hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-08130102/chunk_1/iprscan-20080809-08130102.nocrc
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Query sequence: fg03852
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00640.13.fs Phosphotyrosine interaction domain (PTB/PID)   186.1    1.7e-54   1
PF00640.13.ls Phosphotyrosine interaction domain (PTB/PID)   188.0    2.1e-53   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00640.13.fs   1/1     112   250 ..     1   165 []   186.1  1.7e-54
PF00640.13.ls   1/1     112   250 ..     1   165 []   188.0  2.1e-53

Alignments of top-scoring domains:
PF00640.13.fs: domain 1 of 1, from 112 to 250: score 186.1, E = 1.7e-54
                   *->FevkYLGsveVpeemrapdkntRmdvaneAisrvkmavpgKkpkakk
                      Fe+kY+Gs++Vp++      n+R++++  A++r++++     +kak+
     fg03852   112    FEAKYVGSLDVPRP------NSRVEIVA-AMRRIRYE-----FKAKN 146  

                   ikrikgsrgerqpgtkidLsistdglklldekteaekevlhdhplrkISF
                   ik++k s + + +g+k++L+ ++++ +++++++   k++++++p+++I++
     fg03852   147 IKKKKVSIMVSVDGVKVILKKKKKKKEWTWDES---KMLVMQDPIYRIFY 193  

                   iavggDpdVdlrtFayarrsqdiiaadgatgkfaCHvFecekgkqlAedi
                   +++  D++ dl++F+y       ia+dga+++f+C+vF+++k k++A++i
     fg03852   194 VSH--DSQ-DLKIFSY-------IARDGASNIFRCNVFKSKK-KSQAMRI 232  

                   aqavGqAFevaYqeflra<-*
                   +++vGqAFev++++ l++   
     fg03852   233 VRTVGQAFEVCHKLSLQH    250  

PF00640.13.ls: domain 1 of 1, from 112 to 250: score 188.0, E = 2.1e-53
                   *->FevkYLGsveVpeemrapdkntRmdvaneAisrvkmavpgKkpkakk
                      Fe+kY+Gs++Vp++      n+R++++  A++r++++     +kak+
     fg03852   112    FEAKYVGSLDVPRP------NSRVEIVA-AMRRIRYE-----FKAKN 146  

                   ikrikgsrgerqpgtkidLsistdglklldekteaekevlhdhplrkISF
                   ik++k s + + +g+k++L+ ++++ +++++++   k++++++p+++I++
     fg03852   147 IKKKKVSIMVSVDGVKVILKKKKKKKEWTWDES---KMLVMQDPIYRIFY 193  

                   iavggDpdVdlrtFayarrsqdiiaadgatgkfaCHvFecekgkqlAedi
                   +++  D++ dl++F+y       ia+dga+++f+C+vF+++k k++A++i
     fg03852   194 VSH--DSQ-DLKIFSY-------IARDGASNIFRCNVFKSKK-KSQAMRI 232  

                   aqavGqAFevaYqeflra<-*
                   +++vGqAFev++++ l++   
     fg03852   233 VRTVGQAFEVCHKLSLQH    250  

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