# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofg04050.fasta.nr -Q fg04050.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fg04050, 934 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6820561 sequences Expectation_n fit: rho(ln(x))= 5.3986+/-0.000191; mu= 13.8405+/- 0.011 mean_var=91.5901+/-17.775, 0's: 48 Z-trim: 54 B-trim: 535 in 2/63 Lambda= 0.134014 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|47606208|sp|Q9C0C4|SEM4C_HUMAN Semaphorin-4C pr ( 833) 5771 1126.5 0 gi|37182802|gb|AAQ89201.1| SEMA4C [Homo sapiens] ( 833) 5768 1125.9 0 gi|109103896|ref|XP_001100467.1| PREDICTED: semaph ( 833) 5636 1100.4 0 gi|119591731|gb|EAW71325.1| sema domain, immunoglo ( 886) 5517 1077.4 0 gi|119903077|ref|XP_604387.3| PREDICTED: similar t ( 944) 5467 1067.8 0 gi|73970098|ref|XP_538464.2| PREDICTED: similar to ( 849) 5453 1065.0 0 gi|114579013|ref|XP_515634.2| PREDICTED: semaphori ( 858) 5209 1017.8 0 gi|148682548|gb|EDL14495.1| mCG17761, isoform CRA_ ( 914) 5179 1012.1 0 gi|8134699|sp|Q64151.1|SEM4C_MOUSE Semaphorin-4C p ( 834) 5119 1000.4 0 gi|149046375|gb|EDL99268.1| sema domain, immunoglo ( 834) 5095 995.8 0 gi|126303453|ref|XP_001379915.1| PREDICTED: simila ( 832) 4933 964.5 0 gi|32425767|gb|AAH17476.2| SEMA4C protein [Homo sa ( 645) 4482 877.2 0 gi|119591732|gb|EAW71326.1| sema domain, immunoglo ( 794) 4318 845.5 0 gi|38649055|gb|AAH62984.1| SEMA4C protein [Homo sa ( 543) 3766 738.7 1.5e-210 gi|62822419|gb|AAY14967.1| unknown [Homo sapiens] ( 510) 3526 692.2 1.3e-196 gi|7020424|dbj|BAA91124.1| unnamed protein product ( 510) 3517 690.5 4.5e-196 gi|50415520|gb|AAH78116.1| Unknown (protein for MG ( 834) 3401 668.3 3.6e-189 gi|194220400|ref|XP_001916376.1| PREDICTED: sema d ( 647) 3124 614.6 4e-173 gi|134054524|emb|CAM73256.1| unnamed protein produ ( 863) 2617 516.7 1.6e-143 gi|122891339|emb|CAM14131.1| novel protein similar ( 811) 2581 509.7 1.9e-141 gi|22761444|dbj|BAC11588.1| unnamed protein produc ( 333) 2302 455.4 1.7e-125 gi|149585882|ref|XP_001520007.1| PREDICTED: simila ( 465) 2303 455.7 1.9e-125 gi|47123219|gb|AAH70859.1| MGC84614 protein [Xenop ( 830) 1927 383.3 2.2e-103 gi|33341678|gb|AAQ15210.1|AF370374_1 FP2823 [Homo ( 374) 1901 377.9 4.1e-102 gi|73998651|ref|XP_543973.2| PREDICTED: similar to ( 840) 1878 373.8 1.6e-100 gi|13633937|sp|Q9NTN9.1|SEM4G_HUMAN Semaphorin-4G ( 838) 1871 372.5 4.1e-100 gi|109090287|ref|XP_001109068.1| PREDICTED: semaph ( 839) 1865 371.3 9.1e-100 gi|149040257|gb|EDL94295.1| sema domain, immunoglo ( 837) 1862 370.7 1.4e-99 gi|8134702|sp|Q9WUH7|SEM4G_MOUSE Semaphorin-4G pre ( 837) 1846 367.6 1.2e-98 gi|126273501|ref|XP_001379491.1| PREDICTED: simila ( 840) 1829 364.3 1.1e-97 gi|109090285|ref|XP_001109124.1| PREDICTED: sema d ( 844) 1798 358.3 7.2e-96 gi|151554276|gb|AAI48104.1| SEMA4G protein [Bos ta ( 844) 1795 357.8 1.1e-95 gi|56462541|emb|CAI10916.1| sema domain, immunoglo ( 843) 1789 356.6 2.4e-95 gi|194205755|ref|XP_001916730.1| PREDICTED: sema d ( 844) 1779 354.7 9.2e-95 gi|47220634|emb|CAG06556.1| unnamed protein produc ( 836) 1772 353.3 2.3e-94 gi|148709996|gb|EDL41942.1| sema domain, immunoglo ( 776) 1765 351.9 5.7e-94 gi|189526148|ref|XP_693092.3| PREDICTED: similar t ( 879) 1743 347.7 1.2e-92 gi|194224945|ref|XP_001493931.2| PREDICTED: simila ( 937) 1727 344.7 1.1e-91 gi|73947068|ref|XP_533551.2| PREDICTED: similar to ( 923) 1707 340.8 1.5e-90 gi|74210023|dbj|BAE21302.1| unnamed protein produc ( 814) 1705 340.3 1.8e-90 gi|49248072|gb|AAH49780.2| Sema domain, immunoglob ( 861) 1705 340.4 1.9e-90 gi|109112122|ref|XP_001090890.1| PREDICTED: semaph ( 862) 1702 339.8 2.8e-90 gi|194041392|ref|XP_001928494.1| PREDICTED: simila ( 865) 1702 339.8 2.9e-90 gi|8134689|sp|O09126.1|SEM4D_MOUSE Semaphorin-4D p ( 861) 1701 339.6 3.2e-90 gi|32493365|gb|AAH54500.1| Sema domain, immunoglob ( 862) 1701 339.6 3.3e-90 gi|37927181|pdb|1OLZ|A Chain A, The Ligand-Binding ( 663) 1699 339.1 3.5e-90 gi|8134701|sp|Q92854.1|SEM4D_HUMAN Semaphorin-4D p ( 862) 1700 339.4 3.7e-90 gi|168270916|dbj|BAG10251.1| semaphorin-4D precurs ( 862) 1700 339.4 3.7e-90 gi|68533115|dbj|BAE06112.1| SEMA4D variant