# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofg03009.fasta.nr -Q fg03009.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fg03009, 157 aa vs /cdna2/lib/nr/nr library 3071326396 residues in 8985982 sequences statistics sampled from 60000 to 8984967 sequences Expectation_n fit: rho(ln(x))= 4.5752+/-0.000183; mu= 9.9314+/- 0.010 mean_var=70.3543+/-13.504, 0's: 36 Z-trim: 39 B-trim: 6 in 2/67 Lambda= 0.152908 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8985982) gi|168278353|dbj|BAG11056.1| stromal cell-derived ( 137) 909 208.6 3.1e-52 gi|148667157|gb|EDK99573.1| chemokine (C-X-C motif ( 142) 716 166.0 2.1e-39 gi|50400180|gb|AAT76437.1| stromal cell-derived fa ( 119) 677 157.4 7.2e-37 gi|60279262|ref|NP_001012495.1| stromal cell deriv ( 119) 653 152.1 2.8e-35 gi|149690618|ref|XP_001489694.1| PREDICTED: simila ( 119) 650 151.4 4.5e-35 gi|7546852|gb|AAF63712.1| stromal cell-derived fac ( 119) 647 150.7 7.1e-35 gi|85067619|gb|ABC69270.1| stromal cell-derived fa ( 140) 597 139.8 1.7e-31 gi|1220364|gb|AAB39333.1| pre-B cell stimulating f ( 89) 592 138.5 2.6e-31 gi|10334450|emb|CAC10202.1| chemokine (C-X-C motif ( 92) 592 138.5 2.7e-31 gi|1352728|sp|P48061.1|SDF1_HUMAN RecName: Full=St ( 93) 592 138.5 2.7e-31 gi|85067625|gb|ABC69273.1| stromal cell-derived fa ( 100) 592 138.5 2.8e-31 gi|85067623|gb|ABC69272.1| stromal cell-derived fa ( 90) 586 137.2 6.5e-31 gi|25987928|gb|AAN76086.1|AF449283_1 chemokine CXC ( 89) 582 136.3 1.2e-30 gi|55730323|emb|CAH91884.1| hypothetical protein [ ( 93) 573 134.3 4.9e-30 gi|3165375|dbj|BAA28601.1| stromal cell-derived fa ( 89) 572 134.1 5.5e-30 gi|3914966|sp|O62657.1|SDF1_FELCA RecName: Full=St ( 93) 572 134.1 5.7e-30 gi|730278|sp|P40224.1|SDF1_MOUSE RecName: Full=Str ( 89) 568 133.2 1e-29 gi|393182|gb|AAA40101.1| cytokine gi|1304175|d ( 93) 568 133.2 1e-29 gi|56459109|gb|AAU89475.2| stromal cell-derived fa ( 89) 562 131.9 2.5e-29 gi|75766680|gb|ABA28310.1| chemokine (C-X-C motif) ( 89) 561 131.6 3e-29 gi|75766682|gb|ABA28311.1| chemokine (C-X-C motif) ( 93) 561 131.7 3.1e-29 gi|6007841|gb|AAF01066.1|AF189724_1 stromal cell-d ( 89) 559 131.2 4e-29 gi|149049653|gb|EDM02107.1| chemokine (C-X-C motif ( 93) 559 131.2 4.2e-29 gi|126272242|ref|XP_001365052.1| PREDICTED: simila ( 119) 559 131.3 4.9e-29 gi|112362023|gb|AAI19980.1| CXCL12 protein [Bos ta ( 89) 556 130.5 6.4e-29 gi|194679380|ref|XP_001789998.1| PREDICTED: stroma ( 90) 556 130.5 6.4e-29 gi|194679378|ref|XP_001789992.1| PREDICTED: stroma ( 93) 556 130.6 6.6e-29 gi|194679376|ref|XP_001790000.1| PREDICTED: stroma ( 117) 556 130.7 7.7e-29 gi|35164022|gb|AAQ84094.1| CXCL12 chemokine [Sus s ( 116) 548 128.9 2.6e-28 gi|40804400|gb|AAR91696.1| stromal cell-derived fa ( 131) 488 115.7 2.7e-24 gi|126272240|ref|XP_001364971.1| PREDICTED: simila ( 93) 486 115.1 2.9e-24 gi|224052530|ref|XP_002187333.1| PREDICTED: putati ( 131) 484 114.8 5e-24 gi|61680128|pdb|1VMC|A Chain A, Stroma Cell-Derive ( 71) 478 113.2 8.2e-24 gi|149584983|ref|XP_001512801.1| PREDICTED: simila ( 92) 