hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-06464810/chunk_1/iprscan-20080809-06464810.nocrc
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Query sequence: fg02027
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00620.17.fs RhoGAP domain                                  237.3      1e-69   1
PF00620.17.ls RhoGAP domain                                  239.2    8.3e-69   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00620.17.fs   1/1     482   641 ..     1   155 []   237.3    1e-69
PF00620.17.ls   1/1     482   641 ..     1   155 []   239.2  8.3e-69

Alignments of top-scoring domains:
PF00620.17.fs: domain 1 of 1, from 482 to 641: score 237.3, E = 1e-69
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P++v++C+++lek+GL+t+GI+Rv  sk+r+++Lre+fdrg dv   
     fg02027   482    PRLVDSCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVS-- 526  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea
                   ++ee++vh+vA lLK+FLR++P+PLlt+ely +fi     + ++ee+l  
     fg02027   527 LEEEHSVHDVAALLKEFLRDMPDPLLTRELYTAFI--NTLLLEPEEQLGT 574  

                   lrellrkLPpaNrdtLryLlahLnrVaqnsev...........NkMtahN
                   l++l+++LPp+N+dtL +Ll +L+ Va++++++ ++++++ ++NkMt+ N
     fg02027   575 LQLLIYLLPPCNCDTLHRLLQFLSIVARHADDniskdgqevtgNKMTSLN 624  

                   LAivFgPtLlrppdgdsad<-*
                   LA++FgP+Ll+ ++  s+d   
     fg02027   625 LATIFGPNLLHKQK--SSD    641  

PF00620.17.ls: domain 1 of 1, from 482 to 641: score 239.2, E = 8.3e-69
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdln
                      P++v++C+++lek+GL+t+GI+Rv  sk+r+++Lre+fdrg dv   
     fg02027   482    PRLVDSCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVS-- 526  

                   dleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerlea
                   ++ee++vh+vA lLK+FLR++P+PLlt+ely +fi     + ++ee+l  
     fg02027   527 LEEEHSVHDVAALLKEFLRDMPDPLLTRELYTAFI--NTLLLEPEEQLGT 574  

                   lrellrkLPpaNrdtLryLlahLnrVaqnsev...........NkMtahN
                   l++l+++LPp+N+dtL +Ll +L+ Va++++++ ++++++ ++NkMt+ N
     fg02027   575 LQLLIYLLPPCNCDTLHRLLQFLSIVARHADDniskdgqevtgNKMTSLN 624  

                   LAivFgPtLlrppdgdsad<-*
                   LA++FgP+Ll+ ++  s+d   
     fg02027   625 LATIFGPNLLHKQK--SSD    641  

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