hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-08130102/chunk_1/iprscan-20080809-08130102.nocrc
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Query sequence: fg03852
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00462                                                 155.4    5.9e-42   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00462    1/1     107   253 ..     1   156 []   155.4  5.9e-42

Alignments of top-scoring domains:
SM00462: domain 1 of 1, from 107 to 253: score 155.4, E = 5.9e-42
                   *->segvsfeVkYLGsvevpearkSlapgkglqvlqeairklr....sek
                      ++g +fe+kY+Gs++vp+++       ++  + +a+r++r + ++++
     fg03852   107    QHGICFEAKYVGSLDVPRPN-------SRVEIVAAMRRIRyefkAKN 146  

                   kkpqkvilsvSsdgvklidektk...........qvlaehplrrIsfcaa
                   +k++kv ++vS+dgvk+i +k k++++ + +++++++++ p++rI ++++
     fg03852   147 IKKKKVSIMVSVDGVKVILKKKKkkkewtwdeskMLVMQDPIYRIFYVSH 196  

                   dpqrwntGgdgstdddrvFgyiardpgssgSnrgtsrfaCHVFrcekaa.
                   d+            d+++F+yiard+ s         f+C VF+++k+++
     fg03852   197 DS-----------QDLKIFSYIARDGASN-------IFRCNVFKSKKKSq 228  

                   aedialaigqaFqvayelklkarse<-*
                   a++i++++gqaF+v+++l+l+++++   
     fg03852   229 AMRIVRTVGQAFEVCHKLSLQHTQQ    253  

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