hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-05431656/chunk_1/iprscan-20080809-05431656.nocrc
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Query sequence: fg01127
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00048.11.fs Small cytokines (intecrine/chemokine), inter    62.7    8.5e-18   1
PF00048.11.ls Small cytokines (intecrine/chemokine), inter    64.6    2.9e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00048.11.fs   1/1      42   107 ..     1    70 []    62.7  8.5e-18
PF00048.11.ls   1/1      42   107 ..     1    70 []    64.6  2.9e-16

Alignments of top-scoring domains:
PF00048.11.fs: domain 1 of 1, from 42 to 107: score 62.7, E = 8.5e-18
                   *->apvavdtplrCrClsytsrkIppkriksyeviptsshCpkpaVIftt
                       pv+   + rC C +++++++ + ++k++++  ++++C   ++++ +
     fg01127    42    KPVS--LSYRCPC-RFFESHVARANVKHLKIL-NTPNCAL-QIVARL 83   

                   K.nGrevCaDPkakWVqkyikkiL<-*
                   K+n+r+vC DPk kW+q+y++k+L   
     fg01127    84 KnNNRQVCIDPKLKWIQEYLEKAL    107  

PF00048.11.ls: domain 1 of 1, from 42 to 107: score 64.6, E = 2.9e-16
                   *->apvavdtplrCrClsytsrkIppkriksyeviptsshCpkpaVIftt
                       pv+   + rC C +++++++ + ++k++++  ++++C   ++++ +
     fg01127    42    KPVS--LSYRCPC-RFFESHVARANVKHLKIL-NTPNCAL-QIVARL 83   

                   K.nGrevCaDPkakWVqkyikkiL<-*
                   K+n+r+vC DPk kW+q+y++k+L   
     fg01127    84 KnNNRQVCIDPKLKWIQEYLEKAL    107  

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