471 111.8 2.9e-23 gi|118138703|pdb|2J7Z|A Chain A, Crystal Structure ( 68) 468 111.0 3.7e-23 gi|13399638|pdb|1QG7|A Chain A, Stroma Cell-Derive ( 67) 462 109.7 9.1e-23 gi|134104968|pdb|2NWG|A Chain A, Structure Of Cxcl ( 68) 461 109.5 1.1e-22 gi|40557618|gb|AAR88102.1| stromal cell derived fa ( 89) 462 109.8 1.1e-22 gi|197127158|gb|ACH43656.1| putative stromal cell ( 89) 458 108.9 2.1e-22 gi|210060747|pdb|2K01|A Chain A, Structure Of A Lo ( 70) 455 108.2 2.7e-22 gi|3659912|pdb|1A15|A Chain A, Sdf-1alpha gi|3 ( 67) 454 107.9 3.1e-22 gi|114630326|ref|XP_001157389.1| PREDICTED: chemok ( 120) 456 108.6 3.4e-22 gi|71682200|gb|AAI00185.1| MGC114768 protein [Xeno ( 89) 442 105.4 2.4e-21 gi|59809114|gb|AAH89703.1| Chemokine (C-X-C motif) ( 93) 442 105.4 2.4e-21 gi|17907349|emb|CAC82196.1| stromal-derived factor ( 94) 442 105.4 2.5e-21 gi|114630328|ref|XP_001157443.1| PREDICTED: chemok ( 141) 376 91.0 7.9e-17 gi|114630330|ref|XP_001157495.1| PREDICTED: chemok ( 90) 371 89.7 1.2e-16 gi|114630324|ref|XP_001157556.1| PREDICTED: simila ( 94) 371 89.7 1.3e-16 gi|157931819|gb|ABW04998.1| CXCL12 [Sus scrofa] ( 59) 323 79.0 1.4e-13 gi|61224809|gb|AAX40736.1| CXCL12 [Ictalurus punct ( 99) 307 75.7 2.4e-12 >>gi|168278353|dbj|BAG11056.1| stromal cell-derived fact (137 aa) initn: 909 init1: 909 opt: 909 Z-score: 1095.0 bits: 208.6 E(): 3.1e-52 Smith-Waterman score: 909; 100.000% identity (100.000% similar) in 137 aa overlap (21-157:1-137) 10 20 30 40 50 60 fg0300 PLGVRPPTRARPPARPPARAMNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVA :::::::::::::::::::::::::::::::::::::::: gi|168 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVA 10 20 30 40 70 80 90 100 110 120 fg0300 RANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 RANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKR 50 60 70 80 90 100 130 140 150 fg0300 KDRKKEATEEEKGCPEKEKLVICHLEMDHSSLALGAL ::::::::::::::::::::::::::::::::::::: gi|168 KDRKKEATEEEKGCPEKEKLVICHLEMDHSSLALGAL 110 120 130 >>gi|148667157|gb|EDK99573.1| chemokine (C-X-C motif) li (142 aa) initn: 796 init1: 715 opt: 716 Z-score: 864.8 bits: 166.0 E(): 2.1e-39 Smith-Waterman score: 716; 82.031% identity (95.312% similar) in 128 aa overlap (11-138:14-141) 10 20 30 40 50 fg0300 PLGVRPPTRARPPARPPARAMNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFES .:::::::.::.::::.::.:::.:::.::::::::::::::::::: gi|148 SRSTSVSSCCPALQPPARPPAHAMDAKVVAVLALVLAALCISDGKPVSLSYRCPCRFFES 10 20 30 40 50 60 60 70 80 90 100 110 fg0300 HVARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVG :.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 HIARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVG 70 80 90 100 110 120 120 130 140 150 fg0300 KKRKDRKKEATEEEKGCPEKEKLVICHLEMDHSSLALGAL ::.: ::. ...:. ... gi|148 KKEKIGKKKRQKKRKAAQKRKN 130 140 >>gi|50400180|gb|AAT76437.1| stromal cell-derived factor (119 aa) initn: 755 init1: 677 opt: 677 Z-score: 819.2 bits: 157.4 E(): 7.2e-37 Smith-Waterman score: 677; 87.288% identity (94.915% similar) in 118 aa overlap (21-138:1-118) 