protein ( 870) 1700 339.4 3.7e-90 gi|119583171|gb|EAW62767.1| hCG1985052, isoform CR ( 853) 1695 338.4 7.2e-90 >>gi|47606208|sp|Q9C0C4|SEM4C_HUMAN Semaphorin-4C precur (833 aa) initn: 5771 init1: 5771 opt: 5771 Z-score: 6027.7 bits: 1126.5 E(): 0 Smith-Waterman score: 5771; 100.000% identity (100.000% similar) in 833 aa overlap (102-934:1-833) 80 90 100 110 120 130 fg0405 SPQPSPPGVFGGHFRKIGTAGLKLRAGACAMAPHWAVWLLAARLWGLGIGAEVWWNLVPR :::::::::::::::::::::::::::::: gi|476 MAPHWAVWLLAARLWGLGIGAEVWWNLVPR 10 20 30 140 150 160 170 180 190 fg0405 KTVSSGELATVVRRFSQTGIQDFLTLTLTEPTGLLYVGAREALFAFSMEALELQGAISWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 KTVSSGELATVVRRFSQTGIQDFLTLTLTEPTGLLYVGAREALFAFSMEALELQGAISWE 40 50 60 70 80 90 200 210 220 230 240 250 fg0405 APVEKKTECIQKGKNNQTECFNFIRFLQPYNASHLYVCGTYAFQPKCTYVNMLTFTLEHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 APVEKKTECIQKGKNNQTECFNFIRFLQPYNASHLYVCGTYAFQPKCTYVNMLTFTLEHG 100 110 120 130 140 150 260 270 280 290 300 310 fg0405 EFEDGKGKCPYDPAKGHAGLLVDGELYSATLNNFLGTEPIILRNMGPHHSMKTEYLAFWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 EFEDGKGKCPYDPAKGHAGLLVDGELYSATLNNFLGTEPIILRNMGPHHSMKTEYLAFWL 160 170 180 190 200 210 320 330 340 350 360 370 fg0405 NEPHFVGSAYVPESVGSFTGDDDKVYFFFRERAVESDCYAEQVVARVARVCKGDMGGART :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 NEPHFVGSAYVPESVGSFTGDDDKVYFFFRERAVESDCYAEQVVARVARVCKGDMGGART 220 230 240 250 260 270 380 390 400 410 420 430 fg0405 LQRKWTTFLKARLACSAPNWQLYFNQLQAMHTLQDTSWHNTTFFGVFQAQWGDMYLSAIC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 LQRKWTTFLKARLACSAPNWQLYFNQLQAMHTLQDTSWHNTTFFGVFQAQWGDMYLSAIC 280 290 300 310 320 330 440 450 460 470 480 490 fg0405 EYQLEEIQRVFEGPYKEYHEEAQKWDRYTDPVPSPRPGSCINNWHRRHGYTSSLELPDNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 EYQLEEIQRVFEGPYKEYHEEAQKWDRYTDPVPSPRPGSCINNWHRRHGYTSSLELPDNI 340 350 360 370 380 390 500 510 520 530 540 550 fg0405 LNFVKKHPLMEEQVGPRWSRPLLVKKGTNFTHLVADRVTGLDGATYTVLFIGTGDGWLLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 LNFVKKHPLMEEQVGPRWSRPLLVKKGTNFTHLVADRVTGLDGATYTVLFIGTGDGWLLK 400 410 420 430 440 450 560 570 580 590 600 610 fg0405 AVSLGPWVHLIEELQLFDQEPMRSLVLSQSKKLLFAGSRSQLVQLPVADCMKYRSCADCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 AVSLGPWVHLIEELQLFDQEPMRSLVLSQSKKLLFAGSRSQLVQLPVADCMKYRSCADCV 460 470 480 490 500 510 620 630 640 650 660 670 fg0405 LARDPYCAWSVNTSRCVAVGGHSGSLLIQHVMTSDTSGICNLRGSKKVRPTPKNITVVAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 LARDPYCAWSVNTSRCVAVGGHSGSLLIQHVMTSDTSGICNLRGSKKVRPTPKNITVVAG 520 530 540 550 560 570 680 690 700 710 720 730 fg0405 TDLVLPCHLSSNLAHARWTFGGRDLPAEQPGSFLYDARLQALVVMAAQPRHAGAYHCFSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 TDLVLPCHLSSNLAHARWTFGGRDLPAEQPGSFLYDARLQALVVMAAQPRHAGAYHCFSE 580 590 600 610 620 630 740 750 760 770 780 790 fg0405 EQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 EQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRL 640 650 660 670 680 690 800 810 820 830 840 850 fg0405 REELEKGAKATERTLVYPLELPKEPTSPPFRPCPEPDEKLWDPVGYYYSDGSLKIVPGHA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 REELEKGAKATERTLVYPLELPKEPTSPPFRPCPEPDEKLWDPVGYYYSDGSLKIVPGHA 700 710 720 730 740 750 860 870 880 890 900 910 fg0405 RCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGLGHPLPELA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 RCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGLGHPLPELA 760 770 780 790 800 810 920 930 fg0405 DELRRKLQQRQPLPDSNPEESSV ::::::::::::::::::::::: gi|476 DELRRKLQQRQPLPDSNPEESSV 820 830 >>gi|37182802|gb|AAQ89201.1| SEMA4C [Homo sapiens] (833 aa) initn: 5768 init1: 5768 opt: 5768 Z-score: 6024.6 bits: 1125.9 E(): 0 Smith-Waterman score: 5768; 99.880% identity (100.000% similar) in 833 aa overlap (102-934:1-833) 80 90 100 110 120 130 fg0405 SPQPSPPGVFGGHFRKIGTAGLKLRAGACAMAPHWAVWLLAARLWGLGIGAEVWWNLVPR :::::::::::::::::::::::::::::: gi|371 MAPHWAVWLLAARLWGLGIGAEVWWNLVPR 10 20 30 140 150 160 170 180 190 fg0405 KTVSSGELATVVRRFSQTGIQDFLTLTLTEPTGLLYVGAREALFAFSMEALELQGAISWE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|371 