# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofg03474.fasta.nr -Q fg03474.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fg03474, 470 aa vs /cdna2/lib/nr/nr library 3071326396 residues in 8985982 sequences statistics sampled from 60000 to 8980114 sequences Expectation_n fit: rho(ln(x))= 6.0427+/-0.00019; mu= 7.8001+/- 0.011 mean_var=99.6925+/-19.466, 0's: 34 Z-trim: 49 B-trim: 316 in 3/62 Lambda= 0.128453 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8985982) gi|114587170|ref|XP_001170874.1| PREDICTED: poly(r ( 426) 2745 518.9 1.1e-144 gi|12230429|sp|P57723.1|PCBP4_HUMAN RecName: Full= ( 403) 2611 494.1 3.2e-137 gi|109039278|ref|XP_001094397.1| PREDICTED: poly(r ( 403) 2600 492.0 1.3e-136 gi|73985377|ref|XP_849987.1| PREDICTED: similar to ( 403) 2570 486.5 6.2e-135 gi|114587168|ref|XP_001171145.1| PREDICTED: poly(r ( 433) 2560 484.6 2.4e-134 gi|62654235|ref|XP_343469.2| PREDICTED: similar to ( 403) 2557 484.1 3.3e-134 gi|119390858|sp|Q0VCU0.1|PCBP4_BOVIN RecName: Full ( 403) 2557 484.1 3.3e-134 gi|109039296|ref|XP_001093140.1| PREDICTED: poly(r ( 433) 2549 482.6 9.7e-134 gi|14715061|gb|AAH10694.1| Poly(rC) binding protei ( 403) 2548 482.4 1e-133 gi|12230430|sp|P57724.1|PCBP4_MOUSE RecName: Full= ( 403) 2546 482.0 1.3e-133 gi|149728835|ref|XP_001494599.1| PREDICTED: simila ( 403) 2543 481.5 2e-133 gi|12837891|dbj|BAB23990.1| unnamed protein produc ( 403) 2542 481.3 2.2e-133 gi|26346528|dbj|BAC36915.1| unnamed protein produc ( 403) 2539 480.7 3.3e-133 gi|73985375|ref|XP_860317.1| PREDICTED: similar to ( 432) 2523 477.8 2.7e-132 gi|73985371|ref|XP_860240.1| PREDICTED: similar to ( 404) 2514 476.1 8.2e-132 gi|126336339|ref|XP_001367908.1| PREDICTED: hypoth ( 410) 2433 461.1 2.7e-127 gi|9931476|gb|AAG02185.1| RNA binding protein MCG1 ( 369) 2329 441.8 1.6e-121 gi|109039306|ref|XP_001094040.1| PREDICTED: poly(r ( 369) 2318 439.7 6.6e-121 gi|114587212|ref|XP_001171209.1| PREDICTED: poly(r ( 396) 2190 416.0 9.6e-114 gi|109039303|ref|XP_001093704.1| PREDICTED: poly(r ( 396) 2184 414.9 2.1e-113 gi|33150676|gb|AAP97216.1|AF092441_1 CBP [Homo sap ( 397) 2168 412.0 1.6e-112 gi|114587208|ref|XP_001170794.1| PREDICTED: simila ( 364) 2088 397.1 4.4e-108 gi|149460511|ref|XP_001520914.1| PREDICTED: simila ( 440) 1980 377.2 5.4e-102 gi|109039287|ref|XP_001093464.1| PREDICTED: poly(r ( 323) 1960 373.4 5.6e-101 gi|114587218|ref|XP_001170857.1| PREDICTED: poly(r ( 323) 1960 373.4 5.6e-101 gi|73985373|ref|XP_860277.1| PREDICTED: similar to ( 329) 1935 368.7 1.4e-99 gi|9931474|gb|AAG02184.1|AF257770_1 RNA binding pr ( 424) 1795 342.9 1.1e-91 gi|16877720|gb|AAH17098.1| PCBP4 protein [Homo sap ( 360) 1531 293.9 5.2e-77 gi|109039281|ref|XP_001093353.1| PREDICTED: poly(r ( 360) 1520 291.8 2.1e-76 gi|114587210|ref|XP_001171226.1| PREDICTED: poly(r ( 421) 1508 289.7 1.1e-75 gi|109039293|ref|XP_001093811.1| PREDICTED: poly(r ( 421) 1508 289.7 1.1e-75 gi|73985365|ref|XP_860139.1| PREDICTED: similar to ( 360) 1498 287.8 3.6e-75 gi|109039299|ref|XP_001094154.1| PREDICTED: poly(r ( 413) 1442 277.4 5.3e-72 gi|114684801|ref|XP_001157699.1| PREDICTED: hypoth ( 347) 1334 257.4 4.9e-66 gi|109065041|ref|XP_001099640.1| PREDICTED: simila ( 347) 1334 257.4 4.9e-66 gi|73985369|ref|XP_533807.2| PREDICTED: similar to ( 422) 1335 257.6 5e-66 gi|73985367|ref|XP_860182.1| PREDICTED: similar