hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-07263654/chunk_1/iprscan-20080809-07263654.nocrc
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Query sequence: fg03090
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00641.9.ls Zn-finger in Ran binding protein and others     41.5    2.7e-09   3
PF00641.9.fs Zn-finger in Ran binding protein and others     33.4    4.8e-08   3
PF00627.21.fs UBA/TS-N domain                                 19.9    6.6e-05   1
PF00627.21.ls UBA/TS-N domain                                 21.9     0.0021   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00641.9.fs   2/3     395   424 ..     1    32 []    21.5  7.8e-05
PF00641.9.ls   2/3     395   424 ..     1    32 []    23.4  0.00073
PF00627.21.fs   1/1     620   660 ..     1    41 []    19.9  6.6e-05
PF00627.21.ls   1/1     620   660 ..     1    41 []    21.9   0.0021
PF01485.11.ls   1/1     824   886 ..     1    72 []     7.8   0.0027

Alignments of top-scoring domains:
PF00641.9.fs: domain 2 of 3, from 395 to 424: score 21.5, E = 7.8e-05
                   *->ragsdWdCissClvqNfatstkCvaCqapkps<-*
                        g +W C  sC++ N+a ++ C +C+ p+     
     fg03090   395    ARG-RWAC-QSCTFENEAAAVLCSICERPRLA    424  

PF00641.9.ls: domain 2 of 3, from 395 to 424: score 23.4, E = 0.00073
                   *->ragsdWdCissClvqNfatstkCvaCqapkps<-*
                        g +W C  sC++ N+a ++ C +C+ p+     
     fg03090   395    ARG-RWAC-QSCTFENEAAAVLCSICERPRLA    424  

PF00627.21.fs: domain 1 of 1, from 620 to 660: score 19.9, E = 6.6e-05
                   *->ideeavkqLreMTGf.dreeakkALeatngnverAvewLleh<-*
                          +v++L+++ Gf+++e   +AL +++g+v rA+  L+++   
     fg03090   620    TRRRKVQELQSL-GFgPEEGSLQALFQHGGDVSRALTELQRQ    660  

PF00627.21.ls: domain 1 of 1, from 620 to 660: score 21.9, E = 0.0021
                   *->ideeavkqLreMTGf.dreeakkALeatngnverAvewLleh<-*
                          +v++L+++ Gf+++e   +AL +++g+v rA+  L+++   
     fg03090   620    TRRRKVQELQSL-GFgPEEGSLQALFQHGGDVSRALTELQRQ    660  

PF01485.11.ls: domain 1 of 1, from 824 to 886: score 7.8, E = 0.0027
                   *->eKYerlllesyvesnkdlkwCPapdCsyivrvtdlssgskeepssrr
                      + ++++l+e ++  +++  wC    Cs+             e ++  
     fg03090   824    ALFHKKLTEGVLMRDPKFLWCAQ--CSFGFIY---------EREQLE 859  

                   veCskGCgfeFCfnCkeew...HgplsC<-*
                   ++C++ C+  FC++Ck +w+++H++ sC   
     fg03090   860 ATCPQ-CHQTFCVRCKRQWeeqHRGRSC    886  

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