hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-07195654/chunk_1/iprscan-20080809-07195654.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fg03084 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00620.17.fs RhoGAP domain 150.2 4.9e-44 1 PF00620.17.ls RhoGAP domain 151.1 2.6e-42 1 PF00018.18.fs SH3 domain 50.8 4.1e-13 1 PF00169.19.fs PH domain 44.6 4.1e-13 1 PF00018.18.ls SH3 domain 52.7 1.1e-12 1 PF00169.19.ls PH domain 46.6 7.8e-11 1 PF07653.7.fs Variant SH3 domain 23.8 3.4e-06 1 PF07653.7.ls Variant SH3 domain 25.5 0.00018 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00169.19.fs 1/1 373 476 .. 1 92 [] 44.6 4.1e-13 PF00169.19.ls 1/1 373 476 .. 1 92 [] 46.6 7.8e-11 PF00620.17.ls 1/1 498 654 .. 1 155 [] 151.1 2.6e-42 PF00620.17.fs 1/1 498 654 .. 2 155 .] 150.2 4.9e-44 PF00018.18.fs 1/1 774 829 .] 1 59 [] 50.8 4.1e-13 PF00018.18.ls 1/1 774 829 .] 1 59 [] 52.7 1.1e-12 PF07653.7.ls 1/1 775 829 .] 1 69 [] 25.5 0.00018 PF07653.7.fs 1/1 775 829 .] 1 69 [] 23.8 3.4e-06 Alignments of top-scoring domains: PF00169.19.fs: domain 1 of 1, from 373 to 476: score 44.6, E = 4.1e-13 *->vikeGwLlkkg...gkkswkkRyfvLfd....dvLlyykdkk...kk ++eG+L+++++++++ sw k+y++ ++++++ +++ ++ k++++ fg03084 373 YTMEGYLYVQEkrhFGTSWVKHYCTYQRdskqITMVPFDQKSggkGG 419 pkgsipLsgiqvtkvpdnkrkncFeirt.dr.etlllqaeseeerkeWvk s+ L++++ +k++++++++cF + dr+ +++ qa see+r+ W++ fg03084 420 EDESVILKSCTRRKTDSIEKRFCFDVEAvDRpGVITMQALSEEDRRLWME 469 aiqsair<-* a+ fg03084 470 AMDGREP 476 PF00169.19.ls: domain 1 of 1, from 373 to 476: score 46.6, E = 7.8e-11 *->vikeGwLlkkg...gkkswkkRyfvLfd....dvLlyykdkk...kk ++eG+L+++++++++ sw k+y++ ++++++ +++ ++ k++++ fg03084 373 YTMEGYLYVQEkrhFGTSWVKHYCTYQRdskqITMVPFDQKSggkGG 419 pkgsipLsgiqvtkvpdnkrkncFeirt.dr.etlllqaeseeerkeWvk s+ L++++ +k++++++++cF + dr+ +++ qa see+r+ W++ fg03084 420 EDESVILKSCTRRKTDSIEKRFCFDVEAvDRpGVITMQALSEEDRRLWME 469 aiqsair<-* a+ fg03084 470 AMDGREP 476 PF00620.17.ls: domain 1 of 1, from 498 to 654: score 151.1, E = 2.6e-42 *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdl. i++kCi ++e rG++++G+yR+ G sr+++L + + ++ fg03084 498 -SIIRKCIHAVETRGINEQGLYRIVGVNSRVQKLLSVLMDPKTASEt 543 ..ndleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeer ++ e + +++s+LK++LR LP PL+ +++ fi+ aak+e+ e r fg03084 544 etDICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIK-AAKLENQESR 592 lealrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPt +++++ l++ LP+ Nr+ L+ L+ hL++Va n+++N+Mt+ NL++vFgPt fg03084 593 VSEIHSLVHRLPEKNRQMLQLLMNHLANVANNHKQNLMTVANLGVVFGPT 642 Llrppdgd.sad<-* Llrp++++ a+ fg03084 643 LLRPQEETvAAI 654 PF00620.17.fs: domain 1 of 1, from 498 to 654: score 150.2, E = 4.9e-44 *->livekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdl.. i++kCi ++e rG++++G+yR+ G sr+++L + + +++ fg03084 498 SIIRKCIHAVETRGINEQGLYRIVGVNSRVQKLLSVLMDPKTASEte 544 .ndleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerl + e + +++s+LK++LR LP PL+ +++ fi+ aak+e+ e r+ fg03084 545 tDICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIK-AAKLENQESRV 593 ealrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtL ++++ l++ LP+ Nr+ L+ L+ hL++Va n+++N+Mt+ NL++vFgPtL fg03084 594 SEIHSLVHRLPEKNRQMLQLLMNHLANVANNHKQNLMTVANLGVVFGPTL 643 lrppdgd.sad<-* lrp++++ a+ fg03084 644 LRPQEETvAAI 654 PF00018.18.fs: domain 1 of 1, from 774 to 829: score 50.8, E = 4.1e-13 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk +k++ALY+ +a++++ELsF+ G v+ ++ s +pgW++g l+ Gk fg03084 774 RKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLN---GK 817 eGliPsNYVepv<-* +GliP NYVe fg03084 818 TGLIPENYVEFL 829 PF00018.18.ls: domain 1 of 1, from 774 to 829: score 52.7, E = 1.1e-12 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk +k++ALY+ +a++++ELsF+ G v+ ++ s +pgW++g l+ Gk fg03084 774 RKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLN---GK 817 eGliPsNYVepv<-* +GliP NYVe fg03084 818 TGLIPENYVEFL 829 PF07653.7.ls: domain 1 of 1, from 775 to 829: score 25.5, E = 0.00018 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.... +++a+ ++a + +e Ls+++G V+ + +++++ fg03084 775 KAKALYACKA-EHDSE------LSFTAGT---VF-----DNVHpsqe 806 .gwwegeslggGrrrRGlvPssaveel<-* +gw eg++ +G++ Gl+P ++ve l fg03084 807 pGWLEGTL--NGKT--GLIPENYVEFL 829 PF07653.7.fs: domain 1 of 1, from 775 to 829: score 23.8, E = 3.4e-06 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.... +++a+ ++a + +e Ls+++G V+ + +++++ fg03084 775 KAKALYACKA-EHDSE------LSFTAGT---VF-----DNVHpsqe 806 .gwwegeslggGrrrRGlvPssaveel<-* +gw eg++ +G++ Gl+P ++ve l fg03084 807 pGWLEGTL--NGKT--GLIPENYVEFL 829 //