hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-07133456/chunk_1/iprscan-20080809-07133456.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fg02848 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00193.8.fs Extracellular link domain 369.3 5.9e-166 2 PF00193.8.ls Extracellular link domain 373.1 3.9e-109 2 PF00059.11.fs Lectin C-type domain 152.1 1.4e-42 3 PF00059.11.ls Lectin C-type domain 144.1 3.4e-40 1 PF00008.17.ls EGF-like domain 63.7 5.6e-16 2 PF00008.17.fs EGF-like domain 60.0 6.1e-16 2 PF00084.11.ls Sushi domain (SCR repeat) 57.4 4.4e-14 1 PF00084.11.fs Sushi domain (SCR repeat) 55.5 1.6e-13 1 PF07974.3.ls EGF-like domain 26.7 7.8e-05 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00193.8.fs 1/2 173 268 .. 1 104 [] 179.0 1.2e-80 PF00193.8.ls 1/2 173 268 .. 1 104 [] 180.9 2.9e-51 PF00193.8.ls 2/2 274 370 .. 1 104 [] 192.2 1.1e-54 PF00193.8.fs 2/2 274 370 .. 1 104 [] 190.3 1e-85 PF00008.17.fs 1/2 1026 1057 .. 1 38 [] 33.5 1.8e-08 PF00008.17.ls 1/2 1026 1057 .. 1 38 [] 35.3 2e-07 PF00008.17.ls 2/2 1064 1095 .. 1 38 [] 28.4 2.3e-05 PF00008.17.fs 2/2 1064 1095 .. 1 38 [] 26.6 1.5e-06 PF00059.11.fs 3/3 1119 1224 .. 1 125 [] 142.3 1.2e-39 PF00059.11.ls 1/1 1119 1224 .. 1 125 [] 144.1 3.4e-40 PF00084.11.fs 1/1 1229 1285 .. 1 65 [] 55.5 1.6e-13 PF00084.11.ls 1/1 1229 1285 .. 1 65 [] 57.4 4.4e-14 Alignments of top-scoring domains: PF00193.8.fs: domain 1 of 2, from 173 to 268: score 179.0, E = 1.2e-80 *->GeVFhyrapsgRYkltFeEAqaaClrqgAriATtgQLyAAwkgGfdq G+VFhyr+ RY+ltF+EAq+aC+ A iA + +L+AA ++Gfd fg02848 173 GVVFHYRSARDRYALTFAEAQEACRLSSAIIAAPRHLQAAFEDGFDN 219 CdAGWLADgsVRYPIvkPRenCgGdkdgfpGVRtyYlfpNQTGfpddpss CdAGWL+D++VRYPI+ R++C+Gd + pGVR y G + +p++ fg02848 220 CDAGWLSDRTVRYPITQSRPGCYGDRSSLPGVRSY-------GRR-NPQE 261 rYDvYCF<-* +YDvYCF fg02848 262 LYDVYCF 268 PF00193.8.ls: domain 1 of 2, from 173 to 268: score 180.9, E = 2.9e-51 *->GeVFhyrapsgRYkltFeEAqaaClrqgAriATtgQLyAAwkgGfdq G+VFhyr+ RY+ltF+EAq+aC+ A iA + +L+AA ++Gfd fg02848 173 GVVFHYRSARDRYALTFAEAQEACRLSSAIIAAPRHLQAAFEDGFDN 219 CdAGWLADgsVRYPIvkPRenCgGdkdgfpGVRtyYlfpNQTGfpddpss CdAGWL+D++VRYPI+ R++C+Gd + pGVR y G + +p++ fg02848 220 CDAGWLSDRTVRYPITQSRPGCYGDRSSLPGVRSY-------GRR-NPQE 261 rYDvYCF<-* +YDvYCF fg02848 262 LYDVYCF 268 PF00193.8.ls: domain 2 of 2, from 274 to 370: score 192.2, E = 1.1e-54 *->GeVFhyrapsgRYkltFeEAqaaClrqgAriATtgQLyAAwkgGfdq GeVF++ + lt + A+a C+rqgA +A++gQL Aw G+dq fg02848 274 GEVFYVGPAR---RLTLAGARAQCRRQGAALASVGQLHLAWHEGLDQ 317 CdAGWLADgsVRYPIvkPRenCgGdkdgfpGVRtyYlfpNQTGfpddpss Cd+GWLADgsVRYPI++PR++CgG pGVRt+Y+f+N TGfp +p + fg02848 318 CDPGWLADGSVRYPIQTPRRRCGGPA---PGVRTVYRFANRTGFP-SPAE 363 rYDvYCF<-* r+D+YCF fg02848 364 RFDAYCF 370 PF00193.8.fs: domain 2 of 2, from 274 to 370: score 190.3, E = 1e-85 *->GeVFhyrapsgRYkltFeEAqaaClrqgAriATtgQLyAAwkgGfdq