KTVSSGELATVVRRFSQTGIQDFLTLTLTEPTGLLYVGAREALFAFSMEALELQGAISWE 40 50 60 70 80 90 200 210 220 230 240 250 fg0405 APVEKKTECIQKGKNNQTECFNFIRFLQPYNASHLYVCGTYAFQPKCTYVNMLTFTLEHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|371 APVEKKTECIQKGKNNQTECFNFIRFLQPYNASHLYVCGTYAFQPKCTYVNMLTFTLEHG 100 110 120 130 140 150 260 270 280 290 300 310 fg0405 EFEDGKGKCPYDPAKGHAGLLVDGELYSATLNNFLGTEPIILRNMGPHHSMKTEYLAFWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|371 EFEDGKGKCPYDPAKGHAGLLVDGELYSATLNNFLGTEPIILRNMGPHHSMKTEYLAFWL 160 170 180 190 200 210 320 330 340 350 360 370 fg0405 NEPHFVGSAYVPESVGSFTGDDDKVYFFFRERAVESDCYAEQVVARVARVCKGDMGGART :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|371 NEPHFVGSAYVPESVGSFTGDDDKVYFFFRERAVESDCYAEQVVARVARVCKGDMGGART 220 230 240 250 260 270 380 390 400 410 420 430 fg0405 LQRKWTTFLKARLACSAPNWQLYFNQLQAMHTLQDTSWHNTTFFGVFQAQWGDMYLSAIC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|371 LQRKWTTFLKARLACSAPNWQLYFNQLQAMHTLQDTSWHNTTFFGVFQAQWGDMYLSAIC 280 290 300 310 320 330 440 450 460 470 480 490 fg0405 EYQLEEIQRVFEGPYKEYHEEAQKWDRYTDPVPSPRPGSCINNWHRRHGYTSSLELPDNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|371 EYQLEEIQRVFEGPYKEYHEEAQKWDRYTDPVPSPRPGSCINNWHRRHGYTSSLELPDNI 340 350 360 370 380 390 500 510 520 530 540 550 fg0405 LNFVKKHPLMEEQVGPRWSRPLLVKKGTNFTHLVADRVTGLDGATYTVLFIGTGDGWLLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|371 LNFVKKHPLMEEQVGPRWSRPLLVKKGTNFTHLVADRVTGLDGATYTVLFIGTGDGWLLK 400 410 420 430 440 450 560 570 580 590 600 610 fg0405 AVSLGPWVHLIEELQLFDQEPMRSLVLSQSKKLLFAGSRSQLVQLPVADCMKYRSCADCV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|371 AVSLGPWVHLIEELQLFDQEPMRSLVLSQSKKLLFAGSRSQLVQLPVADCMKYRSCADCV 460 470 480 490 500 510 620 630 640 650 660 670 fg0405 LARDPYCAWSVNTSRCVAVGGHSGSLLIQHVMTSDTSGICNLRGSKKVRPTPKNITVVAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|371 LARDPYCAWSVNTSRCVAVGGHSGSLLIQHVMTSDTSGICNLRGSKKVRPTPKNITVVAG 520 530 540 550 560 570 680 690 700 710 720 730 fg0405 TDLVLPCHLSSNLAHARWTFGGRDLPAEQPGSFLYDARLQALVVMAAQPRHAGAYHCFSE :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|371 TDLVLPCHLSSNLAHARWTFGGRDLPAEQPGTFLYDARLQALVVMAAQPRHAGAYHCFSE 580 590 600 610 620 630 740 750 760 770 780 790 fg0405 EQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|371 EQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRL 640 650 660 670 680 690 800 810 820 830 840 850 fg0405 REELEKGAKATERTLVYPLELPKEPTSPPFRPCPEPDEKLWDPVGYYYSDGSLKIVPGHA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|371 REELEKGAKATERTLVYPLELPKEPTSPPFRPCPEPDEKLWDPVGYYYSDGSLKIVPGHA 700 710 720 730 740 750 860 870 880 890 900 910 fg0405 RCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGLGHPLPELA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|371 RCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGLGHPLPELA 760 770 780 790 800 810 920 930 fg0405 DELRRKLQQRQPLPDSNPEESSV ::::::::::::::::::::::: gi|371 DELRRKLQQRQPLPDSNPEESSV 820 830 >>gi|109103896|ref|XP_001100467.1| PREDICTED: semaphorin (833 aa) initn: 5636 init1: 5636 opt: 5636 Z-score: 5886.7 bits: 1100.4 E(): 0 Smith-Waterman score: 5636; 97.239% identity (99.280% similar) in 833 aa overlap (102-934:1-833) 80 90 100 110 120 130 fg0405 SPQPSPPGVFGGHFRKIGTAGLKLRAGACAMAPHWAVWLLAARLWGLGIGAEVWWNLVPR :::::::::::::::::::::::::::::: gi|109 MAPHWAVWLLAARLWGLGIGAEVWWNLVPR 10 20 30 140 150 160 170 180 190 fg0405 KTVSSGELATVVRRFSQTGIQDFLTLTLTEPTGLLYVGAREALFAFSMEALELQGAISWE :::.:::::::::::::::::::::::::: ::::::::::::::::::::::::::::: gi|109 KTVASGELATVVRRFSQTGIQDFLTLTLTEQTGLLYVGAREALFAFSMEALELQGAISWE 40 50 60 70 80 90 200 210 220 230 240 250 fg0405 APVEKKTECIQKGKNNQTECFNFIRFLQPYNASHLYVCGTYAFQPKCTYVNMLTFTLEHG ::.:::::::::::::::::::::::::::::::::.::::::::::::.::::::::.: gi|109 APAEKKTECIQKGKNNQTECFNFIRFLQPYNASHLYACGTYAFQPKCTYINMLTFTLERG 100 110 120 130 140 150 260 270 280 290 300 310 fg0405 EFEDGKGKCPYDPAKGHAGLLVDGELYSATLNNFLGTEPIILRNMGPHHSMKTEYLAFWL :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|109 EFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPIILRNMGPHHSMKTEYLAFWL 160 170 180 190 200 210 320 330 340 350 360 370 fg0405 