hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-05361046/chunk_1/iprscan-20080809-05361046.nocrc
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Query sequence: fg00659
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF04926.5.fs Poly(A) polymerase predicted RNA binding   274.2    8.3e-81   1
PF04926.5.ls Poly(A) polymerase predicted RNA binding   275.9    7.2e-80   1
PF04928.8.fs Poly(A) polymerase central domain           40.1    1.2e-10   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF04928.8.fs   1/1       1    32 [.   233   264 .]    40.1  1.2e-10
PF04926.5.fs   1/1      33   175 ..     1   191 []   274.2  8.3e-81
PF04926.5.ls   1/1      33   175 ..     1   191 []   275.9  7.2e-80

Alignments of top-scoring domains:
PF04928.8.fs: domain 1 of 1, from 1 to 32: score 40.1, E = 1.2e-10
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   *->lkvIleEfkrGheIcdeIeegkatWsdLFEph<-*
                      + v++eEfk+G++++deI++gk++Ws+L+Ep+   
     fg00659     1    RTVMVEEFKQGLAVTDEILQGKSDWSKLLEPP    32   

PF04926.5.fs: domain 1 of 1, from 33 to 175: score 274.2, E = 8.3e-81
                   *->nFFsrYKhYlqitaaAadtaedhLkWsGlVESKlRlLVlkLErnegI
                      nFF++Y+hY+++ta+A+ t+e+hL+W+GlVESK+R+LV++LErne+I
     fg00659    33    NFFQKYRHYIVLTASAS-TEENHLEWVGLVESKIRVLVGNLERNEFI 78   

                   elAHpnPkkFedtyecssdeeaeniankyglekgedalkalklaedenne
                   +lAH+nP++F+ ++e+++d++                             
     fg00659    79 TLAHVNPQSFPGNKEHHKDNN----------------------------- 99   

                   EeaekvesKaevrltvwFIGLefekskksdevkklDItypiqeFknlCkn
                               ++++wF+G+ f++ +++ e++++D+ty+iq+F+   ++
     fg00659   100 ------------YVSMWFLGIIFRRVENA-ESVNIDLTYDIQSFT---DT 133  

                   vnrqasnvkgikegCqmeIdikhVKrkqLpdevfedglkRpkks<-*
                   v+rqa+n++++keg  m+I+++hVK+kqL++++++++l+++kk+   
     fg00659   134 VYRQANNINMLKEG--MKIEATHVKKKQLHHYLPAEILQKKKKQ    175  

PF04926.5.ls: domain 1 of 1, from 33 to 175: score 275.9, E = 7.2e-80
                   *->nFFsrYKhYlqitaaAadtaedhLkWsGlVESKlRlLVlkLErnegI
                      nFF++Y+hY+++ta+A+ t+e+hL+W+GlVESK+R+LV++LErne+I
     fg00659    33    NFFQKYRHYIVLTASAS-TEENHLEWVGLVESKIRVLVGNLERNEFI 78   

                   elAHpnPkkFedtyecssdeeaeniankyglekgedalkalklaedenne
                   +lAH+nP++F+ ++e+++d++                             
     fg00659    79 TLAHVNPQSFPGNKEHHKDNN----------------------------- 99   

                   EeaekvesKaevrltvwFIGLefekskksdevkklDItypiqeFknlCkn
                               ++++wF+G+ f++ +++ e++++D+ty+iq+F+   ++
     fg00659   100 ------------YVSMWFLGIIFRRVENA-ESVNIDLTYDIQSFT---DT 133  

                   vnrqasnvkgikegCqmeIdikhVKrkqLpdevfedglkRpkks<-*
                   v+rqa+n++++keg  m+I+++hVK+kqL++++++++l+++kk+   
     fg00659   134 VYRQANNINMLKEG--MKIEATHVKKKQLHHYLPAEILQKKKKQ    175  

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