10 20 30 40 50 60 fg0300 PLGVRPPTRARPPARPPARAMNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVA :::::::::::::::::::::::::::::::::::::::: gi|504 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVA 10 20 30 40 70 80 90 100 110 120 fg0300 RANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|504 RANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKE 50 60 70 80 90 100 130 140 150 fg0300 KDRKKEATEEEKGCPEKEKLVICHLEMDHSSLALGAL : ::. ...:. ... gi|504 KIGKKKRQKKRKAAQKRKN 110 >>gi|60279262|ref|NP_001012495.1| stromal cell derived f (119 aa) initn: 722 init1: 644 opt: 653 Z-score: 790.6 bits: 152.1 E(): 2.8e-35 Smith-Waterman score: 653; 82.203% identity (94.915% similar) in 118 aa overlap (21-138:1-118) 10 20 30 40 50 60 fg0300 PLGVRPPTRARPPARPPARAMNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVA :.::::.::.:::.:::.::::::::::::::::::::.: gi|602 MDAKVVAVLALVLAALCISDGKPVSLSYRCPCRFFESHIA 10 20 30 40 70 80 90 100 110 120 fg0300 RANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|602 RANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKE 50 60 70 80 90 100 130 140 150 fg0300 KDRKKEATEEEKGCPEKEKLVICHLEMDHSSLALGAL : ::. ...:. ... gi|602 KIGKKKRQKKRKAAQKRKN 110 >>gi|149690618|ref|XP_001489694.1| PREDICTED: similar to (119 aa) initn: 719 init1: 641 opt: 650 Z-score: 787.0 bits: 151.4 E(): 4.5e-35 Smith-Waterman score: 650; 82.203% identity (94.915% similar) in 118 aa overlap (21-138:1-118) 10 20 30 40 50 60 fg0300 PLGVRPPTRARPPARPPARAMNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVA :.::::.::.:::.:::::::::::::::::::::::::: gi|149 MDAKVVAVLALVLAALCLSDGKPVSLSYRCPCRFFESHVA 10 20 30 40 70 80 90 100 110 120 fg0300 RANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKR :::.::::::::::::::::::::.::::::::::::::::::::::::::::::::::. gi|149 RANIKHLKILNTPNCALQIVARLKHNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKE 50 60 70 80 90 100 130 140 150 fg0300 KDRKKEATEEEKGCPEKEKLVICHLEMDHSSLALGAL : ::. ...:. ... gi|149 KIGKKKRQKKRKAAQKRKN 110 >>gi|7546852|gb|AAF63712.1| stromal cell-derived factor- (119 aa) initn: 718 init1: 638 opt: 647 Z-score: 783.5 bits: 150.7 E(): 7.1e-35 Smith-Waterman score: 647; 82.203% identity (94.915% similar) in 118 aa overlap (21-138:1-118) 10 20 30 40 50 60 fg0300 PLGVRPPTRARPPARPPARAMNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVA :.::::.::.:::.:::.:::::::::::::::::::::: gi|754 MDAKVVAVLALVLAALCISDGKPVSLSYRCPCRFFESHVA 10 20 30 40 70 80 90 100 110 120 fg0300 RANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKR ::::::::::::::::::::::::.::::::::::::::::::.:::::::::::::::. gi|754 RANVKHLKILNTPNCALQIVARLKSNNRQVCIDPKLKWIQEYLDKALNKGRREEKVGKKE 50 60 70 80 90 100 130 140 150 fg0300 KDRKKEATEEEKGCPEKEKLVICHLEMDHSSLALGAL : ::. ...:. .:. gi|754 KIGKKKRQKKRKAAQKKKN 110 >>gi|85067619|gb|ABC69270.1| stromal cell-derived factor (140 aa) initn: 591 init1: 591 opt: 597 Z-score: 723.0 bits: 139.8 E(): 1.7e-31 Smith-Waterman score: 597; 73.438% identity (82.031% similar) in 128 aa overlap (21-147:1-126) 10 20 30 