NEPHFVGSAYVPESVGSFTGDDDKVYFFFRERAVESDCYAEQVVARVARVCKGDMGGART :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: gi|109 NEPHFVGSAYVPESVGSLTGDDDKVYFFFRERAVESDCYAEQVVARVARVCKGDMGGART 220 230 240 250 260 270 380 390 400 410 420 430 fg0405 LQRKWTTFLKARLACSAPNWQLYFNQLQAMHTLQDTSWHNTTFFGVFQAQWGDMYLSAIC ::.:::::::::::::::.::::::::::.:::::::::::::::::::.::::::::.: gi|109 LQKKWTTFLKARLACSAPDWQLYFNQLQAVHTLQDTSWHNTTFFGVFQARWGDMYLSAVC 280 290 300 310 320 330 440 450 460 470 480 490 fg0405 EYQLEEIQRVFEGPYKEYHEEAQKWDRYTDPVPSPRPGSCINNWHRRHGYTSSLELPDNI ::::::::::::::::::.:.:::: ::::::::::::::::::::::::::::::::: gi|109 EYQLEEIQRVFEGPYKEYREQAQKWGRYTDPVPSPRPGSCINNWHRRHGYTSSLELPDNT 340 350 360 370 380 390 500 510 520 530 540 550 fg0405 LNFVKKHPLMEEQVGPRWSRPLLVKKGTNFTHLVADRVTGLDGATYTVLFIGTGDGWLLK :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LNFIKKHPLMEEQVGPRWSRPLLVKKGTNFTHLVADRVTGLDGATYTVLFIGTGDGWLLK 400 410 420 430 440 450 560 570 580 590 600 610 fg0405 AVSLGPWVHLIEELQLFDQEPMRSLVLSQSKKLLFAGSRSQLVQLPVADCMKYRSCADCV :::::::::::::::::::::: ::::.::::::::::::::::::.::::::::::::: gi|109 AVSLGPWVHLIEELQLFDQEPMGSLVLAQSKKLLFAGSRSQLVQLPLADCMKYRSCADCV 460 470 480 490 500 510 620 630 640 650 660 670 fg0405 LARDPYCAWSVNTSRCVAVGGHSGSLLIQHVMTSDTSGICNLRGSKKVRPTPKNITVVAG :::::::::::::::::::::::::::::::: :::::::::::::::: :::::::::: gi|109 LARDPYCAWSVNTSRCVAVGGHSGSLLIQHVMISDTSGICNLRGSKKVRATPKNITVVAG 520 530 540 550 560 570 680 690 700 710 720 730 fg0405 TDLVLPCHLSSNLAHARWTFGGRDLPAEQPGSFLYDARLQALVVMAAQPRHAGAYHCFSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TDLVLPCHLSSNLAHARWTFGGRDLPAEQPGSFLYDARLQALVVMAAQPRHAGAYHCFSE 580 590 600 610 620 630 740 750 760 770 780 790 fg0405 EQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 EQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRL 640 650 660 670 680 690 800 810 820 830 840 850 fg0405 REELEKGAKATERTLVYPLELPKEPTSPPFRPCPEPDEKLWDPVGYYYSDGSLKIVPGHA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 REELEKGAKATERTLVYPLELPKEPTSPPFRPCPEPDEKLWDPVGYYYSDGSLKIVPGHA 700 710 720 730 740 750 860 870 880 890 900 910 fg0405 RCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGLGHPLPELA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGLGHPLPELA 760 770 780 790 800 810 920 930 fg0405 DELRRKLQQRQPLPDSNPEESSV ::::::::::::::::::::::: gi|109 DELRRKLQQRQPLPDSNPEESSV 820 830 >>gi|119591731|gb|EAW71325.1| sema domain, immunoglobuli (886 aa) initn: 5506 init1: 5506 opt: 5517 Z-score: 5762.0 bits: 1077.4 E(): 0 Smith-Waterman score: 5517; 94.965% identity (96.019% similar) in 854 aa overlap (89-934:36-886) 60 70 80 90 100 110 fg0405 ARGRSCNCTVGSPSPQPSPPGVFGGHFRKIGTAGLKLRAGACAMAPHWAV-W-LLAARLW : : .: : . : . : ::.: : gi|119 RKLWLRYPSFLPAAWICLLPGWERLGRPRWGCQGQRLFQ-KCPLLPIRGFGWHLLVA--W 10 20 30 40 50 60 120 130 140 150 160 170 fg0405 GLGIGAEVWWNLVPRKTVSSG------ELATVVRRFSQTGIQDFLTLTLTEPTGLLYVGA : : . . :. . :. ::::::::::::::::::::::::::::::::: gi|119 GAGSRGARLRAVEPQGSCPSAAMLTPAELATVVRRFSQTGIQDFLTLTLTEPTGLLYVGA 70 80 90 100 110 120 180 190 200 210 220 230 fg0405 REALFAFSMEALELQGAISWEAPVEKKTECIQKGKNNQTECFNFIRFLQPYNASHLYVCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 REALFAFSMEALELQGAISWEAPVEKKTECIQKGKNNQTECFNFIRFLQPYNASHLYVCG 130 140 150 160 170 180 240 250 260 270 280 290 fg0405 TYAFQPKCTYVNMLTFTLEHGEFEDGKGKCPYDPAKGHAGLLVDGELYSATLNNFLGTEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TYAFQPKCTYVNMLTFTLEHGEFEDGKGKCPYDPAKGHAGLLVDGELYSATLNNFLGTEP 190 200 210 220 230 240 300 310 320 330 340 350 fg0405 IILRNMGPHHSMKTEYLAFWLNEPHFVGSAYVPESVGSFTGDDDKVYFFFRERAVESDCY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 IILRNMGPHHSMKTEYLAFWLNEPHFVGSAYVPESVGSFTGDDDKVYFFFRERAVESDCY 250 260 270 280 290 300 360 370 380 390 400 410 fg0405 AEQVVARVARVCKGDMGGARTLQRKWTTFLKARLACSAPNWQLYFNQLQAMHTLQDTSWH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AEQVVARVARVCKGDMGGARTLQRKWTTFLKARLACSAPNWQLYFNQLQAMHTLQDTSWH 310 320 330 340 350 360 420 430 440 450 460 470 fg0405 NTTFFGVFQAQWGDMYLSAICEYQLEEIQRVFEGPYKEYHEEAQKWDRYTDPVPSPRPGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NTTFFGVFQAQWGDMYLSAICEYQLEEIQRVFEGPYKEYHEEAQKWDRYTDPVPSPRPGS 