hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-06043104/chunk_1/iprscan-20080809-06043104.nocrc
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Query sequence: fg01250
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00023.20.ls Ankyrin repeat                                 108.3    2.1e-29   3
PF00023.20.fs Ankyrin repeat                                 102.3    1.3e-27   3
PF00560.23.ls Leucine Rich Repeat                             21.8     0.0023   3
PF07723.3.ls Leucine Rich Repeat                             12.7       0.27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00023.20.ls   1/3     228   260 ..     1    33 []    26.2   0.0001
PF00023.20.fs   1/3     228   260 ..     1    33 []    24.2  8.9e-06
PF00023.20.fs   2/3     261   293 ..     1    33 []    39.3  5.5e-10
PF00023.20.ls   2/3     261   293 ..     1    33 []    41.3    3e-09
PF00023.20.fs   3/3     297   329 ..     1    33 []    38.7  8.2e-10
PF00023.20.ls   3/3     297   329 ..     1    33 []    40.7  4.6e-09
PF00560.23.ls   3/3     830   856 ..     1    24 []     8.2      7.8
PF07723.3.ls   1/1     830   857 ..     1    26 []    12.7     0.27

Alignments of top-scoring domains:
PF00023.20.ls: domain 1 of 3, from 228 to 260: score 26.2, E = 0.0001
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G+T LH A++ g+l+ v++L+ qG  ln +d    
     fg01250   228    MGETLLHRACIEGQLRRVQDLVRQGHPLNPRDY    260  

PF00023.20.fs: domain 1 of 3, from 228 to 260: score 24.2, E = 8.9e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G+T LH A++ g+l+ v++L+ qG  ln +d    
     fg01250   228    MGETLLHRACIEGQLRRVQDLVRQGHPLNPRDY    260  

PF00023.20.fs: domain 2 of 3, from 261 to 293: score 39.3, E = 5.5e-10
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G+TPLH A+ +g+le+v++Ll++GA ++       
     fg01250   261    CGWTPLHEACNYGHLEIVRFLLDHGAAVDDPGG    293  

PF00023.20.ls: domain 2 of 3, from 261 to 293: score 41.3, E = 3e-09
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G+TPLH A+ +g+le+v++Ll++GA ++       
     fg01250   261    CGWTPLHEACNYGHLEIVRFLLDHGAAVDDPGG    293  

PF00023.20.fs: domain 3 of 3, from 297 to 329: score 38.7, E = 8.2e-10
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G TPLH A  +g+ ev++lLl++GA++ ++++   
     fg01250   297    EGITPLHDALNCGHFEVAELLLERGASVTLRTR    329  

PF00023.20.ls: domain 3 of 3, from 297 to 329: score 40.7, E = 4.6e-09
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G TPLH A  +g+ ev++lLl++GA++ ++++   
     fg01250   297    EGITPLHDALNCGHFEVAELLLERGASVTLRTR    329  

PF00560.23.ls: domain 3 of 3, from 830 to 856: score 8.2, E = 7.8
                   *->nLeeLdLsgCNpsltgs.....lpssl.nl<-*
                      +LeeLdLs  N +l g++++ +l+s l+ +   
     fg01250   830    SLEELDLSM-N-PL-GDgcgqsLASLLhAC    856  

PF07723.3.ls: domain 1 of 1, from 830 to 857: score 12.7, E = 0.27
                   *->sLKtLhLdsVkf..sddeslekLLSgCP<-*
                      sL  L+L+ + +++ ++ sl +LL +CP   
     fg01250   830    SLEELDLSMNPLgdGCGQSLASLLHACP    857  

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