hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-06133655/chunk_1/iprscan-20080809-06133655.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fg01285y2 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00063.11.ls Myosin head (motor domain) 441.3 1.2e-129 1 PF00063.11.fs Myosin head (motor domain) 439.4 4.5e-129 1 PF00784.8.fs MyTH4 domain 124.9 5.2e-35 2 PF00784.8.ls MyTH4 domain 125.5 1.4e-34 2 PF07653.7.fs Variant SH3 domain 38.8 1.5e-10 1 PF07653.7.ls Variant SH3 domain 40.6 4.9e-09 1 PF00018.18.ls SH3 domain 11.3 0.0012 1 PF00612.17.ls IQ calmodulin-binding motif 14.6 0.33 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00063.11.ls 1/1 722 1382 .. 1 791 [] 441.3 1.2e-129 PF00063.11.fs 1/1 722 1382 .. 1 791 [] 439.4 4.5e-129 PF00612.17.ls 1/1 1415 1435 .. 1 21 [] 14.6 0.33 PF00784.8.fs 1/2 1590 1674 .. 1 96 [. 34.4 2.6e-09 PF00784.8.ls 1/2 1590 1702 .. 1 122 [] 33.2 4.7e-07 PF00018.18.ls 1/1 2484 2540 .. 1 59 [] 11.3 0.0012 PF07653.7.fs 1/1 2485 2540 .. 1 69 [] 38.8 1.5e-10 PF07653.7.ls 1/1 2485 2540 .. 1 69 [] 40.6 4.9e-09 PF00784.8.ls 2/2 2683 2789 .. 1 122 [] 92.4 1.3e-24 PF00784.8.fs 2/2 2683 2789 .. 1 122 [] 90.5 3e-25 Alignments of top-scoring domains: PF00063.11.ls: domain 1 of 1, from 722 to 1382: score 441.3, E = 1.2e-129 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp eDl++L ++ + svL LkkR++ + IYT+ G+vL ++NP + Lp fg01285y2 722 MEDLARLRLVCDSSVLLCLKKRFH-LGRIYTFGGPVLLVLNPHRSLP 767 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlis..... + ++e+ + Y+ ++ + PHiFAi +AY + + +++ +Il+++++ + fg01285y2 768 LFSPEVQASYHPRKALSTTPHIFAIVASAYDLAQNTGQDPCILLCsshcs 817 GESGAGKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsN G SG GKTE++Kk+mq+l s+ + g+ e q+ + fg01285y2 818 GHSGSGKTEAAKKIMQFLSSLEQDQT-------------GNRECQVEDML 854 PiLEAFGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEK PiL +FG AKT+ N N SRFG +++ + G i vG+ +++YLLE fg01285y2 855 PILSSFGHAKTILNANASRFGQVFCL-YLQQGVI----VGASVSHYLLET 899 SRVvyQtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsg SRVv+Q++ ER+FH+FY LLag++ e ++ L+L+ +p+ Y YLnq++ fg01285y2 900 SRVVFQAQAERSFHVFYELLAGLDSIE-RERLSLQ---GPETYYYLNQGQ 945 TynPcytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGN + g Da+ F+ ++kAl +G+ ee + ++ +lAAIL+LGN fg01285y2 946 ----ACRL-QGKEDAQDFEGLLKALQGLGLCPEELNAVWAVLAAILQLGN 990 ieGFkqdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsr i F + +e q v +++ +e +a LL+v +e Le a ++r fg01285y2 991 IC-FSSSE----RESQE-VAAVSSWAE-IHTAARLLRVPPECLEGAVTRR 1033 riktGgggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaL + +t v++ + ve A +aRDALAKa+YsRLF + ++ N +L fg01285y2 1034 VTETP-----YGQVSRSLPVESAVDARDALAKALYSRLFHRLLRRTNARL 1078 sakeQasdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEI + +++++ + v D yGFE fg01285y2 1079 APPG---------------------------EGGSIGTVT-VVDAYGFEA 1100 FaekNSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglD +N++EQLc+N + E+LQ f ++ + E EE rE W ++ fg01285y2 1101 L-RVNGLEQLCNNLASERLQLFSSQMLLAQEEEECRRELLSWVPVPQ-PP 1148 nqacidLIEkKkPpGIlslLDEeCrfPkatDqtFldKLlqtfsskhprlt c dL+ +P +ls+LD ++++ +atD tFl+K + ++ + hp fg01285y2 1149 RESCLDLLVD-QPHSLLSILDAQTWLSQATDHTFLQKSHYHH-GDHP--- 1193 hFAqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddli + kp r+++++ F+++HYAG+V+Y++ fl N+D L + ++ fg01285y2 1194 