hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-07133456/chunk_1/iprscan-20080809-07133456.nocrc
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Query sequence: fg02848
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00445                                                 415.1   3.9e-120   2
SM00034                                                 153.7    1.9e-41   1
SM00181                                                  62.2    6.8e-14   2
SM00032                                                  57.2    2.1e-12   1
SM00179                                                  54.5    1.3e-11   2
SM00409                                                  35.1    9.5e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00409    1/1      58   172 ..     1    58 []    35.1  9.5e-06
SM00445    1/2     172   269 ..     1   107 []   199.9  2.3e-55
SM00445    2/2     273   371 ..     1   107 []   215.1    6e-60
SM00179    1/2    1022  1058 ..     1    34 []     9.5     0.11
SM00181    1/2    1025  1058 ..     1    32 []    32.3  6.5e-05
SM00179    2/2    1060  1096 ..     1    34 []    45.0    1e-08
SM00181    2/2    1063  1096 ..     1    32 []    29.8  0.00037
SM00034    1/1    1102  1223 ..     1   141 []   153.7  1.9e-41
SM00032    1/1    1229  1285 ..     1    79 []    57.2  2.1e-12

Alignments of top-scoring domains:
SM00409: domain 1 of 1, from 58 to 172: score 35.1, E = 9.5e-06
                   *->pp.vtvkeGesvtLtC.as............titWy...........
                      +++v + + e v L+C ++  + ++   + ++i+W++ ++ ++++++
     fg02848    58    SGsVQAALAELVALPClFTlqprpsaardapRIKWTkvrtasgqrqd 104  

                   ..................................LtI.nvtpeDsesgGt
                    +    +++  +  ++ +++ + ++ ++++ + +L +++++++Ds   G 
     fg02848   105 lpilvakdnvvrvakswqgrvslpsyprrranatLLLgPLRASDS---GL 151  

                   YtCaat.sgsasseqgttLtVl<-*
                   Y+C++ ++ ++++ + + L+V+   
     fg02848   152 YRCQVVrGIEDEQ-DLVPLEVT    172  

SM00445: domain 1 of 2, from 172 to 269: score 199.9, E = 2.3e-55
                   *->dGgVFhlearnGrykLtFaEAreaCeaqGArLAtvgQLyaAwkglGF
                      +G+VFh++++++ry+LtFaEA+eaC++ +A +A +++L+aA+++ GF
     fg02848   172    TGVVFHYRSARDRYALTFAEAQEACRLSSAIIAAPRHLQAAFED-GF 217  

                   dqCdaGWLaDGsVrYPIvtPrprCGgDsdglpGVRtVYlfaNQyGfpdpd
                   d+CdaGWL+D++VrYPI++ rp+C+gD++ lpGVR+       yG ++p+
     fg02848   218 DNCDAGWLSDRTVRYPITQSRPGCYGDRSSLPGVRS-------YGRRNPQ 260  

                   serYDAYCFr<-*
                   + +YD+YCF+   
     fg02848   261 E-LYDVYCFA    269  

SM00445: domain 2 of 2, from 273 to 371: score 215.1, E = 6e-60
                   *->dGgVFhlearnGrykLtFaEAreaCeaqGArLAtvgQLyaAwkglGF
                       G+VF++ +    ++Lt+a+Ar++C++qGA LA+vgQL+ Aw++ G+
     fg02848   273    GGEVFYVGP---ARRLTLAGARAQCRRQGAALASVGQLHLAWHE-GL 315  

                   dqCdaGWLaDGsVrYPIvtPrprCGgDsdglpGVRtVYlfaNQyGfpdpd
                   dqCd+GWLaDGsVrYPI+tPr+rCGg   + pGVRtVY+faN++Gfp p 
     fg02848   316 DQCDPGWLADGSVRYPIQTPRRRCGG---PAPGVRTVYRFANRTGFPSPA 362  

                   serYDAYCFr<-*
                   + r+DAYCFr   
     fg02848   363 E-RFDAYCFR    371  

SM00179: domain 1 of 2, from 1022 to 1058: score 9.5, E = 0.11
                   *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-*
                        D C+++pC +GG   tC  +   Y C+C++G+ + nCe   
     fg02848  1022    HSDPCennPCLHGG---TCNAnGTMYGCsCDQGFAgENCE    1058 

SM00181: domain 1 of 2, from 1025 to 1058: score 32.3, E = 6.5e-05
                   *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-*
                      +C+++pC +G     GtC  +++ y C+C  +G+ g++Ce   
     fg02848  1025    PCEnnPCLHG-----GTCNangtMYGCsCD-QGFAGeNCE    1058 

SM00179: domain 2 of 2, from 1060 to 1096: score 45.0, E = 1e-08
                   *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-*
                      DiD+C  +pC nGG   tCi++v+++ C C p y +  Ce   
     fg02848  1060    DIDDClcsPCENGG---TCIDeVNGFVClCLPSYGgSFCE    1096 

SM00181: domain 2 of 2, from 1063 to 1096: score 29.8, E = 0.00037
                   *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-*
                      +C+ +pC+nG     GtCi++ +++ C C  p y g+ Ce   
     fg02848  1063    DCLcsPCENG-----GTCIdevnGFVClCL-PSYGGsFCE    1096 

SM00034: domain 1 of 1, from 1102 to 1223: score 153.7, E = 1.9e-41
                   *->CpstpsgWvsyprpnkyfggkCYkfst....WadAqafCqslgprtg
                      C   + gW+++       +g+CY+++ +++ W+dA++ C++      
     fg02848  1102    C---DRGWHKF-------QGHCYRYFAhrraWEDAEKDCRRRS---- 1134 

                   rvkgghLasIhseeEndFltsl....yWIGLs.....g.wqWsDGsgvip
                       ghL s+hs+eE++F++s+++++ WIGL+++  ++++qW+D++g   
     fg02848  1135 ----GHLTSVHSPEEHSFINSFghenTWIGLNdriveRdFQWTDNTG--- 1177 

                   laltpvsytnWapgePnnePnnkfrhgnggngdCvvls......WndvsC
                         ++ nW+ +    +P+n    +  g++dCvv+  + +++Wndv+C
     fg02848  1178 -----LQFENWREN----QPDN----FFAGGEDCVVMVahesgrWNDVPC 1214 

                   tskdpadklpfiCk<-*
                   ++      lp++Ck   
     fg02848  1215 NY-----NLPYVCK    1223 

SM00032: domain 1 of 1, from 1229 to 1285: score 57.2, E = 2.1e-12
                   *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv
                      C++Pp   ++en+++++ +       k +y++  tv+y+Cn+G+  +
     fg02848  1229    CGpPP---AVENASLIGAR-------KAKYNVHATVRYQCNEGFAQH 1265 

                   GgsqpekSrestsstitCtsn..WspppsgplPtC<-*
                                +ti+C sn++W+ p+      C   
     fg02848  1266 H-----------VATIRCRSNgkWDRPQ----IVC    1285 

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