hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-08052379/chunk_1/iprscan-20080809-08052379.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fg03766 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00408 382.7 2.2e-110 9 SM00409 331.1 7.6e-95 9 SM00060 246.1 2.9e-69 6 SM00406 29.4 0.00048 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00408 1/9 48 120 .. 1 56 [] 5.5 1.5 SM00409 1/9 141 229 .. 1 58 [] 18.2 1.2 SM00409 2/9 242 322 .. 1 58 [] 49.1 5.8e-10 SM00408 2/9 248 311 .. 1 56 [] 59.3 4.8e-13 SM00406 1/3 252 306 .. 1 76 [] 16.6 0.064 SM00409 3/9 331 414 .. 1 58 [] 40.0 3.2e-07 SM00408 3/9 337 403 .. 1 56 [] 41.3 1.3e-07 SM00409 4/9 424 513 .. 1 58 [] 38.7 7.8e-07 SM00408 4/9 430 502 .. 1 56 [] 46.5 3.5e-09 SM00409 5/9 521 605 .. 1 58 [] 32.4 6.3e-05 SM00408 5/9 527 593 .. 1 56 [] 41.5 1.1e-07 SM00409 6/9 613 698 .. 1 58 [] 37.9 1.4e-06 SM00408 6/9 619 687 .. 1 56 [] 54.5 1.4e-11 SM00409 7/9 707 796 .. 1 58 [] 43.3 3.3e-08 SM00408 7/9 713 784 .. 1 56 [] 68.8 6.8e-16 SM00406 2/3 717 779 .. 1 76 [] 4.8 0.96 SM00409 8/9 805 894 .. 1 58 [] 40.3 2.7e-07 SM00408 8/9 811 883 .. 1 56 [] 18.8 0.061 SM00060 1/6 896 980 .. 1 69 [] 45.0 9.7e-09 SM00060 2/6 996 1084 .. 1 69 [] 53.8 2.2e-11 SM00060 3/6 1099 1185 .. 1 69 [] 40.9 1.7e-07 SM00060 4/6 1200 1281 .. 1 69 [] 46.5 3.6e-09 SM00409 9/9 1303 1388 .. 1 58 [] 31.3 0.00014 SM00408 9/9 1312 1377 .. 1 56 [] 46.4 3.7e-09 SM00406 3/3 1313 1372 .. 1 76 [] 8.0 0.46 SM00060 5/6 1391 1471 .. 1 69 [] 55.0 9.5e-12 SM00060 6/6 1488 1568 .. 1 69 [] 4.8 59 Alignments of top-scoring domains: SM00408: domain 1 of 9, from 48 to 120: score 5.5, E = 1.5 *->leGqsVtLtCpasgdpvpnItWlk..gkplp.........sgstLti + + +Cpa+g p + +W+ +g+++ + ++ ++ + ++tL+i fg03766 48 ASTTGTLVPCPAAGIPPVTLRWYLatGEEIYdvpgirhvhPNGTLQI 94 knv......sleDsGlYtCvArNsvg<-* ++++++ ++l ++ +Y C+A+N+ g fg03766 95 FPFppssfsTLIHDNTYYCTAENPSG 120 SM00409: domain 1 of 9, from 141 to 229: score 18.2, E = 1.2 *->pp.vtvkeGesvtLtC.as........titWy............... +++ ++G ++++C ++++ + ++W +++ + ++++ + fg03766 141 VEdQKTMRGNVAVFKCiIPssveayitVVSWEkdtvslvsgsrflit 187 ....LtI.nvtpeDsesgGtYtCaat....sgsasseqgttLtVl<-* +++ L I++v+ eD +Y+C +++ ++ + +s ++++L V+ fg03766 188 stgaLYIkDVQNEDG--LYNYRCITRhrytGETRQS-NSARLFVS 229 SM00409: domain 2 of 9, from 242 to 322: score 49.1, E = 5.8e-10 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++ +++G++v+L+C+a +++ + ++W++++ + +++ +++ ++ fg03766 242 FEhRKAMAGQRVELPCkALghpepDYRWLkdnmplelsgrfqktvtg 288 LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* L I+n++p+Ds G Y+C++++++g+a+ +L+V+ fg03766 289 LLIeNIRPSDS---GSYVCEVSnrYGTAKV--IGRLYVK 322 SM00408: domain 2 of 9, from 248 to 311: score 59.3, E = 4.8e-13 *->leGqsVtLtCpasgdpvpnItWlk.gkplp.......sgstLtiknv Gq V+L+C+a g p+p+ +Wlk++ pl+ +++ +++ L i+n+ fg03766 248 