GeVF++ + lt + A+a C+rqgA +A++gQL Aw G+dq fg02848 274 GEVFYVGPAR---RLTLAGARAQCRRQGAALASVGQLHLAWHEGLDQ 317 CdAGWLADgsVRYPIvkPRenCgGdkdgfpGVRtyYlfpNQTGfpddpss Cd+GWLADgsVRYPI++PR++CgG pGVRt+Y+f+N TGfp +p + fg02848 318 CDPGWLADGSVRYPIQTPRRRCGGPA---PGVRTVYRFANRTGFP-SPAE 363 rYDvYCF<-* r+D+YCF fg02848 364 RFDAYCF 370 PF00008.17.fs: domain 1 of 2, from 1026 to 1057: score 33.5, E = 1.8e-08 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C n pC++gGtC+ +++y C C++G ++G++C fg02848 1026 CENN--PCLHGGTCNANGTMYGCSCDQG----FAGENC 1057 PF00008.17.ls: domain 1 of 2, from 1026 to 1057: score 35.3, E = 2e-07 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C n pC++gGtC+ +++y C C++G ++G++C fg02848 1026 CENN--PCLHGGTCNANGTMYGCSCDQG----FAGENC 1057 PF00008.17.ls: domain 2 of 2, from 1064 to 1095: score 28.4, E = 2.3e-05 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C pC ngGtC+d +g+ C C p y G +C fg02848 1064 CLCS--PCENGGTCIDEVNGFVCLCLPS----YGGSFC 1095 PF00008.17.fs: domain 2 of 2, from 1064 to 1095: score 26.6, E = 1.5e-06 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C pC ngGtC+d +g+ C C p y G +C fg02848 1064 CLCS--PCENGGTCIDEVNGFVCLCLPS----YGGSFC 1095 PF00059.11.fs: domain 3 of 3, from 1119 to 1224: score 142.3, E = 1.2e-39 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty ++ W++Ae+ C+++ gh L+s++s+eE+ +f++s+ +++ fg02848 1119 HRRAWEDAEKDCRRRSGH--LTSVHSPEEH----SFINSFG---HEN 1156 aWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEdCv +WIGL+d+ +e +++w td++++ + nW++++P+n g+EdCv fg02848 1157 TWIGLNDRIVERDFQW----TDNTGLQFE-NWRENQPDNFFA--GGEDCV 1199 eiytdtdflaGkWnDepCdsklpyvCef<-* ++ + + G+WnD+pC++ lpyvC++ fg02848 1200 VMVAHES---GRWNDVPCNYNLPYVCKK 1224 PF00059.11.ls: domain 1 of 1, from 1119 to 1224: score 144.1, E = 3.4e-40 *->esktWaeAelaCqkegghAHLvsIqsaeEqsfvvafltsltkksnty ++ W++Ae+ C+++ gh L+s++s+eE+ +f++s+ +++ fg02848 1119 HRRAWEDAEKDCRRRSGH--LTSVHSPEEH----SFINSFG---HEN 1156 aWIGLtdintegtwvwegwetdgspvnytenWapgePnnrgnhGgnEdCv +WIGL+d+ +e +++w td++++ + nW++++P+n g+EdCv fg02848 1157 TWIGLNDRIVERDFQW----TDNTGLQFE-NWRENQPDNFFA--GGEDCV 1199 eiytdtdflaGkWnDepCdsklpyvCef<-* ++ + + G+WnD+pC++ lpyvC++ fg02848 1200 VMVAHES---GRWNDVPCNYNLPYVCKK 1224 PF00084.11.fs: domain 1 of 1, from 1229 to 1285: score 55.5, E = 1.6e-13 *->CplppPdieNGrvsss.kttyeypvGdtvtytCneGYrlvGsssitC C+ ppP +eN++ + +k +y + tv+y+CneG+ + ++i+C fg02848 1229 CG-PPPAVENASLIGArKAKYNV--HATVRYQCNEGFAQHHVATIRC 1272 tedggGgWsppllgelPkC<-* + + G+W+ p +C fg02848 1273 RSN--GKWDRPQ----IVC 1285 PF00084.11.ls: domain 1 of 1, from 1229 to 1285: score 57.4, E = 4.4e-14 *->CplppPdieNGrvsss.kttyeypvGdtvtytCneGYrlvGsssitC C+ ppP +eN++ + +k +y + tv+y+CneG+ + ++i+C fg02848 1229 CG-PPPAVENASLIGArKAKYNV--HATVRYQCNEGFAQHHVATIRC 1272 tedggGgWsppllgelPkC<-* + + G+W+ p +C fg02848 1273 RSN--GKWDRPQ----IVC 1285 //