SY-AKP-RLPLPV-------FTVRHYAGTVTYQVHKFLNRNRDQLDPAVV 1234 sllksSsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksakl + l +S+ l+ +LF+e+e fg01285y2 1235 EMLGQSQL-QLVGSLFQEAEP----------------------------- 1254 gsgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNe ++ g++ +T++s f + l L++ L +++f+ C+ PN fg01285y2 1255 ---QSRGGRG--R-PTLASRFQQALEDLIARLGRS---HVYFIQCLTPNP 1295 kKkagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLa K +g FD V +Ql +LE + r a FP R++f Fl ++ L+ fg01285y2 1296 GKLPGLFDVGHVTEQLHQAAILE-AVGTRSANFPVRVPFEAFLASFQALG 1344 pktwpsgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR< ++ ++ +++++c ++L + + ++ +y +G TK+ + fg01285y2 1345 SEGQEDL-------SDREKCGAVLSQV--L--GAESPLYHLGATKVLLQ 1382 -* fg01285y2 - - PF00063.11.fs: domain 1 of 1, from 722 to 1382: score 439.4, E = 4.5e-129 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp eDl++L ++ + svL LkkR++ + IYT+ G+vL ++NP + Lp fg01285y2 722 MEDLARLRLVCDSSVLLCLKKRFH-LGRIYTFGGPVLLVLNPHRSLP 767 iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlis..... + ++e+ + Y+ ++ + PHiFAi +AY + + +++ +Il+++++ + fg01285y2 768 LFSPEVQASYHPRKALSTTPHIFAIVASAYDLAQNTGQDPCILLCsshcs 817 GESGAGKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsN G SG GKTE++Kk+mq+l s+ + g+ e q+ + fg01285y2 818 GHSGSGKTEAAKKIMQFLSSLEQDQT-------------GNRECQVEDML 854 PiLEAFGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEK PiL +FG AKT+ N N SRFG +++ + G i vG+ +++YLLE fg01285y2 855 PILSSFGHAKTILNANASRFGQVFCL-YLQQGVI----VGASVSHYLLET 899 SRVvyQtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsg SRVv+Q++ ER+FH+FY LLag++ e ++ L+L+ +p+ Y YLnq++ fg01285y2 900 SRVVFQAQAERSFHVFYELLAGLDSIE-RERLSLQ---GPETYYYLNQGQ 945 TynPcytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGN + g Da+ F+ ++kAl +G+ ee + ++ +lAAIL+LGN fg01285y2 946 ----ACRL-QGKEDAQDFEGLLKALQGLGLCPEELNAVWAVLAAILQLGN 990 ieGFkqdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsr i F + +e q v +++ +e +a LL+v +e Le a ++r fg01285y2 991 IC-FSSSE----RESQE-VAAVSSWAE-IHTAARLLRVPPECLEGAVTRR 1033 riktGgggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaL + +t v++ + ve A +aRDALAKa+YsRLF + ++ N +L fg01285y2 1034 VTETP-----YGQVSRSLPVESAVDARDALAKALYSRLFHRLLRRTNARL 1078 sakeQasdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEI + +++++ + v D yGFE fg01285y2 1079 APPG---------------------------EGGSIGTVT-VVDAYGFEA 1100 FaekNSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglD +N++EQLc+N + E+LQ f ++ + E EE rE W ++ fg01285y2 1101 L-RVNGLEQLCNNLASERLQLFSSQMLLAQEEEECRRELLSWVPVPQ-PP 1148 nqacidLIEkKkPpGIlslLDEeCrfPkatDqtFldKLlqtfsskhprlt c dL+ +P +ls+LD ++++ +atD tFl+K + ++ + hp fg01285y2 1149 RESCLDLLVD-QPHSLLSILDAQTWLSQATDHTFLQKSHYHH-GDHP--- 1193 hFAqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddli + kp r+++++ F+++HYAG+V+Y++ fl N+D L + ++ fg01285y2 1194 SY-AKP-RLPLPV-------FTVRHYAGTVTYQVHKFLNRNRDQLDPAVV 1234 sllksSsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksakl + l +S+ l+ +LF+e+e fg01285y2 1235 EMLGQSQL-QLVGSLFQEAEP----------------------------- 1254 gsgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNe ++ g++ +T++s f + l L++ L +++f+ C+ PN fg01285y2 1255 ---QSRGGRG--R-PTLASRFQQALEDLIARLGRS---HVYFIQCLTPNP 1295 kKkagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLa K +g FD V +Ql +LE + r a FP R++f Fl ++ L+ fg01285y2 1296 GKLPGLFDVGHVTEQLHQAAILE-AVGTRSANFPVRVPFEAFLASFQALG 1344 pktwpsgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR< ++ ++ +++++c ++L + + ++ +y +G TK+ + fg01285y2 1345 SEGQEDL-------SDREKCGAVLSQV--L--GAESPLYHLGATKVLLQ 1382 -* fg01285y2 - - PF00612.17.ls: domain 1 of 1, from 1415 to 1435: score 14.6, E = 0.33 *->rraaikIQaawRGylaRkryk<-* +r ++Qa+ RG++aRkry fg01285y2 1415 QRVLPRMQARMRGFQARKRYL 1435 PF00784.8.fs: domain 1 of 2, from 1590 to 1674: score 34.4, E = 2.6e-09 *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW +r + +++ qg p LR+E++ Q++ Ql NP+ q + rGW fg01285y2 1590 WQRQIMGAYLVRQGQCWPGLRNELFSQLVAQLWQNPD--EQQSQRGW 1634 eLlylctgtFpPSeellkyLsEqFlhrraheqssgpelegyaadcqerL< L+ +++ FpP l k+L F ++ a+ g aa cq +L fg01285y2 1635 ALMAVLLSAFPPLPVLQKPLL-KFVSDQAP--------RGMAALCQHKL 1674 -* fg01285y2 - - PF00784.8.ls: domain 1 of 2, from 1590 to 1702: score 33.2, E = 4.7e-07 *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW +r + +++ qg p LR+E++ Q++ Ql NP+ q + rGW fg01285y2 1590 WQRQIMGAYLVRQGQCWPGLRNELFSQLVAQLWQNPD--EQQSQRGW 1634 eLlylctgtFpPSeellkyLsEqFlhrraheqssgpelegyaadcqe... L+ +++ FpP l k+L F ++ a+ g aa cq + fg01285y2 1635 ALMAVLLSAFPPLPVLQKPLL-KFVSDQAP--------RGMAALCQHkll 1675 .rLkiYktqknGYqsRkypPsrlEieAik<-* ++L+ ++q ++ +R pP lE +A fg01285y2 1676 gALE--QSQLASGATRAHPPTQLEWLAGW 1702 PF00018.18.ls: domain 1 of 1, from 2484 to 2540: score 11.3, E = 0.0012 *->kkvvALYDYearesdELsFkkGDvitvleksdd.pgWWkgrlkgtgG +v+AL Y + + LsF +GD i++l +pgW +g G fg01285y2 2484 GYVIALRSYITDNCSLLSFHRGDLIKLLPVATLePGWQFGSAG---G 2527 keGliPsNYVepv<-* + Gl+P+ V+p fg01285y2 2528 RSGLFPADIVQPA 2540 PF07653.7.fs: domain 1 of 1, from 2485 to 2540: score 38.8, E = 1.5e-10 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.gww y++a+++y+ +++ Ls+++Gd++k++ + ++gw fg01285y2 2485 YVIALRSYIT-DNCSL------LSFHRGDLIKLL---PVATLEpGWQ 2521 egeslggGrrrRGlvPssaveel<-* +g+ gGr Gl+P+++v++ fg01285y2 2522 FGSA--GGRS--GLFPADIVQPA 2540 PF07653.7.ls: domain 1 of 1, from 2485 to 2540: score 40.6, E = 4.9e-09 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.gww y++a+++y+ +++ Ls+++Gd++k++ + ++gw fg01285y2 2485 YVIALRSYIT-DNCSL------LSFHRGDLIKLL---PVATLEpGWQ 2521 egeslggGrrrRGlvPssaveel<-* +g+ gGr Gl+P+++v++ fg01285y2 2522 FGSA--GGRS--GLFPADIVQPA 2540 PF00784.8.ls: domain 2 of 2, from 2683 to 2789: score 92.4, E = 1.3e-24 *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW ++ dl+ +lk++ ++ LRDEiYCQ iKQ t P ++ +rGW fg01285y2 2683 KDEMDLLYELLKLC-QQEKLRDEIYCQVIKQVTGHPR--PEHCTRGW 2726 eLlylctgtFpPSeellkyLsEqFlhrraheqssgpelegyaadcqerLk l+l+tg FpPS +l +yL Fl++ ++s + +a+ qe L+ fg01285y2 2727 SFLSLLTGFFPPSTRLMPYLT-KFLQDS--GPS-----QELARSSQEHLQ 2768 iYktqknGYqsRkypPsrlEieAik<-* +t k+G +R P E A++ fg01285y2 2769 --RTVKYG--GRRRMPPPGEMKAFL 2789 PF00784.8.fs: domain 2 of 2, from 2683 to 2789: score 90.5, E = 3e-25 *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW ++ dl+ +lk++ ++ LRDEiYCQ iKQ t P ++ +rGW fg01285y2 2683 KDEMDLLYELLKLC-QQEKLRDEIYCQVIKQVTGHPR--PEHCTRGW 2726 eLlylctgtFpPSeellkyLsEqFlhrraheqssgpelegyaadcqerLk l+l+tg FpPS +l +yL Fl++ ++s + +a+ qe L+ fg01285y2 2727 SFLSLLTGFFPPSTRLMPYLT-KFLQDS--GPS-----QELARSSQEHLQ 2768 iYktqknGYqsRkypPsrlEieAik<-* +t k+G +R P E A++ fg01285y2 2769 --RTVKYG--GRRRMPPPGEMKAFL 2789 //