hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-07263654/chunk_1/iprscan-20080809-07263654.nocrc
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Query sequence: fg03090
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00547                                                  69.0    5.9e-16   3
SM00647                                                  68.5    8.1e-16   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00547    1/3     347   371 ..     1    25 []    22.5    0.045
SM00547    2/3     397   421 ..     1    25 []    34.0    2e-05
SM00547    3/3     456   480 ..     1    25 []    12.4     0.85
SM00647    1/2     824   886 ..     1    78 []    63.8  2.2e-14
SM00647    2/2     898   975 ..     1    78 []     4.8     0.54

Alignments of top-scoring domains:
SM00547: domain 1 of 3, from 347 to 371: score 22.5, E = 0.045
                   *->gdWeCpaCtflNfasrskCfaCgap<-*
                        W+C aC +lN++ +  C+aC+ p   
     fg03090   347    LPWHCAACAMLNEPWAVLCVACDRP    371  

SM00547: domain 2 of 3, from 397 to 421: score 34.0, E = 2e-05
                   *->gdWeCpaCtflNfasrskCfaCgap<-*
                      g W+C +Ctf+N+a +  C++C+ p   
     fg03090   397    GRWACQSCTFENEAAAVLCSICERP    421  

SM00547: domain 3 of 3, from 456 to 480: score 12.4, E = 0.85
                   *->gdWeCpaCtflNfasrskCfaCgap<-*
                      + W C +Ctf N +  ++C++C+     
     fg03090   456    QVWYCIHCTFCNSSPGWVCVMCNRT    480  

SM00647: domain 1 of 2, from 824 to 886: score 63.8, E = 2.2e-14
                   *->ekYerlllesyvesnpdlkwCPapdCsaairvtelstsrsaisgasd
                      + ++++l+e++++++p++ wC   +Cs++++ +              
     fg03090   824    ALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYE-------------- 854  

                   eegcnrvtCprkCgfsFCfrCkvew...HspvsC<-*
                     ++ ++tCp +C+  FC+rCk +w+++H++ sC   
     fg03090   855 -REQLEATCP-QCHQTFCVRCKRQWeeqHRGRSC    886  

SM00647: domain 2 of 2, from 898 to 975: score 4.8, E = 0.54
                   *->ekYerlllesyvesnpdlkwCPapdCsaairvtelstsrsaisgasd
                        Y+   l  y+    + + CP  +C + +                 
     fg03090   898    PEYQAQGLAMYLQE--NGIDCP--KCKFSYALA-------------- 926  

                   eegcnrvtCprkCgfsFCfrCkvew...................HspvsC
                    +gc +++C  +C+++FC+ C  ++  +++ ++++ + +++ ++H+p +C
     fg03090   927 RGGCMHFHCT-QCRHQFCSGCYNAFyaknkcpepncrvkkslhgHHPRDC 975  

                   <-*
                      
     fg03090     -     -    

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