hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-08004894/chunk_1/iprscan-20090618-08004894.nocrc
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Query sequence: fg03474
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00013.19.ls KH domain                                      224.3    2.4e-64   3
PF00013.19.fs KH domain                                      218.8    1.1e-62   3
PF07650.7.fs KH domain                                       22.5    1.5e-05   3
PF07650.7.ls KH domain                                       11.4     0.0048   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00013.19.fs   1/3      86   146 ..     1    73 []    67.6  2.4e-18
PF00013.19.ls   1/3      86   146 ..     1    73 []    69.5    1e-17
PF07650.7.ls   1/2      86   134 ..     1    78 []    10.2   0.0068
PF00013.19.fs   2/3     170   233 ..     1    73 []    72.6  9.5e-20
PF00013.19.ls   2/3     170   233 ..     1    73 []    74.5  3.2e-19
PF00013.19.ls   3/3     310   372 ..     1    73 []    80.4  5.1e-21
PF00013.19.fs   3/3     310   372 ..     1    73 []    78.6    2e-21

Alignments of top-scoring domains:
PF00013.19.fs: domain 1 of 3, from 86 to 146: score 67.6, E = 2.4e-18
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      t+r+l + + vG+iIGk+G+t+k+Ire++ a+I+i++          
     fg03474    86    TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGS-------- 124  

                   plngsgertvtIsGtpeavekAkkli<-*
                       ++er+ tI+G+++av +A  +i   
     fg03474   125 ----CPERITTITGSTAAVFHAVSMI    146  

PF00013.19.ls: domain 1 of 3, from 86 to 146: score 69.5, E = 1e-17
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      t+r+l + + vG+iIGk+G+t+k+Ire++ a+I+i++          
     fg03474    86    TLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGS-------- 124  

                   plngsgertvtIsGtpeavekAkkli<-*
                       ++er+ tI+G+++av +A  +i   
     fg03474   125 ----CPERITTITGSTAAVFHAVSMI    146  

PF07650.7.ls: domain 1 of 2, from 86 to 134: score 10.2, E = 0.0068
                   *->avivvirtsqpGivIGKgGsnIkklgkelrklltgkkvqieviEySd
                        +   +    G +IGK+G+++k+++++   +       i + E   
     fg03474    86    TLRMLMHGKEVGSIIGKKGETVKRIREQSSAR-------ITISE--- 122  

                   eeFgkkVfLeLwVKVkknWvknpellaqLga<-*
                                         pe   ++     
     fg03474   123 -------------------GSCPERITTITG    134  

PF00013.19.fs: domain 2 of 3, from 170 to 233: score 72.6, E = 9.5e-20
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      t+r++ip+s++G++IGk G +IkeIre tGa++++ +d         
     fg03474   170    TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDL-------L 209  

                   plngsgertvtIsGtpeavekAkkli<-*
                   p  +s+er vt+sG p+a+  + ++i   
     fg03474   210 P--NSTERAVTVSGVPDAIILCVRQI    233  

PF00013.19.ls: domain 2 of 3, from 170 to 233: score 74.5, E = 3.2e-19
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      t+r++ip+s++G++IGk G +IkeIre tGa++++ +d         
     fg03474   170    TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDL-------L 209  

                   plngsgertvtIsGtpeavekAkkli<-*
                   p  +s+er vt+sG p+a+  + ++i   
     fg03474   210 P--NSTERAVTVSGVPDAIILCVRQI    233  

PF00013.19.ls: domain 3 of 3, from 310 to 372: score 80.4, E = 5.1e-21
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      ++++l+p++++G++IG++Gs+I eIr+ +Ga+I+i ++         
     fg03474   310    SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQA-------- 348  

                   plngsgertvtIsGtpeavekAkkli<-*
                      g ger vtI+G+p +++ A++li   
     fg03474   349 E--GAGERHVTITGSPVSIALAQYLI    372  

PF00013.19.fs: domain 3 of 3, from 310 to 372: score 78.6, E = 2e-21
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      ++++l+p++++G++IG++Gs+I eIr+ +Ga+I+i ++         
     fg03474   310    SQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQA-------- 348  

                   plngsgertvtIsGtpeavekAkkli<-*
                      g ger vtI+G+p +++ A++li   
     fg03474   349 E--GAGERHVTITGSPVSIALAQYLI    372  

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