# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofg02508.fasta.nr -Q fg02508.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fg02508, 169 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6824558 sequences Expectation_n fit: rho(ln(x))= 4.6312+/-0.000182; mu= 8.8555+/- 0.010 mean_var=65.7467+/-12.763, 0's: 30 Z-trim: 31 B-trim: 0 in 0/69 Lambda= 0.158175 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62087846|dbj|BAD92370.1| ataxia telangiectasia ( 169) 1134 267.0 8.4e-70 gi|119587516|gb|EAW67112.1| ataxia telangiectasia ( 536) 1114 262.9 4.6e-68 gi|119587513|gb|EAW67109.1| ataxia telangiectasia (1641) 1114 263.3 1.1e-67 gi|119587518|gb|EAW67114.1| ataxia telangiectasia (2515) 1114 263.4 1.4e-67 gi|28144171|gb|AAO26044.1| ataxia telangiectasia m (2756) 1114 263.5 1.5e-67 gi|119587519|gb|EAW67115.1| ataxia telangiectasia (3056) 1114 263.5 1.7e-67 gi|2304971|gb|AAB65827.1| ATM [Homo sapiens] g (3056) 1114 263.5 1.7e-67 gi|1497931|gb|AAB38309.1| ataxia-telangiectasia (3056) 1114 263.5 1.7e-67 gi|13878337|sp|Q13315|ATM_HUMAN Serine-protein kin (3056) 1114 263.5 1.7e-67 gi|1585222|prf||2124355A ATM gene (3056) 1114 263.5 1.7e-67 gi|114640211|ref|XP_508740.2| PREDICTED: ataxia te (2763) 1108 262.1 4e-67 gi|114640213|ref|XP_001138999.1| PREDICTED: ataxia (2776) 1108 262.1 4e-67 gi|114640201|ref|XP_001139487.1| PREDICTED: ataxia (3056) 1108 262.2 4.3e-67 gi|1154664|emb|CAA62603.1| A-T [Homo sapiens] (1369) 1095 258.9 1.9e-66 gi|73954821|ref|XP_536585.2| PREDICTED: similar to (2790) 1065 252.3 3.6e-64 gi|73954827|ref|XP_850964.1| PREDICTED: similar to (3056) 1065 252.3 3.8e-64 gi|193083655|gb|ACF10258.1| ataxia telangiectasia (3056) 1065 252.3 3.8e-64 gi|73954825|ref|XP_862768.1| PREDICTED: similar to (3058) 1065 252.3 3.8e-64 gi|73954823|ref|XP_862746.1| PREDICTED: similar to (3075) 1065 252.3 3.9e-64 gi|149041675|gb|EDL95516.1| ataxia telangiectasia (3064) 1032 244.8 7.1e-62 gi|74143302|dbj|BAE24165.1| unnamed protein produc ( 313) 1021 241.4 7.6e-62 gi|148693849|gb|EDL25796.1| ataxia telangiectasia (3063) 1021 242.3 4.1e-61 gi|163838660|ref|NP_031525.2| ataxia telangiectasi (3066) 1021 242.3 4.1e-61 gi|13878338|sp|Q62388|ATM_MOUSE Serine-protein kin (3066) 1021 242.3 4.1e-61 gi|119906990|ref|XP_605200.3| PREDICTED: similar t (3054) 1011 240.0 2e-60 gi|151936699|gb|ABG36769.1| ataxia-telangiectasia ( 245) 996 235.6 3.3e-60 gi|194212654|ref|XP_001501211.2| PREDICTED: ataxia (3057) 1000 237.5 1.1e-59 gi|152031564|sp|Q6PQD5|ATM_PIG Serine-protein kina (3057) 996 236.6 2.1e-59 gi|118085051|ref|XP_417160.2| PREDICTED: similar t (3050) 817 195.7 4.2e-47 gi|52354661|gb|AAH82918.1| Unknown (protein for IM ( 585) 766 183.5 4e-44 gi|51599115|gb|AAT72929.1| ataxia telangiectasia m (3061) 766 184.1 1.3e-43 gi|189538372|ref|XP_001334561.2| PREDICTED: simila ( 323) 734 175.9 4.1e-42 gi|38181623|gb|AAH61584.1| ATM protein [Homo sapie ( 112) 727 173.9 5.6e-42 gi|47210533|emb|CAF90652.1| unnamed protein produc ( 531) 608 147.4 2.6e-33 gi|109657745|gb|ABG36772.1| ataxia-telangiectasia ( 152) 452 111.3 5.5e-23 gi|109657747|gb|ABG36773.1| ataxia-telangiectasia ( 152) 452 111.3 5.5e-23 gi|164523709|gb|ABY60856.1| ataxia telangiectasia (3120) 340 86.9 2.5e-14 gi|169218268|ref|XP_945884.2| PREDICTED: similar t (2934) 304 78.7 7.1e-12 gi|2088523|gb|AAC51298.1| ATM protein [Homo sapien ( 24) 162 44.4 0.0012 >>gi|62087846|dbj|BAD92370.1| ataxia telangiectasia muta (169 aa) initn: 1134 init1: 1134 opt: 1134 Z-score: 1408.3 bits: 267.0 E(): 8.4e-70 Smith-Waterman score: 1134; 100.000% identity (100.000% similar) in 169 aa overlap (1-169:1-169) 10 20 30 40 50 60 fg0250 TMSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 TMSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA 10 20 30 40 50 60 70 80 90 100 110 120 fg0250 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE 70 80 90 