370 380 390 400 410 420 480 490 500 510 520 530 fg0405 CINNWHRRHGYTSSLELPDNILNFVKKHPLMEEQVGPRWSRPLLVKKGTNFTHLVADRVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 CINNWHRRHGYTSSLELPDNILNFVKKHPLMEEQVGPRWSRPLLVKKGTNFTHLVADRVT 430 440 450 460 470 480 540 550 560 570 580 590 fg0405 GLDGATYTVLFIGTGDGWLLKAVSLGPWVHLIEELQLFDQEPMRSLVLSQSKKLLFAGSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GLDGATYTVLFIGTGDGWLLKAVSLGPWVHLIEELQLFDQEPMRSLVLSQSKKLLFAGSR 490 500 510 520 530 540 600 610 620 630 640 650 fg0405 SQLVQLPVADCMKYRSCADCVLARDPYCAWSVNTSRCVAVGGHSGSLLIQHVMTSDTSGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SQLVQLPVADCMKYRSCADCVLARDPYCAWSVNTSRCVAVGGHSGSLLIQHVMTSDTSGI 550 560 570 580 590 600 660 670 680 690 700 710 fg0405 CNLRGSKKVRPTPKNITVVAGTDLVLPCHLSSNLAHARWTFGGRDLPAEQPGSFLYDARL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 CNLRGSKKVRPTPKNITVVAGTDLVLPCHLSSNLAHARWTFGGRDLPAEQPGSFLYDARL 610 620 630 640 650 660 720 730 740 750 760 770 fg0405 QALVVMAAQPRHAGAYHCFSEEQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLVWLAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QALVVMAAQPRHAGAYHCFSEEQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLVWLAV 670 680 690 700 710 720 780 790 800 810 820 830 fg0405 VALGAVCLVLLLLVLSLRRRLREELEKGAKATERTLVYPLELPKEPTSPPFRPCPEPDEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VALGAVCLVLLLLVLSLRRRLREELEKGAKATERTLVYPLELPKEPTSPPFRPCPEPDEK 730 740 750 760 770 780 840 850 860 870 880 890 fg0405 LWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGY 790 800 810 820 830 840 900 910 920 930 fg0405 VRLQLGGEDRGGLGHPLPELADELRRKLQQRQPLPDSNPEESSV :::::::::::::::::::::::::::::::::::::::::::: gi|119 VRLQLGGEDRGGLGHPLPELADELRRKLQQRQPLPDSNPEESSV 850 860 870 880 >>gi|119903077|ref|XP_604387.3| PREDICTED: similar to Se (944 aa) initn: 5493 init1: 5464 opt: 5467 Z-score: 5709.4 bits: 1067.8 E(): 0 Smith-Waterman score: 5470; 86.882% identity (92.688% similar) in 930 aa overlap (6-934:45-944) 10 20 30 fg0405 RVFLAGEALSRLEGRDQWSSGPRKRQNWGPNGRPL : :: ::: : .:: . : :: . gi|119 EHQGGGGGEPRQRRRKSRRPPRWRGEPEPRGAEPSRAEGRWQRDSGAGRA---GARGRAV 20 30 40 50 60 70 40 50 60 70 80 90 fg0405 WSAPKDASVPPACLPWILASTWLARGRSCNCTVGS-PSPQPSPPGVFGGHFRKIGTAGLK .: ..:. :::: : : : : . .: .:::. gi|119 GGAREEAD----------------RGRSR--TRGRRPEIQAA---------KKSRAAGLE 80 90 100 100 110 120 130 140 150 fg0405 LRAGACAMAPHWAVWLLAARLWGLGIGAEVWWNLVPRKTVSSGELATVVRRFSQTGIQDF : : :::::::::::::. .:::::.:::::::::::::::::::::::::::::::::: gi|119 LGARACAMAPHWAVWLLVLELWGLGLGAEVWWNLVPRKTVSSGELATVVRRFSQTGIQDF 110 120 130 140 150 160 160 170 180 190 200 210 fg0405 LTLTLTEPTGLLYVGAREALFAFSMEALELQGAISWEAPVEKKTECIQKGKNNQTECFNF ::::::: ::::::::::::::::.:::::::.::::::::::.:::::::.:::::::: gi|119 LTLTLTEQTGLLYVGAREALFAFSVEALELQGVISWEAPVEKKAECIQKGKSNQTECFNF 170 180 190 200 210 220 220 230 240 250 260 270 fg0405 IRFLQPYNASHLYVCGTYAFQPKCTYVNMLTFTLEHGEFEDGKGKCPYDPAKGHAGLLVD ::::::::.:::::::::::::::::..:::::::..:::::::::::::::::.::::: gi|119 IRFLQPYNTSHLYVCGTYAFQPKCTYIDMLTFTLERSEFEDGKGKCPYDPAKGHTGLLVD 230 240 250 260 270 280 280 290 300 310 320 330 fg0405 GELYSATLNNFLGTEPIILRNMGPHHSMKTEYLAFWLNEPHFVGSAYVPESVGSFTGDDD ::::::::::::::::.:::::::::.:::::::::::::::::::::::::::.::::: gi|119 GELYSATLNNFLGTEPVILRNMGPHHAMKTEYLAFWLNEPHFVGSAYVPESVGSYTGDDD 290 300 310 320 330 340 340 350 360 370 380 390 fg0405 KVYFFFRERAVESDCYAEQVVARVARVCKGDMGGARTLQRKWTTFLKARLACSAPNWQLY :::::: ::::: ::::::::::::::::::.::::::::::::::::::.::::.:::: gi|119 KVYFFFSERAVEYDCYAEQVVARVARVCKGDVGGARTLQRKWTTFLKARLVCSAPDWQLY 350 360 370 380 390 400 400 410 420 430 440 450 fg0405 FNQLQAMHTLQDTSWHNTTFFGVFQAQWGDMYLSAICEYQLEEIQRVFEGPYKEYHEEAQ ::.:::.:::::.:::::::::::.:.:::: :::.:::::::::.:::::::::::.:: gi|119 FNRLQALHTLQDASWHNTTFFGVFRARWGDMDLSAVCEYQLEEIQKVFEGPYKEYHEQAQ 410 420 430 440 450 460 460 470 480 490 500 510 fg0405 KWDRYTDPVPSPRPGSCINNWHRRHGYTSSLELPDNILNFVKKHPLMEEQVGPRWSRPLL :: :::::::::::::::::::::::::::::::::::::.:::::::::: :::.:::: gi|119 KWGRYTDPVPSPRPGSCINNWHRRHGYTSSLELPDNILNFIKKHPLMEEQVRPRWGRPLL 470 480 490 500 510 520 520 530 540 550 560 570 fg0405 