi|114577511|ref|XP_515496.2| PREDICTED: poly(A) p ( 714) 2493 501.2 2.5e-139 gi|73969710|ref|XP_865689.1| PREDICTED: similar to ( 716) 2282 459.6 8.4e-127 gi|119620436|gb|EAX00031.1| poly(A) polymerase gam ( 425) 2178 438.9 8.2e-121 gi|116242699|sp|Q9BWT3.2|PAPOG_HUMAN Poly(A) polym ( 736) 2178 439.1 1.3e-120 gi|119620435|gb|EAX00030.1| poly(A) polymerase gam ( 743) 2178 439.1 1.3e-120 gi|13641252|gb|AAK31791.1| SRP RNA 3' adenylating ( 736) 2172 437.9 2.9e-120 gi|119620437|gb|EAX00032.1| poly(A) polymerase gam ( 430) 2167 436.8 3.7e-120 gi|10435509|dbj|BAB14604.1| unnamed protein produc ( 675) 2167 436.9 5.3e-120 gi|109102989|ref|XP_001115228.1| PREDICTED: simila ( 736) 2128 429.2 1.2e-117 gi|194220708|ref|XP_001917579.1| PREDICTED: simila ( 741) 2028 409.5 1e-111 gi|146186839|gb|AAI40626.1| PAPOLG protein [Bos ta ( 740) 1999 403.8 5.3e-110 gi|73969708|ref|XP_865672.1| PREDICTED: similar to ( 427) 1982 400.3 3.5e-109 gi|73969704|ref|XP_865640.1| PREDICTED: similar to ( 694) 1982 400.5 5.1e-109 gi|73969700|ref|XP_852387.1| PREDICTED: similar to ( 738) 1982 400.5 5.4e-109 gi|73969706|ref|XP_865659.1| PREDICTED: similar to ( 744) 1982 400.5 5.4e-109 gi|81885554|sp|Q6PCL9.1|PAPOG_MOUSE Poly(A) polyme ( 739) 1965 397.1 5.5e-108 gi|26330928|dbj|BAC29194.1| unnamed protein produc ( 739) 1954 395.0 2.5e-107 gi|149044811|gb|EDL97997.1| poly(A) polymerase gam ( 739) 1942 392.6 1.3e-106 gi|148675951|gb|EDL07898.1| poly(A) polymerase gam ( 650) 1520 309.4 1.2e-81 gi|10434763|dbj|BAB14368.1| unnamed protein produc ( 302) 1503 305.8 6.8e-81 gi|10436578|dbj|BAB14858.1| unnamed protein produc ( 302) 1495 304.2 2e-80 gi|126303830|ref|XP_001375093.1| PREDICTED: simila ( 748) 1372 280.3 8.3e-73 gi|119620438|gb|EAX00033.1| poly(A) polymerase gam ( 282) 1296 265.0 1.2e-68 gi|62822128|gb|AAY14677.1| unknown [Homo sapiens] ( 270) 1295 264.8 1.4e-68 gi|13365529|dbj|BAB39138.1| poly(A) polymerase [Ca ( 747) 1289 263.9 7e-68 gi|34783795|gb|AAH56818.1| Poly(A) polymerase gamm ( 744) 1282 262.5 1.8e-67 gi|122890852|emb|CAM12938.1| poly(A) polymerase ga ( 744) 1282 262.5 1.8e-67 gi|13365531|dbj|BAB39139.1| poly(A) polymerase [Ca ( 747) 1271 260.4 8.1e-67 gi|47221727|emb|CAG10199.1| unnamed protein produc ( 685) 1253 256.8 8.9e-66 gi|49522894|gb|AAH75107.1| Poly(A) polymerase beta ( 752) 1244 255.1 3.3e-65 gi|73671771|gb|AAZ80291.1| SRP 3'-adenylating prot ( 751) 1230 252.3 2.2e-64 gi|55727879|emb|CAH90692.1| hypothetical protein [ ( 506) 1142 234.8 2.7e-59 gi|10433147|dbj|BAB13919.1| unnamed protein produc ( 501) 1111 228.7 1.8e-57 gi|119620434|gb|EAX00029.1| poly(A) polymerase gam ( 508) 1106 227.7 3.7e-57 gi|56207051|emb|CAI25659.1| poly(A) polymerase gam ( 255) 1079 222.2 8.5e-56 gi|18044597|gb|AAH19635.1| Papolg protein [Mus mus ( 262) 1051 216.7 4e-54 gi|116283528|gb|AAH16738.1| PAPOLG protein [Homo s ( 496) 1037 214.1 4.5e-53 gi|18606188|gb|AAH23030.1| Papolg protein [Mus mus ( 262) 1021 210.8 2.4e-52 gi|3127182|gb|AAC16061.1| poly(A) polymerase II [G ( 621) 981 203.2 1.1e-49 gi|118091978|ref|XP_421352.2| PREDICTED: similar t ( 737) 979 202.8 1.7e-49 gi|149636914|ref|XP_001511509.1| PREDICTED: simila ( 736) 954 197.9 5.1e-48 gi|74354794|gb|AAI02482.1| PAPOLA protein [Bos tau ( 693) 950 197.1 8.4e-48 gi|119602049|gb|EAW81643.1| poly(A) polymerase alp ( 495) 939 194.8 2.9e-47 gi|119602055|gb|EAW81649.1| poly(A) polymerase alp ( 744) 941 195.3 3e-47 gi|59803092|sp|P51003.4|PAPOA_HUMAN Poly(A) polyme ( 745) 939 194.9 4e-47 gi|28207949|emb|CAD62628.1| unnamed protein produc ( 752) 939 195.0 4e-47 gi|149044213|gb|EDL97595.1| poly (A) polymerase al ( 739) 938 194.7 4.6e-47 gi|73964450|ref|XP_537551.2| PREDICTED: similar to ( 812) 935 194.2 7.4e-47 >>gi|62088188|dbj|BAD92541.1| poly(A) polymerase gamma v (382 aa) initn: 2493 init1: 2493 opt: 2493 Z-score: 2660.3 bits: 501.0 E(): 1.5e-139 Smith-Waterman score: 2493; 100.000% identity (100.000% similar) in 