hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-05503636/chunk_1/iprscan-20080809-05503636.nocrc
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Query sequence: fg01236
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00146                                                 369.2   2.6e-106   1
SM00145                                                 195.7    4.2e-54   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00145      1/1    1560  1748 ..     1   232 []   195.7  4.2e-54
SM00146      1/1    1865  2118 ..     1   336 []   369.2 2.6e-106

Alignments of top-scoring domains:
SM00145: domain 1 of 1, from 1560 to 1748: score 195.7, E = 4.2e-54
                   *->drdlkpsldseerdrLeaIlkydplyeLteeekdLiWkfRhyyltnn
                        +++ +++++++  ++  +++ +++++ +e  +L++ +++  ++++
     fg01236  1560    KDNVNLAWSISPYLAVQLPARFKNTEAIGNEVTRLVR-LDPGAVSDV 1605 

                   pkALplvcgPKfLlsvnWsdadevaqalsLLkkWvnapldpedALELLdp
                   p+A+      KfL  v W+  d+ a+ ls++ +W  ap dp   L ++++
     fg01236  1606 PEAI------KFL--VTWHTIDADAPELSHVLCW--APTDPPTGLSYFSS 1645 

                   kFpdnNvpkVRayAVsrLesasDeeLllYLLQLVQALKYEnlddikslec
                   ++p+  +p   +y V++L+s++++ +l+Y++Q+VQAL+Y+          
     fg01236  1646 MYPP--HPLTAQYGVKVLRSFPPDAILFYIPQIVQALRYD---------- 1683 

                   efdqdvsasktkeedgpyldSpLarFLLeRAlkNpriGhffyWyLksEie
                                     +++++ +++L+ A+k++ ++h+f+W++k++i 
     fg01236  1684 ------------------KMGYVREYILWAASKSQLLAHQFIWNMKTNI- 1714 

                   kddslhdphv.serfgllleaylrgctgthlkelkk<-*
                     +++++ h++++++g ll+++++++tg  + + k+   
     fg01236  1715 --YLDEEGHQkDPDIGDLLDQLVEEITGSLSGPAKD    1748 

SM00146: domain 1 of 1, from 1865 to 2118: score 369.2, E = 2.6e-106
                   *->avIfKggDDLRQDalvlQllrlmdklLkkdsetrrldLhlrpYkvlp
                      a IfK+gDD+RQD+l+lQ++ l++++ +      +ldL ++pY+v++
     fg01236  1865    AAIFKVGDDCRQDMLALQIIDLFKNIFQLV----GLDLFVFPYRVVA 1907 

                   tgpksGliEvvpnsetlheIlkelrkkkkipldykqlfmldmlvaeieka
                   t p++G+iE++p+++++ ++ +                            
     fg01236  1908 TAPGCGVIECIPDCTSRDQLGR---------------------------- 1929 

                   qyptitlakakkkalrykhatlleklkvfegatsafkppvLydwfkekfp
                                                      +++  +yd+f+++++
     fg01236  1930 -----------------------------------QTDFGMYDYFTRQYG 1944 

                   dpn.eiyfeardnFtrScAgySvvtYiLGlGDRHndNImldrktGhlfHI
                   d++++++++ar nF+rS+A+yS   ++L+++DRHn+NImld k Gh++HI
     fg01236  1945 DEStLAFQQARYNFIRSMAAYSLLLFLLQIKDRHNGNIMLD-KKGHIIHI 1993 

                   DFGfilgngpklpgfklfgRErvPFrLTpemvdvmGgGgkpsgvfglFrs
                   DFGf+++++p+  +      + +  +LT emv++mGg ++++  f++F++
     fg01236  1994 DFGFMFESSPGGNLG-----WEPDIKLTDEMVMIMGG-KMEATPFKWFME 2037 

                   lCerayralRknsnllmnllelMlsdglmpewrsgekdikylrerlrldv
                   +C+r+y+a+R +++++++l+ lMl++gl p++r++  +ik l++r+ ++ 
     fg01236  2038 MCVRGYLAVRPYMDAVVSLVTLMLDTGL-PCFRGQ--TIKLLKHRFSPN- 2083 

                   lsdeeaaeyfkktektkliessleslttrlndlfhllaql<-*
                   ++++eaa++++k     +i+s+  s+ +r++d+++++++    
     fg01236  2084 MTEREAANFIMK-----VIQSCFLSNRSRTYDMIQYYQND    2118 

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