hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-06281146/chunk_1/iprscan-20080809-06281146.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fg01431
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00319.9.fs SRF-type transcription factor (DNA-binding a    99.3    2.5e-27   1
PF00319.9.ls SRF-type transcription factor (DNA-binding a   101.3    2.7e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00319.9.fs   1/1     159   209 ..     1    51 []    99.3  2.5e-27
PF00319.9.ls   1/1     159   209 ..     1    51 []   101.3  2.7e-27

Alignments of top-scoring domains:
PF00319.9.fs: domain 1 of 1, from 159 to 209: score 99.3, E = 2.5e-27
                   *->krIenksnrqVTfsKRrnGllKKAhELSVLCdaeVaviifsstGkly
                      ++I+nk++r++TfsKR++G++KKA+ELS+L++++V+++++s+tG++y
     fg01431   159    EFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVY 205  

                   eyss<-*
                   ++++   
     fg01431   206 TFAT    209  

PF00319.9.ls: domain 1 of 1, from 159 to 209: score 101.3, E = 2.7e-27
                   *->krIenksnrqVTfsKRrnGllKKAhELSVLCdaeVaviifsstGkly
                      ++I+nk++r++TfsKR++G++KKA+ELS+L++++V+++++s+tG++y
     fg01431   159    EFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVY 205  

                   eyss<-*
                   ++++   
     fg01431   206 TFAT    209  

//