382 aa overlap (1-382:1-382) 10 20 30 40 50 60 fg0065 RTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENHLEWVGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENHLEWVGL 10 20 30 40 50 60 70 80 90 100 110 120 fg0065 VESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHKDNNYVSMWFLGIIFRRVENAESVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHKDNNYVSMWFLGIIFRRVENAESVN 70 80 90 100 110 120 130 140 150 160 170 180 fg0065 IDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQLHHYLPAEILQKKKKQSLSDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 IDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQLHHYLPAEILQKKKKQSLSDV 130 140 150 160 170 180 190 200 210 220 230 240 fg0065 NRSSGGLQSKRLSLDSSCLDSSRDTDNGTPFNSPASKSDSPSVGETERNSAEPAAVIVEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 NRSSGGLQSKRLSLDSSCLDSSRDTDNGTPFNSPASKSDSPSVGETERNSAEPAAVIVEK 190 200 210 220 230 240 250 260 270 280 290 300 fg0065 PLSVPPAQGLSIPVIGAKVDSTVKTVSPPTVCTIPTVVGRNVIPRITTPHNPAQGQPHLN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PLSVPPAQGLSIPVIGAKVDSTVKTVSPPTVCTIPTVVGRNVIPRITTPHNPAQGQPHLN 250 260 270 280 290 300 310 320 330 340 350 360 fg0065 GMSNITKTVTPKRSHSPSIDGTPKRLKDVEKDAIGGESMPIPTIDTSRKKRLPSKELPDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GMSNITKTVTPKRSHSPSIDGTPKRLKDVEKDAIGGESMPIPTIDTSRKKRLPSKELPDS 310 320 330 340 350 360 370 380 fg0065 SSPVPANNIRVIKNSIRLTLNR :::::::::::::::::::::: gi|620 SSPVPANNIRVIKNSIRLTLNR 370 380 >>gi|114577515|ref|XP_001158896.1| PREDICTED: poly(A) po (670 aa) initn: 2493 init1: 2493 opt: 2493 Z-score: 2656.8 bits: 501.1 E(): 2.4e-139 Smith-Waterman score: 2493; 100.000% identity (100.000% similar) in 382 aa overlap (1-382:289-670) 10 20 30 fg0065 RTVMVEEFKQGLAVTDEILQGKSDWSKLLE :::::::::::::::::::::::::::::: gi|114 VNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLE 260 270 280 290 300 310 40 50 60 70 80 90 fg0065 PPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG 320 330 340 350 360 370 100 110 120 130 140 150 fg0065 NKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKI 380 390 400 410 420 430 160 170 180 190 200 210 fg0065 EATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTP 440 450 460 470 480 490 220 230 240 250 260 270 fg0065 FNSPASKSDSPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSPPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FNSPASKSDSPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSPPT 500 510 520 530 540 550 280 290 300 310 320 330 fg0065 VCTIPTVVGRNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKRLKDVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VCTIPTVVGRNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKRLKDVE 560 570 580 590 600 610 340 350 360 370 380 fg0065 KDAIGGESMPIPTIDTSRKKRLPSKELPDSSSPVPANNIRVIKNSIRLTLNR :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KDAIGGESMPIPTIDTSRKKRLPSKELPDSSSPVPANNIRVIKNSIRLTLNR 620 630 640 650 660 670 >>gi|114577511|ref|XP_515496.2| PREDICTED: poly(A) polym (714 aa) initn: 2493 init1: 2493 opt: 2493 Z-score: 2656.4 bits: 501.2 E(): 2.5e-139 Smith-Waterman score: 2493; 100.000% identity (100.000% similar) in 382 aa overlap (1-382:333-714) 10 20 30 fg0065 RTVMVEEFKQGLAVTDEILQGKSDWSKLLE :::::::::::::::::::::::::::::: gi|114 VNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLE 310 320 330 340 350 360 40 50 60 70 80 90 fg0065 PPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG 370 380 390 400 410 420 100 110 120 130 140 150 fg0065 NKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKI 430 440 450 460 470 480 160 170 180 190 200 210 fg0065 EATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTP 490 500 510 520 530 540 220 230 240 250 260 270 fg0065 FNSPASKSDSPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSPPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FNSPASKSDSPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSPPT 550 560 570 580 590 600 280 290 300 