hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-06133655/chunk_1/iprscan-20080809-06133655.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fg01285y2 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00242 568.7 2.2e-166 1 SM00139 134.2 1.4e-35 2 SM00295 58.6 7.8e-13 1 SM00326 42.3 6.3e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00242 1/1 714 1395 .. 1 771 [] 568.7 2.2e-166 SM00139 1/2 1551 1702 .. 1 166 [] 22.0 1.5e-06 SM00326 1/1 2484 2541 .. 1 58 [] 42.3 6.3e-08 SM00139 2/2 2643 2789 .. 1 166 [] 112.2 6e-29 SM00295 1/1 2791 2993 .. 1 232 [] 58.6 7.8e-13 Alignments of top-scoring domains: SM00242: domain 1 of 1, from 714 to 1395: score 568.7, E = 2.2e-166 *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav + +e+ eD+++L + + +vl LkkR++ + IYT+ G+vL ++ fg01285y2 714 SLGDGLEDMEDLARLRLVCDSSVLLCLKKRFHLGRIYTFGGPVLLVL 760 NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre NP++ l p++++ev + Y+ ++ PH+FAi +AY + fg01285y2 761 NPHRSL-PLFSPEVQASYH------PRKALSTTPHIFAIVASAYDLAQNT 803 keNQsIi.....ISGESGAGKTEatKkimqYLAavsg.....svesvedq +++ +I+ ++++SG SG+GKTEa+Kkimq+L+++ ++++++ +ved+ fg01285y2 804 GQDPCILlcsshCSGHSGSGKTEAAKKIMQFLSSLEQdqtgnRECQVEDM 853 iLesNPiLEAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLE + PiL +FG AKT+ N N SRFG +++ + + G ivGA++++YLLE fg01285y2 854 L----PILSSFGHAKTILNANASRFGQVFCL-YLQQGVIVGASVSHYLLE 898 KSRVVsQakgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqg SRVV+Qa+ ER++H+FY+LLaG++ ++++l L+ +pe Y+YLnqg fg01285y2 899 TSRVVFQAQAERSFHVFYELLAGLDSIERERLSLQ----GPETYYYLNQG 944 gtpfankryssgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIF +++ g Da++F+ +lkA++ lG+ eE ++++ fg01285y2 945 Q-----------ACRLQGKEDAQDFEG----LLKALQGLGLCPEELNAVW 979 rilAAILHLGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpee +lAAIL LGNi F+++++ ++++v+ v+++ e+ +aA+LL+v+pe fg01285y2 980 AVLAAILQLGNICFSSSER--ESQEVAA--VSSWAEIHTAARLLRVPPEC 1025 LekaLtkRkiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVk Le a t+R+++t + +++ l ve Av+aRDALAKa+YsRLF L + fg01285y2 1026 LEGAVTRRVTETPYG---QVSRSLPVESAVDARDALAKALYSRLFHRLLR 1072 rINksl.......sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfF r N l ++++++s ++ V D yGFE +N++EQ+C N a E+LQ f fg01285y2 1073 RTNARLappgeggSIGTVTVVDAYGFEALRVNGLEQLCNNLASERLQLFS 1122 nqhvFKlEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslL q + +E EE rE ++W ++ c+DL+ + P +ls+L fg01285y2 1123 SQMLLAQEEEECRRELLSWVPVPQP--PRESCLDLLVDQ---PHSLLSIL 1167 DEeClfHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkSlkkgkpkk D ++++ ++TD+tFl+K h hh++hp + kp fg01285y2 1168 DAQTWL---SQATDHTFLQKS-----HYHHGDHPSYAKP----------- 1198 rfgrtaFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasL r + + F+++HYAG+VtY+v+ FL +N+D+L + ++e l +S+ l+ sL fg01285y2 1199 RLPLPVFTVRHYAGTVTYQVHKFLNRNRDQLDPAVVEMLGQSQLQLVGSL 1248 FpeeadqsssaakekssggagksrkagrrepskgtisskkrppTvGsqFk F+e ++qs ++ pT++s+F+ fg01285y2 1249 FQEAEPQSRG----------------------------GRGRPTLASRFQ 1270 .sLneLmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEni + L++L++ L ++++FI C PN K+pg Fd V QL+ +LE++ fg01285y2 1271 qALEDLIARLGRSHVYFIQCLTPNPGKLPGLFDVGHVTEQLHQAAILEAV 1320 RIRraGFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkaceal R a FP+R pf+ Fl ++ L + + ++++ c a+ fg01285y2 1321 GTRSANFPVRVPFEAFLASFQALGSEGQEDL----------SDREKCGAV 1360 LqslglgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-* L ++ + ++ y +G TKv l + +++LEelR++ fg01285y2 1361 LSQVLG------AESPLYHLGATKVLLQ-EQGWQRLEELRDQ 1395 SM00139: domain 1 of 2, from 1551 to 1702: score 22.0, E = 1.5e-06 *->fskkPiktsLLkleddkeedskeAvkiFkaILkfMGDlPlpkssssk + P+ ++L++l++d ++A++i k L+ GD l+ fg01285y2 1551 RPGQPLAKPLTQLDGD---NPQRALDINKVMLRLLGDGSLES----- 1589 lytLGeaqeFnmlepspdshlelvqfIlqkglarpeLRDEiYCQliKQlt +++ + +++ +g p LR+E++ Ql+ Ql+ fg01285y2 1590 -----------------WQRQIMGAYLVRQGQCWPGLRNELFSQLVAQLW 1622 ........kRGWeLLylctglFpPSeSrllkyLlqFLkrradqptetpql ++++++++ RGW L++ +++ FpP l+k Ll+F ++ a+ ++ fg01285y2 1623 qnpdeqqsQRGWALMAVLLSAFPPLP-VLQKPLLKFVSDQAPR-----GM 1666 maqgla.........kycleGaRkqpPsrlEleAik<-* +a+++++ + ++++ + +R pP++lE+ A fg01285y2 1667 AALCQHkllgaleqsQLASGATRAHPPTQLEWLAGW 1702 SM00326: domain 1 of 1, from 2484 to 2541: score 42.3, E = 6.3e-08 *->eyvvAlYDyeaqnedELsFkkGDiitvleks..ddgWweGelnrtGk +yv+Al +y +n LsF++GD i +l + ++gW G + G+ fg01285y2 2484 GYVIALRSYITDNCSLLSFHRGDLIKLLPVAtlEPGWQFGSAG--GR 2528 eGlfPsnYVeeie<-* GlfP+ V++ fg01285y2 2529 SGLFPADIVQPAA 2541 SM00139: domain 2 of 2, from 2643 to 2789: score 112.2, E = 6e-29 *->fskkPiktsLLkleddkeedskeAvkiFkaILkfMGDlPlpkssssk ++k Pi++sLL l+dd sk Av+ F+a ++fMGD p+ fg01285y2 2643 YTKAPIQESLLSLSDD---VSKLAVASFLALMRFMGDQSKPR----- 2681 lytLGeaqeFnmlepspdshlelvqfIlqkglarpeLRDEiYCQliKQlt ++++ +l+ +l+++ +++ LRDEiYCQ+iKQ+t fg01285y2 2682 ----------------GKDEMDLLYELLKLC-QQEKLRDEIYCQVIKQVT 2714 ........kRGWeLLylctglFpPSeSrllkyLlqFLkrradqptetpql +++++++ RGW L+l+tg FpPS rl++yL +FL++ ++ + + fg01285y2 2715 ghprpehcTRGWSFLSLLTGFFPPST-RLMPYLTKFLQDSGPSQELARSS 2763 maqglakycleGaRkqpPsrlEleAik<-* + + + ++ + G R +pP E +A++ fg01285y2 2764 QEHLQRTVKYGGRRRMPP-PGEMKAFL 2789 SM00295: domain 1 of 1, from 2791 to 2993: score 58.6, E = 7.8e-13 *->spkprvlkVylldgttlefevdssttaeelletvcrklgl.sprese r l ++l+ g + ++ t a e+ e++cr++g++ p+e + fg01285y2 2791 GQAIRLLLIHLPGGVDYRTNIQTFTVAAEVQEELCRQMGItEPQEVQ 2837 yFgLqfedkded.....shWldpaktilkqdvkspksepltlyFRvkFyp +F+L+++ ++++ ++ + + ++ + +qdv+ l+ R+ + fg01285y2 2838 EFALFLIKEKSQlvrplQPAEYLNSVVVDQDVS--------LHSRRLHWE 2879 pdwhgppeqlkeDptryn.llylQvrddilsGrlpcp..seeeallLAaL + l D+ +y++ +y Qv +d+l+G lp++ + + +++LAaL fg01285y2 2880 TP-------LHFDNSTYIsTHYSQVLWDYLQGKLPVSakADAQLARLAAL 2922 alqaefGdydpeeeekkkslkhvakelslkrflPkqlldsikasflqiql + + + p+ +l ++Pkql ++++ fg01285y2 2923 QHLSKANRNTPS-------------GQDLLAYVPKQLQRQVN-------- 2951 tlkewrerIvelhkehaglspeeaklkYLelarrLpptYGvelF<-* + +++ ++ +++ g sp ea++ ++e + Lp ++G +++ fg01285y2 2952 -TASIKNLMGQELRRLEGHSPQEAQISFIEAMSQLP-LFGYTVY 2993 //