VKKGTNFTHLVADRVTGLDGATYTVLFIGTGDGWLLKAVSLGPWVHLIEELQLFDQEPMR :::..:.:::::::::::::::::::::::::::::::::::::::::::::::::::.. gi|119 VKKNANLTHLVADRVTGLDGATYTVLFIGTGDGWLLKAVSLGPWVHLIEELQLFDQEPVE 530 540 550 560 570 580 580 590 600 610 620 630 fg0405 SLVLSQSKKLLFAGSRSQLVQLPVADCMKYRSCADCVLARDPYCAWSVNTSRCVAVGGHS :::::.::::::::::::::::: ::::::::::::::::::::::..:.:::::::::: gi|119 SLVLSRSKKLLFAGSRSQLVQLPPADCMKYRSCADCVLARDPYCAWNANSSRCVAVGGHS 590 600 610 620 630 640 640 650 660 670 680 690 fg0405 GSLLIQHVMTSDTSGICNLRGSKKVRPTPKNITVVAGTDLVLPCHLSSNLAHARWTFGGR :::::::: .::::.:::.::::::: :::::::::::::::::.::::::::::::::: gi|119 GSLLIQHVTVSDTSSICNFRGSKKVRLTPKNITVVAGTDLVLPCRLSSNLAHARWTFGGR 650 660 670 680 690 700 700 710 720 730 740 750 fg0405 DLPAEQPGSFLYDARLQALVVMAAQPRHAGAYHCFSEEQGARLAAEGYLVAVVAGPSVTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DLPAEQPGSFLYDARLQALVVMAAQPRHAGAYHCFSEEQGARLAAEGYLVAVVAGPSVTL 710 720 730 740 750 760 760 770 780 790 800 810 fg0405 EARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGAKATERTLVYPLELPK :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|119 EARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGAKAAERTLVYPLELPK 770 780 790 800 810 820 820 830 840 850 860 870 fg0405 EPTSPPFRPCPEPDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSP :::: :::: :: ::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EPTSTPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSP 830 840 850 860 870 880 880 890 900 910 920 930 fg0405 TRLHLGGGRNSNANGYVRLQLGGEDRGGLGHPLPELADELRRKLQQRQPLPDSNPEESSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TRLHLGGGRNSNANGYVRLQLGGEDRGGLGHPLPELADELRRKLQQRQPLPDSNPEESSV 890 900 910 920 930 940 >>gi|73970098|ref|XP_538464.2| PREDICTED: similar to Sem (849 aa) initn: 5453 init1: 5453 opt: 5453 Z-score: 5695.3 bits: 1065.0 E(): 0 Smith-Waterman score: 5453; 92.217% identity (97.642% similar) in 848 aa overlap (87-934:2-849) 60 70 80 90 100 110 fg0405 WLARGRSCNCTVGSPSPQPSPPGVFGGHFRKIGTAGLKLRAGACAMAPHWAVWLLAARLW .. .:::.::: : ::::::::::::. :: gi|739 MRMMAAGLELRAEAFAMAPHWAVWLLAVGLW 10 20 30 120 130 140 150 160 170 fg0405 GLGIGAEVWWNLVPRKTVSSGELATVVRRFSQTGIQDFLTLTLTEPTGLLYVGAREALFA :::::::.::::::::::::::::::::::::.: :::::::::: :::::::::::::. gi|739 GLGIGAEMWWNLVPRKTVSSGELATVVRRFSQSGTQDFLTLTLTEQTGLLYVGAREALFV 40 50 60 70 80 90 180 190 200 210 220 230 fg0405 FSMEALELQGAISWEAPVEKKTECIQKGKNNQTECFNFIRFLQPYNASHLYVCGTYAFQP ::.::::::::::::::.:::.:::::::.::::::::::::::::.::::::::::::: gi|739 FSVEALELQGAISWEAPAEKKAECIQKGKSNQTECFNFIRFLQPYNTSHLYVCGTYAFQP 100 110 120 130 140 150 240 250 260 270 280 290 fg0405 KCTYVNMLTFTLEHGEFEDGKGKCPYDPAKGHAGLLVDGELYSATLNNFLGTEPIILRNM ::::..:::::::.::::::::::::::::::.:::::::::::::::::::::.::::: gi|739 KCTYIDMLTFTLERGEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVILRNM 160 170 180 190 200 210 300 310 320 330 340 350 fg0405 GPHHSMKTEYLAFWLNEPHFVGSAYVPESVGSFTGDDDKVYFFFRERAVESDCYAEQVVA :::::::::::::::::::::::::.:::::::::::::::::: ::::: ::::::::: gi|739 GPHHSMKTEYLAFWLNEPHFVGSAYIPESVGSFTGDDDKVYFFFSERAVEYDCYAEQVVA 220 230 240 250 260 270 360 370 380 390 400 410 fg0405 RVARVCKGDMGGARTLQRKWTTFLKARLACSAPNWQLYFNQLQAMHTLQDTSWHNTTFFG ::::::::::::::::::::::::::::.::::.::::::::::.::::..::::::::: gi|739 RVARVCKGDMGGARTLQRKWTTFLKARLVCSAPDWQLYFNQLQALHTLQEASWHNTTFFG 280 290 300 310 320 330 420 430 440 450 460 470 fg0405 VFQAQWGDMYLSAICEYQLEEIQRVFEGPYKEYHEEAQKWDRYTDPVPSPRPGSCINNWH ::.:.:::. .::.:::::::::::::::::::.:.:::: ::::::::::::::::::: gi|739 VFRARWGDVDMSAVCEYQLEEIQRVFEGPYKEYREQAQKWGRYTDPVPSPRPGSCINNWH 340 350 360 370 380 390 480 490 500 510 520 530 fg0405 RRHGYTSSLELPDNILNFVKKHPLMEEQVGPRWSRPLLVKKGTNFTHLVADRVTGLDGAT :::::::::::::: :::.::::::::::::::.::::::: :::::::::::::::::: gi|739 RRHGYTSSLELPDNTLNFIKKHPLMEEQVGPRWNRPLLVKKDTNFTHLVADRVTGLDGAT 400 410 420 430 440 450 540 550 560 570 580 590 fg0405 YTVLFIGTGDGWLLKAVSLGPWVHLIEELQLFDQEPMRSLVLSQSKKLLFAGSRSQLVQL ::::::::: :::::::::: :::::::::.:::::..:::::.:::::::::::::::: gi|739 YTVLFIGTGGGWLLKAVSLGSWVHLIEELQVFDQEPVESLVLSRSKKLLFAGSRSQLVQL 460 470 480 490 500 510 600 610 620 630 640 650 fg0405 PVADCMKYRSCADCVLARDPYCAWSVNTSRCVAVGGHSGSLLIQHVMTSDTSGICNLRGS :.:::.:::::::::::::::::::::.:::.:::::::::::::: .:::::::::::. gi|739 PLADCVKYRSCADCVLARDPYCAWSVNASRCIAVGGHSGSLLIQHVAVSDTSGICNLRGN 520 530 540 550 560 570 660 670 680 690 700 710 fg0405 KKVRPTPKNITVVAGTDLVLPCHLSSNLAHARWTFGGRDLPAEQPGSFLYDARLQALVVM :::: ::::::::::::::::.:::::::::::::::::::::::::::: :::::::: gi|739 KKVRLIPKNITVVAGTDLVLPCRLSSNLAHARWTFGGRDLPAEQPGSFLYDPRLQALVVM 580 590 600 610 620 630 720 730 740 750 760 770 fg0405 AAQPRHAGAYHCFSEEQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLVWLAVVALGAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 AAQPRHAGAYHCFSEEQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLVWLAVVALGAV 640 650 660 670 680 690 780 790 800 810 820 830 fg0405 CLVLLLLVLSLRRRLREELEKGAKATERTLVYPLELPKEPTSPPFRPCPEPDEKLWDPVG :::::::::::::::::::::::::.::::::::::::::::::::: :: ::::::::: gi|739 CLVLLLLVLSLRRRLREELEKGAKAAERTLVYPLELPKEPTSPPFRPGPETDEKLWDPVG 700 710 720 730 740 750 840 850 860 870 880 890 fg0405 YYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLG :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::: gi|739 YYYSDGSLKIVPGHARCQPGGAPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLG 760 770 780 790 800 810 900 910 920 930 fg0405 GEDRGGLGHPLPELADELRRKLQQRQPLPDSNPEESSV :::::::::::::::::::::::::::::::::::::: gi|739 GEDRGGLGHPLPELADELRRKLQQRQPLPDSNPEESSV 820 830 840 >>gi|114579013|ref|XP_515634.2| PREDICTED: semaphorin 4C (858 aa) initn: 5461 init1: 5208 opt: 5209 Z-score: 5440.3 bits: 1017.8 E(): 0 Smith-Waterman score: 5423; 92.541% identity (94.639% similar) in 858 aa overlap (102-934:1-858) 80 90 100 110 120 130 fg0405 SPQPSPPGVFGGHFRKIGTAGLKLRAGACAMAPHWAVWLLAARLWGLGIGAEVWWNLVPR :::::::::::::::::::::::::::::: gi|114 MAPHWAVWLLAARLWGLGIGAEVWWNLVPR 10 20 30 140 150 160 fg0405 KTVSSG----ELATVVRRFSQTGIQD------------------FLTLTLTEPTGLLY-- :::::: : . . .. : :. . .: :: : .: gi|114 KTVSSGGECLEGGLLCSHLWQPGLGSCWSEGFPEAGSTHSRLCLLLCWTLIEAVGSRAKK 40 50 60 70 80 90 170 180 190 200 210 220 fg0405 -VGAREALFAFSMEALELQGAISWEAPVEKKTECIQKGKNNQTECFNFIRFLQPYNASHL ..:.:: ... ::. . ::::::::::::::::::::::::::::::::::::::: gi|114 EAAAEEARVGWGCPALRPEVPISWEAPVEKKTECIQKGKNNQTECFNFIRFLQPYNASHL 100 110 120 130 140 150 230 240 250 260 270 280 fg0405 YVCGTYAFQPKCTYVNMLTFTLEHGEFEDGKGKCPYDPAKGHAGLLVDGELYSATLNNFL ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|114 YVCGTYAFQPKCTYINMLTFTLEHGEFEDGKGKCPYDPAKGHAGLLVDGELYSATLNNFL 160 170 180 190 200 210 290 300 310 320 330 340 fg0405 GTEPIILRNMGPHHSMKTEYLAFWLNEPHFVGSAYVPESVGSFTGDDDKVYFFFRERAVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 GTEPIILRNMGPHHSMKTEYLAFWLNEPHFVGSAYVPESVGSFTGDDDKVYFFFRERAVE 220 230 240 250 260 270 350 360 370 380 390 400 fg0405 SDCYAEQVVARVARVCKGDMGGARTLQRKWTTFLKARLACSAPNWQLYFNQLQAMHTLQD :::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::: gi|114 SDCYAEQVVARVARVCKGDMGGARTLQKKWTTFLKARLACSAPNWQLYFNQLQAMHTLQD 280 290 300 310 320 330 410 420 430 440 450 460 fg0405 TSWHNTTFFGVFQAQWGDMYLSAICEYQLEEIQRVFEGPYKEYHEEAQKWDRYTDPVPSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TSWHNTTFFGVFQAQWGDMYLSAICEYQLEEIQRVFEGPYKEYHEEAQKWDRYTDPVPSP 340 350 360 370 380 390 470 480 490 500 510 520 fg0405 RPGSCINNWHRRHGYTSSLELPDNILNFVKKHPLMEEQVGPRWSRPLLVKKGTNFTHLVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RPGSCINNWHRRHGYTSSLELPDNILNFVKKHPLMEEQVGPRWSRPLLVKKGTNFTHLVA 400 410 420 430 440 450 530 540 550 560 570 580 fg0405 DRVTGLDGATYTVLFIGTGDGWLLKAVSLGPWVHLIEELQLFDQEPMRSLVLSQSKKLLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DRVTGLDGATYTVLFIGTGDGWLLKAVSLGPWVHLIEELQLFDQEPMRSLVLSQSKKLLF 460 470 480 490 500 510 590 600 610 620 630 640 fg0405 AGSRSQLVQLPVADCMKYRSCADCVLARDPYCAWSVNTSRCVAVGGHSGSLLIQHVMTSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AGSRSQLVQLPVADCMKYRSCADCVLARDPYCAWSVNTSRCVAVGGHSGSLLIQHVMTSD 520 530 540 550 560 570 650 660 670 680 690 700 fg0405 TSGICNLRGSKKVRPTPKNITVVAGTDLVLPCHLSSNLAHARWTFGGRDLPAEQPGSFLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TSGICNLRGSKKVRPTPKNITVVAGTDLVLPCHLSSNLAHARWTFGGRDLPAEQPGSFLY 580 590 600 610 620 630 710 720 730 740 750 760 fg0405 