hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-07454650/chunk_1/iprscan-20080809-07454650.nocrc
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Query sequence: fg03490
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00939.9.fs  Sodium:sulfate symporter transmembrane    144.8    2.2e-40   1
PF00939.9.ls  Sodium:sulfate symporter transmembrane    -29.8    1.4e-11   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00939.9.ls    1/1      14   479 ..     1   589 []   -29.8  1.4e-11
PF00939.9.fs    1/1     174   479 ..   274   589 .]   144.8  2.2e-40

Alignments of top-scoring domains:
PF00939.9.ls: domain 1 of 1, from 14 to 479: score -29.8, E = 1.4e-11
                   *->kkliwkLlallavlliIwflPaPdGLsskAWhlfAIFiatIVGlIle
                      + ++ ++l               +GL +  W                
     fg03490    14    SGELDTRL-------------GGAGLAEVPW---------------- 31   

                   PvPlgviAlialslsavltgtlsfeneelaqpGFkatakalswaLSGFsn
                                 + + +++l+                     +SG ++
     fg03490    32 --------------C-ICSPWLL---------------------ASGSHS 45   

                   tttWLvFlAFfiaaGfekTGLGkRIAlvlvkalGkrTarLgLGYalVfsd
                      W        + G++ +   +  A +++ ++   +        l    
     fg03490    46 AEAW-------GGPGMTRWSFSRHLAHHFLFLIVRWP--------LSQQN 80   

                   LlLAPaiPSnRsARaGGIifPvIksLpvSQASSNVEEGlfgStpekgEPS
                   L  +P+i+                 +            +++ +  k+ PS
     fg03490    81 LNGVPSITNP---------------IKT----------ANQHQGKKQHPS 105  

                   PQKEVTKLDNGQALPVTSASSEGdAHLSQK....serkiGayLMwtvyqs
                     K           P     S     L  K ++++   i  +L++++ +s
     fg03490   106 QEK-----------PQVLTPSPRKQKLNRKyrshHDQMICKCLSLSISYS 144  

                   tsITSamFLTAmApNlLalglankLFPilGveisWlsWflAalppGiilL
                   + I++  +  ++   l+ l+  n+ +P++ ++++++ Wfl+ +p ++i+L
     fg03490   145 ATIGGLTTIIGTSTSLIFLEHFNNQYPAA-EVVNFGTWFLFSFPISLIML 193  

                   llvPLllYvLyPPeiks.....spFGIGEKmQEQQQdakriAkteLkeMG
                   ++ +++  +L+++ +++++ + s+     K     Q   + +++e +++G
     fg03490   194 VVSWFWMHWLFLGCNFKetcslSK----KKKTKREQLSEKRIQEEYEKLG 239  

                   PmskrEkallglflLlLlLWiFggPGFFLGWGNLAslgaKGESmidAttV
                     s +E      f L  +LW++++PGF  GW    +   KG     ++tV
     fg03490   240 DISYPEMVTGFFFILMTVLWFTREPGFVPGWDSFFEK--KGYRT--DATV 285  

                   AlivlvlmlllrikFP..GLTQDPENPGKLKAPLGivdWkKDivknktAW
                     + + l++l++ k P  G   D EN         i++Wk D  + +++W
     fg03490   286 SVFLGFLLFLIPAKKPcfGKKNDGENQEHSLGTEPIITWK-D-FQKTMPW 333  

                   NTLiwfGaLIaLAggLnksGfieWlGnalvtslslaglsplmafiiLvll
                   +++i+ G+++aLA+g+++sG+++W+Gn + +++s     p  a+  L  +
     fg03490   334 EIVILVGGGYALASGSKSSGLSTWIGNQMLSLSS----LPPWAVTLLACI 379  

                   yylsHYfFASatAhiaAmlPiflaVaqalpGGaPplllaLlLafasslgG
                   ++++ ++F S+ A+i+++lPi+ +++ +l   ++pl++ ++++  +s++ 
     fg03490   380 LVSIVTEFVSNPATITIFLPILCSLSETL--HINPLYTLIPVTMCISFA- 426  

                   flTPYGtGPapiyfGsGYvkvkdwWrlGfilsIigliiwLlvGalWWkpL
                    ++P+G +P++i+f+ G  ++kd+ ++G  +++igl+i  +++++W+  L
     fg03490   427 VMLPVGNPPNAIVFSYGHCQIKDMVKAGLGVNVIGLVIVMVAINTWGVSL 476  

                   gll<-*
                   + l   
     fg03490   477 FHL    479  

PF00939.9.fs: domain 1 of 1, from 174 to 479: score 144.8, E = 2.2e-40
                   *->veisWlsWflAalppGiilLllvPLllYvLyPPeiks.....spFGI
                      ++++++ Wfl+ +p ++i+L++ +++  +L+++ +++++ + s+   
     fg03490   174    EVVNFGTWFLFSFPISLIMLVVSWFWMHWLFLGCNFKetcslSK--- 217  

                   GEKmQEQQQdakriAkteLkeMGPmskrEkallglflLlLlLWiFggPGF
                     K     Q   + +++e +++G  s +E      f L  +LW++++PGF
     fg03490   218 -KKKTKREQLSEKRIQEEYEKLGDISYPEMVTGFFFILMTVLWFTREPGF 266  

                   FLGWGNLAslgaKGESmidAttVAlivlvlmlllrikFP..GLTQDPENP
                     GW    +   KG     ++tV  + + l++l++ k P  G   D EN 
     fg03490   267 VPGWDSFFEK--KGYRT--DATVSVFLGFLLFLIPAKKPcfGKKNDGENQ 312  

                   GKLKAPLGivdWkKDivknktAWNTLiwfGaLIaLAggLnksGfieWlGn
                           i++Wk D  + +++W+++i+ G+++aLA+g+++sG+++W+Gn
     fg03490   313 EHSLGTEPIITWK-D-FQKTMPWEIVILVGGGYALASGSKSSGLSTWIGN 360  

                   alvtslslaglsplmafiiLvllyylsHYfFASatAhiaAmlPiflaVaq
                    + +++s     p  a+  L  +++++ ++F S+ A+i+++lPi+ +++ 
     fg03490   361 QMLSLSS----LPPWAVTLLACILVSIVTEFVSNPATITIFLPILCSLSE 406  

                   alpGGaPplllaLlLafasslgGflTPYGtGPapiyfGsGYvkvkdwWrl
                   +l   ++pl++ ++++  +s++  ++P+G +P++i+f+ G  ++kd+ ++
     fg03490   407 TL--HINPLYTLIPVTMCISFA-VMLPVGNPPNAIVFSYGHCQIKDMVKA 453  

                   GfilsIigliiwLlvGalWWkpLgll<-*
                   G  +++igl+i  +++++W+  L+ l   
     fg03490   454 GLGVNVIGLVIVMVAINTWGVSLFHL    479  

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