100 110 120 130 140 150 160 fg0250 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLGMF ::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLGMF 130 140 150 160 >>gi|119587516|gb|EAW67112.1| ataxia telangiectasia muta (536 aa) initn: 1114 init1: 1114 opt: 1114 Z-score: 1377.1 bits: 262.9 E(): 4.6e-68 Smith-Waterman score: 1114; 98.810% identity (99.405% similar) in 168 aa overlap (2-169:1-168) 10 20 30 40 50 60 fg0250 TMSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA 10 20 30 40 50 70 80 90 100 110 120 fg0250 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE 60 70 80 90 100 110 130 140 150 160 fg0250 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLGMF :::::::::::::::::::::::::::::::::::::::::::::: .: gi|119 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLELFSVYFRLYLKPS 120 130 140 150 160 170 gi|119 QDVHRVLVARIIHAVTKGCCSQTDGLNSKFLDFFSKAIQCARQEKSSSGLNHILAALTIF 180 190 200 210 220 230 >>gi|119587513|gb|EAW67109.1| ataxia telangiectasia muta (1641 aa) initn: 1114 init1: 1114 opt: 1114 Z-score: 1370.7 bits: 263.3 E(): 1.1e-67 Smith-Waterman score: 1114; 98.810% identity (99.405% similar) in 168 aa overlap (2-169:1-168) 10 20 30 40 50 60 fg0250 TMSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA 10 20 30 40 50 70 80 90 100 110 120 fg0250 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE 60 70 80 90 100 110 130 140 150 160 fg0250 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLGMF :::::::::::::::::::::::::::::::::::::::::::::: .: gi|119 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLELFSVYFRLYLKPS 120 130 140 150 160 170 gi|119 QDVHRVLVARIIHAVTKGCCSQTDGLNSKFLDFFSKAIQCARQEKSSSGLNHILAALTIF 180 190 200 210 220 230 >>gi|119587518|gb|EAW67114.1| ataxia telangiectasia muta (2515 aa) initn: 1114 init1: 1114 opt: 1114 Z-score: 1368.2 bits: 263.4 E(): 1.4e-67 Smith-Waterman score: 1114; 98.810% identity (99.405% similar) in 168 aa overlap (2-169:1-168) 10 20 30 40 50 60 fg0250 TMSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA 10 20 30 40 50 70 80 90 100 110 120 fg0250 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE 60 70 80 90 100 110 130 140 150 160 fg0250 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLGMF :::::::::::::::::::::::::::::::::::::::::::::: .: gi|119 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLELFSVYFRLYLKPS 120 130 140 150 160 170 gi|119 QDVHRVLVARIIHAVTKGCCSQTDGLNSKFLDFFSKAIQCARQEKSSSGLNHILAALTIF 180 190 200 210 220 230 >>gi|28144171|gb|AAO26044.1| ataxia telangiectasia mutat (2756 aa) initn: 1114 init1: 1114 opt: 1114 Z-score: 1367.7 bits: 263.5 E(): 1.5e-67 Smith-Waterman score: 1114; 98.810% identity (99.405% similar) in 168 aa overlap (2-169:1-168) 10 20 30 40 50 60 fg0250 TMSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|281 MSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA 10 20 30 40 50 70 80 90 100 110 120 fg0250 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|281 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE 60 70 80 90 100 110 130 140 150 160 fg0250 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLGMF :::::::::::::::::::::::::::::::::::::::::::::: .: gi|281 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLELFSVYFRLYLKPS 120 130 140 150 160 170 gi|281 QDVHRVLVARIIHAVTKGCCSQTDGLNSKFLDFFSKAIQCARQEKSSSGLNHILAALTIF 180 190 200 210 220 230 >>gi|119587519|gb|EAW67115.1| ataxia telangiectasia muta (3056 aa) initn: 1114 init1: 1114 opt: 1114 Z-score: 1367.1 bits: 263.5 E(): 1.7e-67 Smith-Waterman score: 1114; 98.810% identity (99.405% similar) in 168 aa overlap (2-169:1-168) 10 20 30 40 50 60 fg0250 TMSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA 10 20 30 40 50 70 80 90 100 110 120 fg0250 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE 60 70 80 90 100 110 130 140 150 160 fg0250 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLGMF :::::::::::::::::::::::::::::::::::::::::::::: .: gi|119 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLELFSVYFRLYLKPS 120 130 140 150 160 170 gi|119 QDVHRVLVARIIHAVTKGCCSQTDGLNSKFLDFFSKAIQCARQEKSSSGLNHILAALTIF 180 190 200 210 220 230 >>gi|2304971|gb|AAB65827.1| ATM [Homo sapiens] gi|11 (3056 aa) initn: 1114 init1: 1114 opt: 1114 Z-score: 1367.1 bits: 263.5 E(): 1.7e-67 Smith-Waterman score: 1114; 98.810% identity (99.405% similar) in 168 aa overlap (2-169:1-168) 10 20 30 40 50 60 fg0250 TMSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|230 MSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA 10 20 30 40 50 70 80 90 100 110 120 fg0250 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|230 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE 60 70 80 90 100 110 130 140 150 160 fg0250 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLGMF :::::::::::::::::::::::::::::::::::::::::::::: .: gi|230 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLELFSVYFRLYLKPS 120 130 140 150 160 170 gi|230 QDVHRVLVARIIHAVTKGCCSQTDGLNSKFLDFFSKAIQCARQEKSSSGLNHILAALTIF 180 190 200 210 220 230 >>gi|1497931|gb|AAB38309.1| ataxia-telangiectasia (3056 aa) initn: 1114 init1: 1114 opt: 1114 Z-score: 1367.1 bits: 263.5 E(): 1.7e-67 Smith-Waterman score: 1114; 98.810% identity (99.405% similar) in 168 aa overlap (2-169:1-168) 10 20 30 40 50 60 fg0250 TMSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 MSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA 10 20 30 40 50 70 80 90 100 110 120 fg0250 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE 60 70 80 90 100 110 130 140 150 160 fg0250 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLGMF :::::::::::::::::::::::::::::::::::::::::::::: .: gi|149 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLELFSVYFRLYLKPS 120 130 140 150 160 170 gi|149 QDVHRVLVARIIHAVTKGCCSQTDGLNSKFLDFFSKAIQCARQEKSSSGLNHILAALTIF 180 190 200 210 220 230 >>gi|13878337|sp|Q13315|ATM_HUMAN Serine-protein kinase (3056 aa) initn: 1114 init1: 1114 opt: 1114 Z-score: 1367.1 bits: 263.5 E(): 1.7e-67 Smith-Waterman score: 1114; 98.810% identity (99.405% similar) in 168 aa overlap (2-169:1-168) 10 20 30 40 50 60 fg0250 TMSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|138 MSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA 10 20 30 40 50 70 80 90 100 110 120 fg0250 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|138 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE 60 70 80 90 100 110 130 140 150 160 fg0250 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLGMF :::::::::::::::::::::::::::::::::::::::::::::: .: gi|138 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLELFSVYFRLYLKPS 120 130 140 150 160 170 gi|138 QDVHRVLVARIIHAVTKGCCSQTDGLNSKFLDFFSKAIQCARQEKSSSGLNHILAALTIF 180 190 200 210 220 230 >>gi|1585222|prf||2124355A ATM gene (3056 aa) initn: 1114 init1: 1114 opt: 1114 Z-score: 1367.1 bits: 263.5 E(): 1.7e-67 Smith-Waterman score: 1114; 98.810% identity (99.405% similar) in 168 aa overlap (2-169:1-168) 10 20 30 40 50 60 fg0250 TMSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 MSLVLNDLLICCRQLEHDRATERKKEVEKFKRLIRDPETIKHLDRHSDSKQGKYLNWDA 10 20 30 40 50 70 80 90 100 110 120 fg0250 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 VFRFLQKYIQKETECLRIAKPNVSASTQASRQKKMQEISSLVKYFIKCANRRAPRLKCQE 60 70 80 90 100 110 130 140 150 160 fg0250 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLGMF :::::::::::::::::::::::::::::::::::::::::::::: .: gi|158 LLNYIMDTVKDSSNGAIYGADCSNILLKDILSVRKYWCEISQQQWLELFSVYFRLYLKPS 120 130 140 150 160 170 gi|158 QDVHRVLVARIIHAVTKGCCSQTDGLNSKFLDFFSKAIQCARQEKSSSGLNHILAALTIF 180 190 200 210 220 230 169 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sat Aug 9 06:57:25 2008 done: Sat Aug 9 07:00:23 2008 Total Scan time: 584.500 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]