MAGQRVELPCKALGHPEPDYRWLKdNMPLElsgrfqkTVTGLLIENI 294 sleDsGlYtCvArNsvg<-* +++DsG Y+C+++N+ g fg03766 295 RPSDSGSYVCEVSNRYG 311 SM00406: domain 1 of 3, from 252 to 306: score 16.6, E = 0.064 *->svtLsCkaSgftf.yvsWvrqpPsstgkgkglewlgysykgRvtisk v+L+Cka g+ + W++ +le ++gR++ + fg03766 252 RVELPCKALGHPEpDYRWLKDNM-------PLE-----LSGRFQKTV 286 dtltraskndvsLtisnLrpeDtgtYyCar<-* L i n rp+D+g Y C++ fg03766 287 TG----------LLIENIRPSDSGSYVCEV 306 SM00409: domain 3 of 9, from 331 to 414: score 40.0, E = 3.2e-07 *->pp.vtvkeGesvtLtC.as.....titWy.................. p++v ++G+ v+L+C+++++ + +++Wy+++ +++++ + ++ + fg03766 331 PRkVKSSVGSQVSLSCsVTgtedqELSWYrngeilnpgknvritgin 377 ...LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + +L++++ ++D G Y+C +++++ sa+ +++ + fg03766 378 henLIMdHMVKSDG---GAYQCFVRkdKLSAQD--YVQVVLE 414 SM00408: domain 3 of 9, from 337 to 403: score 41.3, E = 1.3e-07 *->leGqsVtLtCpasgdpvpnItWlk.gkplp..........sgstLti G +V+L C ++g ++ + +W+++g+ l+++++ + ++ + L fg03766 337 SVGSQVSLSCSVTGTEDQELSWYRnGEILNpgknvritgiNHENLIM 383 knvsleDsGlYtCvArNsvg<-* ++ ++D G Y+C++r + fg03766 384 DHMVKSDGGAYQCFVRKDKL 403 SM00409: domain 4 of 9, from 424 to 513: score 38.7, E = 7.8e-07 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++ +v++ e+v+L C++++++ +titW+ ++++ ++++++ ++ fg03766 424 FSeKVVSPAEPVSLMCnVKgtplpTITWTldddpilkggshrisqmi 470 .........LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<- ++ ++ + L+I++ ++ D G+Y+C+a++++g++ +++ V+ fg03766 471 tsegnvvsyLNIsSSQVRDG---GVYRCTANnsAGVVLY--QARINVR 513 * fg03766 - - SM00408: domain 4 of 9, from 430 to 502: score 46.5, E = 3.5e-09 *->leGqsVtLtCpasgdpvpnItWlk.gkplp................s + ++V+L C + g p p+ItW+ ++ p+ ++++++ ++ +++++ fg03766 430 SPAEPVSLMCNVKGTPLPTITWTLdDDPILkggshrisqmitsegnV 476 gstLtiknvsleDsGlYtCvArNsvg<-* s+L+i++ ++ D G+Y+C+A Ns+g fg03766 477 VSYLNISSSQVRDGGVYRCTANNSAG 502 SM00409: domain 5 of 9, from 521 to 605: score 32.4, E = 6.3e-05 *->pp.vtvkeGesvtLtC.as.....titWy.................. +++t+ +G + ++C++ + + +i+Wy++++ + ++++ ++ fg03766 521 MKnITAIAGRDTYIHCrVIgypyySIKWYknsnllpfnhrqvafenn 567 ..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++L +++v++e +G+YtC + +s q++++tV+ fg03766 568 gtLKLsDVQKEVD--EGEYTCNVLvqPQLSTS-QSVHVTVK 605 SM00408: domain 5 of 9, from 527 to 593: score 41.5, E = 1.1e-07 *->leGqsVtLtCpasgdpvpnItWlk.gkplp.........sgstLtik + G++ + C++ g+p ++I+W+k++ lp ++++ ++++tL+++ fg03766 527 IAGRDTYIHCRVIGYPYYSIKWYKnSNLLPfnhrqvafeNNGTLKLS 573 nvs.leDsGlYtCvArNsvg<-* +v+++ D+G+YtC + fg03766 574 DVQkEVDEGEYTCNVLVQPQ 593 SM00409: domain 6 of 9, from 613 to 698: score 37.9, E = 1.4e-06 *->pp.vtvkeGesvtLtC.as......titWy................. + + G++v ++C + +++ + titW +++++ +++ + + ++ fg03766 613 FEfPRFSIGQRVFIPCvVVsgdlpiTITWQkdgrpipgslgvtidni 659 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + +++L+I+n+++ + G+YtC a++ + ++ +L+V+ fg03766 660 dftssLRIsNLSLMHN---GNYTCIARneAAAVEH--QSQLIVR 698 SM00408: domain 6 of 9, from 619 to 687: score 54.5, E = 1.4e-11 *->leGqsVtLtCp.asgdpvpnItWlk.gkplp...........sgstL +Gq V ++C +sgd +ItW k+g p+p++ + + ++ + s+L fg03766 619 SIGQRVFIPCVvVSGDLPITITWQKdGRPIPgslgvtidnidFTSSL 665 tiknvsleDsGlYtCvArNsvg<-* +i+n sl + G+YtC+ArN++ fg03766 666 RISNLSLMHNGNYTCIARNEAA 687 SM00409: domain 7 of 9, from 707 to 796: score 43.3, E = 3.3e-08 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+++ + G v L+C+a++ + +ti W+ +++ + ++ ++ +++ fg03766 707 PRdQDGIYGKAVILNCsAEgypvpTIVWKfskgagvpqfqpialngr 753 ........LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* + ++++L I++v +eDs G Y C ++++ g + s ++ +LtV+ fg03766 754 iqvlsngsLLIkHVVEEDS---GYYLCKVSndVGADVS-KSMYLTVK 796 SM00408: domain 7 of 9, from 713 to 784: score 68.8, E = 6.8e-16 *->leGqsVtLtCpasgdpvpnItWlk..gkplp..............sg + G +V+L+C a+g+pvp+I W++++g +p+ ++ +++ + s+ fg03766 713 IYGKAVILNCSAEGYPVPTIVWKFskGAGVPqfqpialngriqvlSN 759 stLtiknvsleDsGlYtCvArNsvg<-* ++L ik+v +eDsG+Y C+++N vg fg03766 760 GSLLIKHVVEEDSGYYLCKVSNDVG 784 SM00406: domain 2 of 3, from 717 to 779: score 4.8, E = 0.96 *->svtLsCkaSgftf.yvsWvrqpPsstgkgkglewlgysykgRvtisk v L C+a g+ +++ W + ++ + + + gR+++ fg03766 717 AVILNCSAEGYPVpTIVWKFSK-----GAGVPQFQPIALNGRIQVLS 758 dtltraskndvsLtisnLrpeDtgtYyCar<-* + sL i+ + eD+g+Y C + fg03766 759 NG---------SLLIKHVVEEDSGYYLCKV 779 SM00409: domain 8 of 9, from 805 to 894: score 40.3, E = 2.7e-07 *->pp.vtvkeGesvtLtC.as.....titWy.................. p ++++ G+ +++C+a++ ++ ++W + ++ ++ + +++ fg03766 805 PNtTLATQGQKKEMSCtAHgekpiIVRWEkedriinpemarylvstk 851 .........LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<- + ++L+I + +eDs G + C a +++g++ + ++LtV+ fg03766 852 evgeevistLQIlPTVREDS---GFFSCHAInsYGEDRG--IIQLTVQ 894 * fg03766 - - SM00408: domain 8 of 9, from 811 to 883: score 18.8, E = 0.061 *->leGqsVtLtCpasgdpvpnItWlk.gkplp................s +Gq ++ C a g ++W k++ ++++ + ++++ +++ fg03766 811 TQGQKKEMSCTAHGEKPIIVRWEKeDRIINpemarylvstkevgeeV 857 gstLtiknvsleDsGlYtCvArNsvg<-* stL+i + +eDsG +C A Ns g fg03766 858 ISTLQILPTVREDSGFFSCHAINSYG 883 SM00060: domain 1 of 6, from 896 to 980: score 45.0, E = 9.7e-09 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... P+ P+ ++++dv ++ ++tl+W+ +++++i+gY + fg03766 896 PPDPPE---IEIKDVKAR------TITLRWTMGfdgnspITGYDiec 933 ......................ytltgLkPgaepwteYefrVrAvngnda +++++++++ +++++++++ +++t+ + +P ++Y++r +A+n+ fg03766 934 knksdswdsaqrtkdvspqlnsATIIDIHPS----STYSIRMYAKNR--I 977 Geg<-* G + fg03766 978 GKS 980 SM00060: domain 2 of 6, from 996 to 1084: score 53.8, E = 2.2e-11 *->PgpPsnptelrvtdvtststsdltsvtlsWepP............iv gpP+ +++++++s s++++W++P+++ ++ ++ + fg03766 996 DGPPQE---VHLEPISSQ------SIRVTWKAPkkhlqngiirgyQI 1033 gYr.......................ytltgLkPgaepwteYefrVrAvn gYr+ +++++ + + ++++++++++ytl++L t+Y V+A n fg03766 1034 GYReystggnfqfniisvdtsgdsevYTLDNLNKF----TQYGLVVQACN 1079 gndaGeg<-* + aG g fg03766 1080 R--AGTG 1084 SM00060: domain 3 of 6, from 1099 to 1185: score 40.9, E = 1.7e-07 *->PgpPsnptelrvtdvtststsdltsvtlsWepP............iv P+ P+ + +++ ++++ s+++sW+ +++ ++ + +v fg03766 1099 PSYPPEN--VQAIATSPE------SISISWSTLskealngilqgfRV 1137 gYr....................ytltgLkPgaepwteYefrVrAvngnd Y+ + +++ ++ ++ ++++++ l+gL+ + t+Y+++V A+++ fg03766 1138 IYWanlmdgelgeiknitttqpsLELDGLEKY----TNYSIQVLAFTR-- 1181 aGeg<-* aG g fg03766 1182 AGDG 1185 SM00060: domain 4 of 6, from 1200 to 1281: score 46.5, E = 3.6e-09 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... PgpP + +++ + +++ v +sW pP + ++ i Y++ fg03766 1200 PGPPAG---VKAAAASAS------MVFVSWLPPlklngiIRKYTvfc 1237 ...................ytltgLkPgaepwteYefrVrAvngndaGeg + + +++ ++ + ++++ +y++++L+ + +Y+++V+Av++ aG+g fg03766 1238 shpyptvisefeaspdsfsYRIPNLSRN----RQYSVWVVAVTS--AGRG 1281 <-* fg03766 - - SM00409: domain 9 of 9, from 1303 to 1388: score 31.3, E = 0.00014 *->pp.vtvkeGesvtLtC.as.....titWy.................. +++vt +++L+C+a +++++ ++W+++++++++ + +++++ fg03766 1303 SGtVTTPWMKDIVLPCkAVgdpspAVKWMkdsngtpslvtidgrrsi 1349 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++++++I+ v++eDs G Y C a++++gs++ +L+V+ fg03766 1350 fsngsFIIrTVKAEDS---GYYSCIANnnWGSDEI--ILNLQVQ 1388 SM00408: domain 9 of 9, from 1312 to 1377: score 46.4, E = 3.7e-09 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL +++L+C+a gdp p ++W k++ p+ + +++++ s+++ fg03766 1312 ---KDIVLPCKAVGDPSPAVKWMKdSNGTPslvtidgrrsifSNGSF 1355 tiknvsleDsGlYtCvArNsvg<-* i+ v+ eDsG+Y+C+A N++g fg03766 1356 IIRTVKAEDSGYYSCIANNNWG 1377 SM00406: domain 3 of 3, from 1313 to 1372: score 8.0, E = 0.46 *->svtLsCkaSgftf.yvsWvrqpPsstgkgkglewlgy....sykgRv ++ L+Cka g+ ++ v W + ++ g+++ ++ gR fg03766 1313 DIVLPCKAVGDPSpAVKWMKDSN------------GTpslvTIDGRR 1347 tiskdtltraskndvsLtisnLrpeDtgtYyCar<-* +i + s+ i+ +++eD+g+Y C fg03766 1348 SIFSNG---------SFIIRTVKAEDSGYYSCIA 1372 SM00060: domain 5 of 6, from 1391 to 1471: score 55.0, E = 9.5e-12 *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY P+ P+ l+v+ +ts+ s+tlsW p ++++++ ++i++Y fg03766 1391 PDQPR----LTVSKTTSS------SITLSWLPGdnggssirgyILQY 1427 r..................ytltgLkPgaepwteYefrVrAvngndaGeg ++++++++++ + ++++++y+l++Lk g t Y+f+++A ng +G+g fg03766 1428 SednseqwgsfpispsersYRLENLKCG----TWYKFTLTAQNG--VGPG 1471 <-* fg03766 - - SM00060: domain 6 of 6, from 1488 to 1568: score 4.8, E = 59 *->PgpPsnptelrvtdvtststsdltsvtlsWepP...........ivg + + l ++ +++t v+l ++++ + + +++ fg03766 1488 FSKEQE---LFAS-INTT------RVRLNLI-GwndggcpitsfTLE 1523 Yr..................ytltgLkPgaepwteYefrVrAvngndaGe Yr+ +++++++ ++++ +++y+l +L++ t Ye + r+ n+ aG fg03766 1524 YRpfgttvwttaqrtslsksYILYDLQEA----TWYELQMRVCNS--AGC 1567 g<-* fg03766 1568 A 1568 //