hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-06342311/chunk_1/iprscan-20080809-06342311.nocrc
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Query sequence: fg01928
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08235.3.fs LNS2 (Lipin/Ned1/Smp2)                         259.6    5.8e-77   1
PF08235.3.ls LNS2 (Lipin/Ned1/Smp2)                         261.4    1.8e-75   1
PF02862.8.ls DDHD domain                                    236.7    4.7e-68   1
PF02862.8.fs DDHD domain                                    235.0    1.5e-67   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02862.8.ls   1/1     315   519 ..     1   276 []   236.7  4.7e-68
PF02862.8.fs   1/2     315   415 ..     1   112 [.   133.2  1.3e-37
PF02862.8.fs   2/2     467   519 ..   224   276 .]   101.8    1e-28
PF08235.3.ls   1/1     664   795 ..     1   158 []   261.4  1.8e-75
PF08235.3.fs   1/1     664   795 ..     1   158 []   259.6  5.8e-77

Alignments of top-scoring domains:
PF02862.8.ls: domain 1 of 1, from 315 to 519: score 236.7, E = 4.7e-68
                   *->LdFkvenfFaiGSPlGlfltlRglkiGDRPEFPngdslDllvsrpaC
                      +dF v++fF++GSPlGl+l++R++         + + lD ++ rpaC
     fg01928   315    FDFDVSDFFLFGSPLGLVLAMRRT---------VLPGLDGFQVRPAC 352  

                   kqfYNIFHPlDPvAYRLEPLvvpefsKhikPvkIphykgrkrLglelsep
                    q+Y  FH +DP A+RLEPL++p+f+  ++Pv++p+y++++ Lg+++s++
     fg01928   353 SQVYSFFHCADPSASRLEPLLEPKFH-LVPPVSVPRYQRFP-LGDGQSLL 400  

                   ltrviadlpqnflsn.......lqssiksspvltsasgasrkneeeteev
                   l++ +++++ +fl+++++++++l  + +s p +++  +++r+ +e +  +
     fg01928   401 LADALHTHSPLFLEGssrdsppLLDAPASPPQASRFQRPGRRMSEGSSHS 450  

                   kestarsGCSPRmTpapeqtenltemliareeravesqpssfgrsSiekt
                   ++s                 e+ ++m+   ++r  ++             
     fg01928   451 ESS-----------------ESSDSMAPVGASRITAK------------- 470  

                   kStaslgsvnktvaenietapeaskeedlaikvlmskLngtkRIDYvLqe
                                                        ++g+kRIDY+L++
     fg01928   471 -------------------------------------WWGSKRIDYALYC 483  

                   PaallafnsYlsalksHasYWeSeDvAlFlLkeiyr<-*
                   P+ l+af+++++++++HasYWeS+Dv++F+L++++r   
     fg01928   484 PDVLTAFPTVALPHLFHASYWESTDVVAFILRQVMR    519  

PF02862.8.fs: domain 1 of 2, from 315 to 415: score 133.2, E = 1.3e-37
                   *->LdFkvenfFaiGSPlGlfltlRglkiGDRPEFPngdslDllvsrpaC
                      +dF v++fF++GSPlGl+l++R++         + + lD ++ rpaC
     fg01928   315    FDFDVSDFFLFGSPLGLVLAMRRT---------VLPGLDGFQVRPAC 352  

                   kqfYNIFHPlDPvAYRLEPLvvpefsKhikPvkIphykgrkrLglelsep
                    q+Y  FH +DP A+RLEPL++p+f+  ++Pv++p+y++++ Lg+++s++
     fg01928   353 SQVYSFFHCADPSASRLEPLLEPKFH-LVPPVSVPRYQRFP-LGDGQSLL 400  

                   ltrviadlpqnflsn<-*
                   l++ +++++ +fl++   
     fg01928   401 LADALHTHSPLFLEG    415  

PF02862.8.fs: domain 2 of 2, from 467 to 519: score 101.8, E = 1e-28
                   *->lmskLngtkRIDYvLqePaallafnsYlsalksHasYWeSeDvAlFl
                      + +k++g+kRIDY+L++P+ l+af+++++++++HasYWeS+Dv++F+
     fg01928   467    ITAKWWGSKRIDYALYCPDVLTAFPTVALPHLFHASYWESTDVVAFI 513  

                   Lkeiyr<-*
                   L++++r   
     fg01928   514 LRQVMR    519  

PF08235.3.ls: domain 1 of 1, from 664 to 795: score 261.4, E = 1.8e-75
                   *->VViSDIDGTITkSDvLGHilsiiGkDPWthaGvadLfrkiqenGYkI
                      VV+S IDG++++S      +si+G+DP++++G++d++r++q++GY+I
     fg01928   664    VVFS-IDGSFAAS------VSIMGSDPKVRPGAVDVVRHWQDLGYMI 703  

                   iYLTARpigQadsTrsYLsqvkqdGkkLPdGpviLSPdrlfaALkREvIe
                   +Y+T+Rp++Q+++++s+Lsq+     ++P+G++++S          ++++
     fg01928   704 LYITGRPDMQKQRVVSWLSQH-----NFPQGMIFFS----------DGLV 738  

                   kkPekFKiacLrdIrqlFppnrnpFyAGFGNritDvisYraVgvppsrIF
                   ++P+++K+++Lr+++q+   + +++ A++G++ +D+++Y+ +g+p+s+IF
     fg01928   739 HDPLRQKAIFLRNLMQE---CFIKISAAYGST-KDISVYSVLGLPASQIF 784  

                   iinpkgevhqe<-*
                   i+++ ++++q+   
     fg01928   785 IVGRPTKKYQT    795  

PF08235.3.fs: domain 1 of 1, from 664 to 795: score 259.6, E = 5.8e-77
                   *->VViSDIDGTITkSDvLGHilsiiGkDPWthaGvadLfrkiqenGYkI
                      VV+S IDG++++S      +si+G+DP++++G++d++r++q++GY+I
     fg01928   664    VVFS-IDGSFAAS------VSIMGSDPKVRPGAVDVVRHWQDLGYMI 703  

                   iYLTARpigQadsTrsYLsqvkqdGkkLPdGpviLSPdrlfaALkREvIe
                   +Y+T+Rp++Q+++++s+Lsq+     ++P+G++++S          ++++
     fg01928   704 LYITGRPDMQKQRVVSWLSQH-----NFPQGMIFFS----------DGLV 738  

                   kkPekFKiacLrdIrqlFppnrnpFyAGFGNritDvisYraVgvppsrIF
                   ++P+++K+++Lr+++q+   + +++ A++G++ +D+++Y+ +g+p+s+IF
     fg01928   739 HDPLRQKAIFLRNLMQE---CFIKISAAYGST-KDISVYSVLGLPASQIF 784  

                   iinpkgevhqe<-*
                   i+++ ++++q+   
     fg01928   785 IVGRPTKKYQT    795  

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