310 320 330 fg0065 VCTIPTVVGRNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKRLKDVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VCTIPTVVGRNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKRLKDVE 610 620 630 640 650 660 340 350 360 370 380 fg0065 KDAIGGESMPIPTIDTSRKKRLPSKELPDSSSPVPANNIRVIKNSIRLTLNR :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KDAIGGESMPIPTIDTSRKKRLPSKELPDSSSPVPANNIRVIKNSIRLTLNR 670 680 690 700 710 >>gi|73969710|ref|XP_865689.1| PREDICTED: similar to pol (716 aa) initn: 2151 init1: 1374 opt: 2282 Z-score: 2431.7 bits: 459.6 E(): 8.4e-127 Smith-Waterman score: 2282; 91.473% identity (95.349% similar) in 387 aa overlap (1-382:333-716) 10 20 30 fg0065 RTVMVEEFKQGLAVTDEILQGKSDWSKLLE :::::::::::::::::::::::::::::: gi|739 VNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLE 310 320 330 340 350 360 40 50 60 70 80 90 fg0065 PPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 PPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG 370 380 390 400 410 420 100 110 120 130 140 150 fg0065 NKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 NKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKI 430 440 450 460 470 480 160 170 180 190 200 210 fg0065 EATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTP ::::::::::::::::::::::::::::::.:::.: :::: ::::.::::::::::::: gi|739 EATHVKKKQLHHYLPAEILQKKKKQSLSDVSRSSSGPQSKRSSLDSNCLDSSRDTDNGTP 490 500 510 520 530 540 220 230 240 250 260 fg0065 FNSPAS-----KSDSPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKT ::::.: : : : ::::::.:::.::.::::::::::::::::::::::::.::. gi|739 FNSPVSINKPSKPDLPPSGETERNNAEPTAVVVEKPLSVPPAQGLSIPVIGAKVDSAVKA 550 560 570 580 590 600 270 280 290 300 310 320 fg0065 VSPPTVCTIPTVVGRNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKR ::::.:::::::::::::::: :::::.:::::::::. ::.:: ::::::::::. :: gi|739 VSPPAVCTIPTVVGRNVIPRIPTPHNPTQGQPHLNGMA--TKNVTHKRSHSPSIDGSSKR 610 620 630 640 650 660 330 340 350 360 370 380 fg0065 LKDVEKDAIGGESMPIPTIDTSRKKRLPSKELPDSSSPVPANNIRVIKNSIRLTLNR :::.:::::: : :::::::::::::::::::::::::::::::::::::::::::: gi|739 LKDIEKDAIG-ECMPIPTIDTSRKKRLPSKELPDSSSPVPANNIRVIKNSIRLTLNR 670 680 690 700 710 >>gi|119620436|gb|EAX00031.1| poly(A) polymerase gamma, (425 aa) initn: 2479 init1: 2167 opt: 2178 Z-score: 2324.1 bits: 438.9 E(): 8.2e-121 Smith-Waterman score: 2439; 94.554% identity (94.554% similar) in 404 aa overlap (1-382:22-425) 10 20 30 fg0065 RTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYR ::::::::::::::::::::::::::::::::::::::: gi|119 MPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYR 10 20 30 40 50 60 40 50 60 70 80 90 fg0065 HYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHKDNN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPGNKEHHKDNN 70 80 90 100 110 120 100 110 120 130 140 150 fg0065 YVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQ 130 140 150 160 170 180 160 170 180 190 200 210 fg0065 LHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTPFNSPASKSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTPFNSPASKSD 190 200 210 220 230 240 220 230 240 250 260 270 fg0065 SPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSPPTVCTIPTVVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSPPTVCTIPTVVG 250 260 270 280 290 300 280 290 300 310 320 330 fg0065 RNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKRLKDVEK-------- :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKRLKDVEKFIRLESTF 310 320 330 340 350 360 340 350 360 370 fg0065 --------------DAIGGESMPIPTIDTSRKKRLPSKELPDSSSPVPANNIRVIKNSIR :::::::::::::::::::::::::::::::::::::::::::::: gi|119 KDPRTAEERKRKSVDAIGGESMPIPTIDTSRKKRLPSKELPDSSSPVPANNIRVIKNSIR 370 380 390 400 410 420 380 fg0065 LTLNR ::::: gi|119 LTLNR >>gi|116242699|sp|Q9BWT3.2|PAPOG_HUMAN Poly(A) polymeras (736 aa) initn: 2479 init1: 2167 opt: 2178 Z-score: 2320.7 bits: 439.1 E(): 1.3e-120 Smith-Waterman score: 2439; 94.554% identity (94.554% similar) in 404 aa overlap (1-382:333-736) 10 20 30 fg0065 RTVMVEEFKQGLAVTDEILQGKSDWSKLLE :::::::::::::::::::::::::::::: gi|116 VNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLE 310 320 330 340 350 360 40 50 60 70 80 90 fg0065 PPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 PPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG 370 380 390 400 410 420 100 110 120 130 140 150 fg0065 NKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 NKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKI 430 440 450 460 470 480 160 170 180 190 200 210 fg0065 EATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 EATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTP 490 500 510 520 530 540 220 230 240 250 260 270 fg0065 FNSPASKSDSPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSPPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 FNSPASKSDSPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSPPT 550 560 570 580 590 600 280 290 300 310 320 330 fg0065 VCTIPTVVGRNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKRLKDVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 VCTIPTVVGRNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKRLKDVE 610 620 630 640 650 660 340 350 360 fg0065 K----------------------DAIGGESMPIPTIDTSRKKRLPSKELPDSSSPVPANN : ::::::::::::::::::::::::::::::::::::: gi|116 KFIRLESTFKDPRTAEERKRKSVDAIGGESMPIPTIDTSRKKRLPSKELPDSSSPVPANN 670 680 690 700 710 720 370 380 fg0065 IRVIKNSIRLTLNR :::::::::::::: gi|116 IRVIKNSIRLTLNR 730 >>gi|119620435|gb|EAX00030.1| poly(A) polymerase gamma, (743 aa) initn: 2479 init1: 2167 opt: 2178 Z-score: 2320.7 bits: 439.1 E(): 1.3e-120 Smith-Waterman score: 2439; 94.554% identity (94.554% similar) in 404 aa overlap (1-382:333-736) 10 20 30 fg0065 RTVMVEEFKQGLAVTDEILQGKSDWSKLLE :::::::::::::::::::::::::::::: gi|119 VNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLE 310 320 330 340 350 360 40 50 60 70 80 90 fg0065 PPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG 370 380 390 400 410 420 100 110 120 130 140 150 fg0065 NKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKI 430 440 450 460 470 480 160 170 180 190 200 210 fg0065 EATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTP 490 500 510 520 530 540 220 230 240 250 260 270 fg0065 FNSPASKSDSPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSPPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 FNSPASKSDSPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSPPT 550 560 570 580 590 600 280 290 300 310 320 330 fg0065 VCTIPTVVGRNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKRLKDVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VCTIPTVVGRNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKRLKDVE 610 620 630 640 650 660 340 350 360 fg0065 K----------------------DAIGGESMPIPTIDTSRKKRLPSKELPDSSSPVPANN : ::::::::::::::::::::::::::::::::::::: gi|119 KFIRLESTFKDPRTAEERKRKSVDAIGGESMPIPTIDTSRKKRLPSKELPDSSSPVPANN 670 680 690 700 710 720 370 380 fg0065 IRVIKNSIRLTLNR :::::::::::::: gi|119 IRVIKNSIRLTLNRCSHLFFK 730 740 >>gi|13641252|gb|AAK31791.1| SRP RNA 3' adenylating enzy (736 aa) initn: 2473 init1: 2161 opt: 2172 Z-score: 2314.4 bits: 437.9 E(): 2.9e-120 Smith-Waterman score: 2433; 94.307% identity (94.307% similar) in 404 aa overlap (1-382:333-736) 10 20 30 fg0065 RTVMVEEFKQGLAVTDEILQGKSDWSKLLE :::::::::::::::::::::::::::::: gi|136 VNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLE 310 320 330 340 350 360 40 50 60 70 80 90 fg0065 PPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 PPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG 370 380 390 400 410 420 100 110 120 130 140 150 fg0065 NKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 NKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKI 430 440 450 460 470 480 160 170 180 190 200 210 fg0065 EATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 EATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTP 490 500 510 520 530 540 220 230 240 250 260 270 fg0065 FNSPASKSDSPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSPPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 FNSPASKSDSPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSPPT 550 560 570 580 590 600 280 290 300 310 320 330 fg0065 VCTIPTVVGRNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKRLKDVE :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: gi|136 VCTIPTVVGRNVIPRIITPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKRLKDVE 610 620 630 640 650 660 340 350 360 fg0065 K----------------------DAIGGESMPIPTIDTSRKKRLPSKELPDSSSPVPANN : ::::::::::::::::::::::::::::::::::::: gi|136 KFIRLESTFKDPRTAEERKRKSVDAIGGESMPIPTIDTSRKKRLPSKELPDSSSPVPANN 670 680 690 700 710 720 370 380 fg0065 IRVIKNSIRLTLNR :::::::::::::: gi|136 IRVIKNSIRLTLNR 730 >>gi|119620437|gb|EAX00032.1| poly(A) polymerase gamma, (430 aa) initn: 2167 init1: 2167 opt: 2167 Z-score: 2312.4 bits: 436.8 E(): 3.7e-120 Smith-Waterman score: 2167; 100.000% identity (100.000% similar) in 331 aa overlap (1-331:95-425) 10 20 30 fg0065 RTVMVEEFKQGLAVTDEILQGKSDWSKLLE :::::::::::::::::::::::::::::: gi|119 VNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLE 70 80 90 100 110 120 40 50 60 70 80 90 fg0065 PPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG 130 140 150 160 170 180 100 110 120 130 140 150 fg0065 NKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKI 190 200 210 220 230 240 160 170 180 190 200 210 fg0065 EATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTP 250 260 270 280 290 300 220 230 240 250 260 270 fg0065 FNSPASKSDSPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSPPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 FNSPASKSDSPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSPPT 310 320 330 340 350 360 280 290 300 310 320 330 fg0065 VCTIPTVVGRNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKRLKDVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VCTIPTVVGRNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKRLKDVE 370 380 390 400 410 420 340 350 360 370 380 fg0065 KDAIGGESMPIPTIDTSRKKRLPSKELPDSSSPVPANNIRVIKNSIRLTLNR : gi|119 KVKLQL 430 >>gi|10435509|dbj|BAB14604.1| unnamed protein product [H (675 aa) initn: 2167 init1: 2167 opt: 2167 Z-score: 2309.6 bits: 436.9 E(): 5.3e-120 Smith-Waterman score: 2167; 100.000% identity (100.000% similar) in 331 aa overlap (1-331:330-660) 10 20 30 fg0065 RTVMVEEFKQGLAVTDEILQGKSDWSKLLE :::::::::::::::::::::::::::::: gi|104 VNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLE 300 310 320 330 340 350 40 50 60 70 80 90 fg0065 PPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 PPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG 360 370 380 390 400 410 100 110 120 130 140 150 fg0065 NKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 NKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKI 420 430 440 450 460 470 160 170 180 190 200 210 fg0065 EATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 EATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDNGTP 480 490 500 510 520 530 220 230 240 250 260 270 fg0065 FNSPASKSDSPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSPPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 FNSPASKSDSPSVGETERNSAEPAAVIVEKPLSVPPAQGLSIPVIGAKVDSTVKTVSPPT 540 550 560 570 580 590 280 290 300 310 320 330 fg0065 VCTIPTVVGRNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKRLKDVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 VCTIPTVVGRNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSIDGTPKRLKDVE 600 610 620 630 640 650 340 350 360 370 380 fg0065 KDAIGGESMPIPTIDTSRKKRLPSKELPDSSSPVPANNIRVIKNSIRLTLNR : gi|104 KFIRLESTFKDPRTAE 660 670 382 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sat Aug 9 05:33:38 2008 done: Sat Aug 9 05:36:09 2008 Total Scan time: 800.810 Total Display time: 0.110 Function used was FASTA [version 34.26.5 April 26, 2007]