to ( 378) 1328 256.3 1.1e-65 gi|114684793|ref|XP_001157578.1| PREDICTED: hypoth ( 351) 1306 252.2 1.8e-64 gi|193248243|dbj|BAC04327.2| unnamed protein produ ( 319) 1305 252.0 1.9e-64 gi|50927011|gb|AAH79196.1| Poly(rC) binding protei ( 319) 1300 251.0 3.6e-64 gi|193785510|dbj|BAG50876.1| unnamed protein produ ( 243) 1288 248.7 1.4e-63 gi|73996207|ref|XP_857309.1| PREDICTED: similar to ( 423) 1285 248.3 3.1e-63 gi|109065039|ref|XP_001099334.1| PREDICTED: simila ( 354) 1279 247.2 5.8e-63 gi|12239354|gb|AAG49443.1|AF141340_1 LYST-interact ( 276) 1264 244.3 3.3e-62 gi|209156062|gb|ACI34263.1| PolyrC-binding protein ( 318) 1244 240.7 4.8e-61 gi|28279638|gb|AAH45508.1| Poly(rC) binding protei ( 318) 1243 240.5 5.5e-61 gi|119617117|gb|EAW96711.1| poly(rC) binding prote ( 318) 1241 240.1 7.1e-61 gi|109096940|ref|XP_001105813.1| PREDICTED: simila ( 317) 1240 239.9 8e-61 gi|225707620|gb|ACO09656.1| PolyrC-binding protein ( 318) 1233 238.6 2e-60 gi|28317389|tpe|CAD29864.1| TPA: hnRNP-E2 b [Xenop ( 319) 1228 237.7 3.8e-60 >>gi|114587170|ref|XP_001170874.1| PREDICTED: poly(rC) b (426 aa) initn: 2745 init1: 2745 opt: 2745 Z-score: 2754.8 bits: 518.9 E(): 1.1e-144 Smith-Waterman score: 2745; 100.000% identity (100.000% similar) in 424 aa overlap (47-470:3-426) 20 30 40 50 60 70 fg0347 LQPLESLWQNSNGRRSSCTQGSRVSPPLDRAGQVAARTHSQVAVAPASPDRMSGSDGGLE :::::::::::::::::::::::::::::: gi|114 MEAGQVAARTHSQVAVAPASPDRMSGSDGGLE 10 20 30 80 90 100 110 120 130 fg0347 EEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGST 40 50 60 70 80 90 140 150 160 170 180 190 fg0347 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AAVFHAVSMIAFKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 100 110 120 130 140 150 200 210 220 230 240 250 fg0347 TTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLG 160 170 180 190 200 210 260 270 280 290 300 310 fg0347 TVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVP 220 230 240 250 260 270 320 330 340 350 360 370 fg0347 NDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACL 280 290 300 310 320 330 380 390 400 410 420 430 fg0347 ETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ETAKSTSGGTPSSAPADLPAPFSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALP 340 350 360 370 380 390 440 450 460 470 fg0347 PASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY :::::::::::::::::::::::::::::::::: gi|114 PASPGPPPGLAAYTAKMAAANGSKKAERQKFSPY 400 410 420 >>gi|12230429|sp|P57723.1|PCBP4_HUMAN RecName: Full=Poly (403 aa) initn: 2611 init1: 2611 opt: 2611 Z-score: 2620.9 bits: 494.1 E(): 3.2e-137 Smith-Waterman score: 2611; 100.000% identity (100.000% similar) in 403 aa overlap (68-470:1-403) 40 50 60 70 80 90 fg0347 SRVSPPLDRAGQVAARTHSQVAVAPASPDRMSGSDGGLEEEPELSITLTLRMLMHGKEVG :::::::::::::::::::::::::::::: gi|122 MSGSDGGLEEEPELSITLTLRMLMHGKEVG 10 20 30 100 110 120 130 140 150 fg0347 SIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 SIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAA 40 50 60 70 80 90 160 170 180 190 200 210 fg0347 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV 100 110 120 130 140 150 220 230 240 250 260 270 fg0347 TVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 TVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP 160 170 180 190 200 210 280 290 300 310 320 330 fg0347 AEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 AEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 220 230 240 250 260 270 340 350 360 370 380 390 fg0347 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAP 280 290 300 310 320 330 400 410 420 430 440 450 fg0347 FSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 FSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAAN 340 350 360 370 380 390 460 470 fg0347 GSKKAERQKFSPY ::::::::::::: gi|122 GSKKAERQKFSPY 400 >>gi|109039278|ref|XP_001094397.1| PREDICTED: poly(rC) b (403 aa) initn: 2600 init1: 2600 opt: 2600 Z-score: 2609.9 bits: 492.0 E(): 1.3e-136 Smith-Waterman score: 2600; 99.504% identity (100.000% similar) in 403 aa overlap (68-470:1-403) 40 50 60 70 80 90 fg0347 SRVSPPLDRAGQVAARTHSQVAVAPASPDRMSGSDGGLEEEPELSITLTLRMLMHGKEVG :::::::::::::::::::::::::::::: gi|109 MSGSDGGLEEEPELSITLTLRMLMHGKEVG 10 20 30 100 110 120 130 140 150 fg0347 SIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 SIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAA 40 50 60 70 80 90 160 170 180 190 200 210 fg0347 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV 100 110 120 130 140 150 220 230 240 250 260 270 fg0347 TVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP 160 170 180 190 200 210 280 290 300 310 320 330 fg0347 AEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 220 230 240 250 260 270 340 350 360 370 380 390 fg0347 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAP ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|109 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSAPADLPAP 280 290 300 310 320 330 400 410 420 430 440 450 fg0347 FSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAAN ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|109 FSPPLTALPTAPPGLLGTPYAISLSNFIGLKPVPFLALPPASPGPPPGLAAYTAKMAAAN 340 350 360 370 380 390 460 470 fg0347 GSKKAERQKFSPY ::::::::::::: gi|109 GSKKAERQKFSPY 400 >>gi|73985377|ref|XP_849987.1| PREDICTED: similar to Pol (403 aa) initn: 2570 init1: 2570 opt: 2570 Z-score: 2579.8 bits: 486.5 E(): 6.2e-135 Smith-Waterman score: 2570; 98.015% identity (100.000% similar) in 403 aa overlap (68-470:1-403) 40 50 60 70 80 90 fg0347 SRVSPPLDRAGQVAARTHSQVAVAPASPDRMSGSDGGLEEEPELSITLTLRMLMHGKEVG :::::.:::::::::::::::::::::::: gi|739 MSGSDAGLEEEPELSITLTLRMLMHGKEVG 10 20 30 100 110 120 130 140 150 fg0347 SIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 SIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAA 40 50 60 70 80 90 160 170 180 190 200 210 fg0347 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV 100 110 120 130 140 150 220 230 240 250 260 270 fg0347 TVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 TVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP 160 170 180 190 200 210 280 290 300 310 320 330 fg0347 AEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM ::::::::::.::::::.::.:::::::.::::::::::::::::::::::::::::::: gi|739 AEVTKLQQLSGHAVPFASPSMVPGLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 220 230 240 250 260 270 340 350 360 370 380 390 fg0347 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAP ::::::::::::::::::::::::::::::::::::::::::::::::::.:::.::::: gi|739 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSAPTDLPAP 280 290 300 310 320 330 400 410 420 430 440 450 fg0347 FSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAAN ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|739 FSPPLTALPTAPPGLLGTPYAISLSNFIGLKPVPFLALPPASPGPPPGLAAYTAKMAAAN 340 350 360 370 380 390 460 470 fg0347 GSKKAERQKFSPY ::::::::::::: gi|739 GSKKAERQKFSPY 400 >>gi|114587168|ref|XP_001171145.1| PREDICTED: poly(rC) b (433 aa) initn: 2560 init1: 2560 opt: 2560 Z-score: 2569.4 bits: 484.6 E(): 2.4e-134 Smith-Waterman score: 2560; 100.000% identity (100.000% similar) in 396 aa overlap (68-463:1-396) 40 50 60 70 80 90 fg0347 SRVSPPLDRAGQVAARTHSQVAVAPASPDRMSGSDGGLEEEPELSITLTLRMLMHGKEVG :::::::::::::::::::::::::::::: gi|114 MSGSDGGLEEEPELSITLTLRMLMHGKEVG 10 20 30 100 110 120 130 140 150 fg0347 SIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAA 40 50 60 70 80 90 160 170 180 190 200 210 fg0347 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV 100 110 120 130 140 150 220 230 240 250 260 270 fg0347 TVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP 160 170 180 190 200 210 280 290 300 310 320 330 fg0347 AEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 220 230 240 250 260 270 340 350 360 370 380 390 fg0347 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAP 280 290 300 310 320 330 400 410 420 430 440 450 fg0347 FSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAAN 340 350 360 370 380 390 460 470 fg0347 GSKKAERQKFSPY :::::: gi|114 GSKKAEGHPKEGALPGSWGSGMGQGPSSQQQTLCTVFSIPVFE 400 410 420 430 >>gi|62654235|ref|XP_343469.2| PREDICTED: similar to Pol (403 aa) initn: 2557 init1: 2557 opt: 2557 Z-score: 2566.8 bits: 484.1 E(): 3.3e-134 Smith-Waterman score: 2557; 97.767% identity (100.000% similar) in 403 aa overlap (68-470:1-403) 40 50 60 70 80 90 fg0347 SRVSPPLDRAGQVAARTHSQVAVAPASPDRMSGSDGGLEEEPELSITLTLRMLMHGKEVG ::.::.:::::::::::::::::::::::: gi|626 MSSSDAGLEEEPELSITLTLRMLMHGKEVG 10 20 30 100 110 120 130 140 150 fg0347 SIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|626 SIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAA 40 50 60 70 80 90 160 170 180 190 200 210 fg0347 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|626 PANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV 100 110 120 130 140 150 220 230 240 250 260 270 fg0347 TVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|626 TVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP 160 170 180 190 200 210 280 290 300 310 320 330 fg0347 AEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM ::::::::::.::::::.:::::::::.:::::::::::::::::::::::::::::::: gi|626 AEVTKLQQLSGHAVPFASPSVVPGLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 220 230 240 250 260 270 340 350 360 370 380 390 fg0347 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAP ::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::.: gi|626 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSAPADLPTP 280 290 300 310 320 330 400 410 420 430 440 450 fg0347 FSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAAN ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|626 FSPPLTALPTAPPGLLGTPYAISLSNFIGLKPVPFLALPPASPGPPPGLAAYTAKMAAAN 340 350 360 370 380 390 460 470 fg0347 GSKKAERQKFSPY ::::::::::::: gi|626 GSKKAERQKFSPY 400 >>gi|119390858|sp|Q0VCU0.1|PCBP4_BOVIN RecName: Full=Pol (403 aa) initn: 2557 init1: 2557 opt: 2557 Z-score: 2566.8 bits: 484.1 E(): 3.3e-134 Smith-Waterman score: 2557; 97.519% identity (100.000% similar) in 403 aa overlap (68-470:1-403) 40 50 60 70 80 90 fg0347 SRVSPPLDRAGQVAARTHSQVAVAPASPDRMSGSDGGLEEEPELSITLTLRMLMHGKEVG :::::.:::::::::::::::::::::::: gi|119 MSGSDAGLEEEPELSITLTLRMLMHGKEVG 10 20 30 100 110 120 130 140 150 fg0347 SIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAA 40 50 60 70 80 90 160 170 180 190 200 210 fg0347 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV 100 110 120 130 140 150 220 230 240 250 260 270 fg0347 TVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::.::: gi|119 TVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSTNQGFSVQGQYGTVTP 160 170 180 190 200 210 280 290 300 310 320 330 fg0347 AEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM ::::::::::.::::::.::.::::::.:::::::::::::::::::::::::::::::: gi|119 AEVTKLQQLSGHAVPFASPSMVPGLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 220 230 240 250 260 270 340 350 360 370 380 390 fg0347 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAP ::::::::::::::::::::::::::::::::::::::::::::::::::.:::.::::: gi|119 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSAPTDLPAP 280 290 300 310 320 330 400 410 420 430 440 450 fg0347 FSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAAN ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|119 FSPPLTALPTAPPGLLGTPYAISLSNFIGLKPVPFLALPPASPGPPPGLAAYTAKMAAAN 340 350 360 370 380 390 460 470 fg0347 GSKKAERQKFSPY ::::::::::::: gi|119 GSKKAERQKFSPY 400 >>gi|109039296|ref|XP_001093140.1| PREDICTED: poly(rC) b (433 aa) initn: 2549 init1: 2549 opt: 2549 Z-score: 2558.4 bits: 482.6 E(): 9.7e-134 Smith-Waterman score: 2549; 99.495% identity (100.000% similar) in 396 aa overlap (68-463:1-396) 40 50 60 70 80 90 fg0347 SRVSPPLDRAGQVAARTHSQVAVAPASPDRMSGSDGGLEEEPELSITLTLRMLMHGKEVG :::::::::::::::::::::::::::::: gi|109 MSGSDGGLEEEPELSITLTLRMLMHGKEVG 10 20 30 100 110 120 130 140 150 fg0347 SIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 SIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAA 40 50 60 70 80 90 160 170 180 190 200 210 fg0347 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV 100 110 120 130 140 150 220 230 240 250 260 270 fg0347 TVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP 160 170 180 190 200 210 280 290 300 310 320 330 fg0347 AEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 220 230 240 250 260 270 340 350 360 370 380 390 fg0347 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAP ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|109 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSAPADLPAP 280 290 300 310 320 330 400 410 420 430 440 450 fg0347 FSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAAN ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|109 FSPPLTALPTAPPGLLGTPYAISLSNFIGLKPVPFLALPPASPGPPPGLAAYTAKMAAAN 340 350 360 370 380 390 460 470 fg0347 GSKKAERQKFSPY :::::: gi|109 GSKKAEGHPKEGALPGSWGSGMGQGPSSQQQTLCTVFSIPVFE 400 410 420 430 >>gi|14715061|gb|AAH10694.1| Poly(rC) binding protein 4 (403 aa) initn: 2548 init1: 2548 opt: 2548 Z-score: 2557.8 bits: 482.4 E(): 1e-133 Smith-Waterman score: 2548; 97.519% identity (99.752% similar) in 403 aa overlap (68-470:1-403) 40 50 60 70 80 90 fg0347 SRVSPPLDRAGQVAARTHSQVAVAPASPDRMSGSDGGLEEEPELSITLTLRMLMHGKEVG ::.::.:::: ::::::::::::::::::: gi|147 MSSSDAGLEEGPELSITLTLRMLMHGKEVG 10 20 30 100 110 120 130 140 150 fg0347 SIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|147 SIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAA 40 50 60 70 80 90 160 170 180 190 200 210 fg0347 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|147 PANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV 100 110 120 130 140 150 220 230 240 250 260 270 fg0347 TVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|147 TVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP 160 170 180 190 200 210 280 290 300 310 320 330 fg0347 AEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM ::::::::::.::::::.:::::::::.:::::::::::::::::::::::::::::::: gi|147 AEVTKLQQLSGHAVPFASPSVVPGLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 220 230 240 250 260 270 340 350 360 370 380 390 fg0347 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAP ::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::.: gi|147 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSAPADLPTP 280 290 300 310 320 330 400 410 420 430 440 450 fg0347 FSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAAN ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|147 FSPPLTALPTAPPGLLGTPYAISLSNFIGLKPVPFLALPPASPGPPPGLAAYTAKMAAAN 340 350 360 370 380 390 460 470 fg0347 GSKKAERQKFSPY ::::::::::::: gi|147 GSKKAERQKFSPY 400 >>gi|12230430|sp|P57724.1|PCBP4_MOUSE RecName: Full=Poly (403 aa) initn: 2546 init1: 2546 opt: 2546 Z-score: 2555.8 bits: 482.0 E(): 1.3e-133 Smith-Waterman score: 2546; 97.270% identity (99.752% similar) in 403 aa overlap (68-470:1-403) 40 50 60 70 80 90 fg0347 SRVSPPLDRAGQVAARTHSQVAVAPASPDRMSGSDGGLEEEPELSITLTLRMLMHGKEVG ::.::.:::: ::::::::::::::::::: gi|122 MSSSDAGLEEGPELSITLTLRMLMHGKEVG 10 20 30 100 110 120 130 140 150 fg0347 SIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 SIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMIAFKLDEDLCAA 40 50 60 70 80 90 160 170 180 190 200 210 fg0347 PANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 PANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAV 100 110 120 130 140 150 220 230 240 250 260 270 fg0347 TVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 TVSGVPDAIILCVRQICAVILESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTP 160 170 180 190 200 210 280 290 300 310 320 330 fg0347 AEVTKLQQLSSHAVPFATPSVVPGLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM ::::::::::.::::::.::::::.::.:::::::::::::::::::::::::::::::: gi|122 AEVTKLQQLSGHAVPFASPSVVPGMDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 220 230 240 250 260 270 340 350 360 370 380 390 fg0347 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPSSAPADLPAP ::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::.: gi|122 SGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACLETAKSTSGGTPGSAPADLPTP 280 290 300 310 320 330 400 410 420 430 440 450 fg0347 FSPPLTALPTAPPGLLGTPYAISLSNFIGLKPMPFLALPPASPGPPPGLAAYTAKMAAAN ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|122 FSPPLTALPTAPPGLLGTPYAISLSNFIGLKPVPFLALPPASPGPPPGLAAYTAKMAAAN 340 350 360 370 380 390 460 470 fg0347 GSKKAERQKFSPY ::::::::::::: gi|122 GSKKAERQKFSPY 400 470 residues in 1 query sequences 3071326396 residues in 8985982 library sequences Tcomplib [34.26] (8 proc) start: Thu Jun 18 07:57:41 2009 done: Thu Jun 18 08:00:47 2009 Total Scan time: 1127.480 Total Display time: 0.120 Function used was FASTA [version 34.26.5 April 26, 2007]