40 50 60 fg0300 PLGVRPPTRARPPARPPARAMNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVA :::::::::::::::::::::::::::::::::::::::: gi|850 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVA 10 20 30 40 70 80 90 100 110 120 fg0300 RANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKR ::::::::::::::::::::::::::::::::::::::::::::::::. .::. gi|850 RANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNNLISAAPAGKRV 50 60 70 80 90 100 130 140 150 fg0300 -KDRKKEATEEEKGCPEKEKLVICHLEMDHSSLALGAL . ..:: . : :.... gi|850 IAGARALHPSPPRACPTARAL--CEIRLWPPPEWSWPSPGDV 110 120 130 140 >>gi|1220364|gb|AAB39333.1| pre-B cell stimulating facto (89 aa) initn: 592 init1: 592 opt: 592 Z-score: 719.5 bits: 138.5 E(): 2.6e-31 Smith-Waterman score: 592; 100.000% identity (100.000% similar) in 89 aa overlap (21-109:1-89) 10 20 30 40 50 60 fg0300 PLGVRPPTRARPPARPPARAMNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVA :::::::::::::::::::::::::::::::::::::::: gi|122 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVA 10 20 30 40 70 80 90 100 110 120 fg0300 RANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKR ::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 RANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNK 50 60 70 80 130 140 150 fg0300 KDRKKEATEEEKGCPEKEKLVICHLEMDHSSLALGAL >>gi|10334450|emb|CAC10202.1| chemokine (C-X-C motif) li (92 aa) initn: 592 init1: 592 opt: 592 Z-score: 719.3 bits: 138.5 E(): 2.7e-31 Smith-Waterman score: 592; 100.000% identity (100.000% similar) in 89 aa overlap (21-109:1-89) 10 20 30 40 50 60 fg0300 PLGVRPPTRARPPARPPARAMNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVA :::::::::::::::::::::::::::::::::::::::: gi|103 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVA 10 20 30 40 70 80 90 100 110 120 fg0300 RANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKR ::::::::::::::::::::::::::::::::::::::::::::::::: gi|103 RANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKFKM 50 60 70 80 90 130 140 150 fg0300 KDRKKEATEEEKGCPEKEKLVICHLEMDHSSLALGAL >>gi|1352728|sp|P48061.1|SDF1_HUMAN RecName: Full=Stroma (93 aa) initn: 592 init1: 592 opt: 592 Z-score: 719.2 bits: 138.5 E(): 2.7e-31 Smith-Waterman score: 592; 100.000% identity (100.000% similar) in 89 aa overlap (21-109:1-89) 10 20 30 40 50 60 fg0300 PLGVRPPTRARPPARPPARAMNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVA :::::::::::::::::::::::::::::::::::::::: gi|135 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVA 10 20 30 40 70 80 90 100 110 120 fg0300 RANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKR ::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 RANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKRFKM 50 60 70 80 90 130 140 150 fg0300 KDRKKEATEEEKGCPEKEKLVICHLEMDHSSLALGAL 157 residues in 1 query sequences 3071326396 residues in 8985982 library sequences Tcomplib [34.26] (8 proc) start: Thu Jun 18 07:50:24 2009 done: Thu Jun 18 07:54:16 2009 Total Scan time: 762.390 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]