DARLQALVVMAAQPRHAGAYHCFSEEQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DARLQALVVMAAQPRHAGAYHCFSEEQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLV 640 650 660 670 680 690 770 780 790 800 810 820 fg0405 WLAVVALGAVCLVLLLLVLSLRRRLREELEKGAKATERTLVYPLELPKEPTSPPFRPCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 WLAVVALGAVCLVLLLLVLSLRRRLREELEKGAKATERTLVYPLELPKEPTSPPFRPCPE 700 710 720 730 740 750 830 840 850 860 870 880 fg0405 PDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSN 760 770 780 790 800 810 890 900 910 920 930 fg0405 ANGYVRLQLGGEDRGGLGHPLPELADELRRKLQQRQPLPDSNPEESSV :::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ANGYVRLQLGGEDRGGLGHPLPELADELRRKLQQRQPLPDSNPEESSV 820 830 840 850 >>gi|148682548|gb|EDL14495.1| mCG17761, isoform CRA_b [M (914 aa) initn: 5149 init1: 3315 opt: 5179 Z-score: 5408.6 bits: 1012.1 E(): 0 Smith-Waterman score: 5179; 82.571% identity (91.721% similar) in 918 aa overlap (21-934:6-914) 10 20 30 40 50 fg0405 RVFLAGEALSRLEGRDQWSSGPR-KRQNWGPNGRPLWSA-PKDASVPPACLPWILASTWL :: .:.: : : .:.: : : . : : : gi|148 KAPPPGPSLERRNPRP-GVQVWGANPGPAPLHPLGCP-----CPL 10 20 30 60 70 80 90 100 110 fg0405 ARGRSCNCTVGSPSPQPS-PPGVFGGHFRKIGTAGLKLRAGACAMAPHWAVWLLAARLWG : . . ....:. . : ::: : . . .::::.: . ::::::::::::: ::: gi|148 LREELGGWVTATPADSRSAPPG-FDPSLGR--AAGLKFRPWVSAMAPHWAVWLLAAGLWG 40 50 60 70 80 90 120 130 140 150 160 170 fg0405 LGIGAEVWWNLVPRKTVSSGELATVVRRFSQTGIQDFLTLTLTEPTGLLYVGAREALFAF ::::::.:::::::::::::::.::::::::::::::::::::: .:::::::::::::: gi|148 LGIGAEMWWNLVPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTEHSGLLYVGAREALFAF 100 110 120 130 140 150 180 190 200 210 220 230 fg0405 SMEALELQGAISWEAPVEKKTECIQKGKNNQTECFNFIRFLQPYNASHLYVCGTYAFQPK :.::::::::::::::.::: :: ::::.::::::::::::::::.:::::::::::::: gi|148 SVEALELQGAISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPYNSSHLYVCGTYAFQPK 160 170 180 190 200 210 240 250 260 270 280 290 fg0405 CTYVNMLTFTLEHGEFEDGKGKCPYDPAKGHAGLLVDGELYSATLNNFLGTEPIILRNMG :::.:::::::...:::::::::::::::::.:::::::::::::::::::::.::: :: gi|148 CTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVILRYMG 220 230 240 250 260 270 300 310 320 330 340 350 fg0405 PHHSMKTEYLAFWLNEPHFVGSAYVPESVGSFTGDDDKVYFFFRERAVESDCYAEQVVAR :::.::::::::::::::::::.::::::::::::::.:::: ::::: :::.:::::: gi|148 THHSIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVAR 280 290 300 310 320 330 360 370 380 390 400 410 fg0405 VARVCKGDMGGARTLQRKWTTFLKARLACSAPNWQLYFNQLQAMHTLQDTSWHNTTFFGV ::::::::::::::::.::::::::::.::::.:..:::::.:.:::. .:::::::::: gi|148 VARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLKAVHTLRGASWHNTTFFGV 340 350 360 370 380 390 420 430 440 450 460 470 fg0405 FQAQWGDMYLSAICEYQLEEIQRVFEGPYKEYHEEAQKWDRYTDPVPSPRPGSCINNWHR :::.:::: :::.::::::.::.::::::::: :.:::: :::::::::::::::::::: gi|148 FQARWGDMDLSAVCEYQLEQIQQVFEGPYKEYSEQAQKWARYTDPVPSPRPGSCINNWHR 400 410 420 430 440 450 480 490 500 510 520 530 fg0405 RHGYTSSLELPDNILNFVKKHPLMEEQVGPRWSRPLLVKKGTNFTHLVADRVTGLDGATY .::::::::::: :::.:::::::.:: :: .:::::::.:::::.::::: ::::::: gi|148 DNGYTSSLELPDNTLNFIKKHPLMEDQVKPRLGRPLLVKKNTNFTHVVADRVPGLDGATY 460 470 480 490 500 510 540 550 560 570 580 590 fg0405 TVLFIGTGDGWLLKAVSLGPWVHLIEELQLFDQEPMRSLVLSQSKKLLFAGSRSQLVQLP :::::::::::::::::::::.:..::::.:::::..:::::::::.:::::::::::: gi|148 TVLFIGTGDGWLLKAVSLGPWIHMVEELQVFDQEPVESLVLSQSKKVLFAGSRSQLVQLS 520 530 540 550 560 570 600 610 620 630 640 650 fg0405 VADCMKYRSCADCVLARDPYCAWSVNTSRCVAV-GGHSGSLLIQHVMTSDTSGICNLRGS .::: ::: :.::::::::::::.::::::::. .:.:::.:.::: . ::: .:: : gi|148 LADCTKYRFCVDCVLARDPYCAWNVNTSRCVATTSGRSGSFLVQHVANLDTSKMCNQYGI 580 590 600 610 620 630 660 670 680 690 700 710 fg0405 KKVRPTPKNITVVAGTDLVLPCHLSSNLAHARWTFGGRDLPAEQPGSFLYDARLQALVVM :::: :::::::.:::::::::::::::::.::::..:::::::::::::. ::::::: gi|148 KKVRSIPKNITVVSGTDLVLPCHLSSNLAHAHWTFGSQDLPAEQPGSFLYDTGLQALVVM 640 650 660 670 680 690 720 730 740 750 760 770 fg0405 AAQPRHAGAYHCFSEEQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLVWLAVVALGAV ::: ::.: :.:.:::::.:::::.:::::::: :::::::::::::::::::::::::: gi|148 AAQSRHSGPYRCYSEEQGTRLAAESYLVAVVAGSSVTLEARAPLENLGLVWLAVVALGAV 700 710 720 730 740 750 780 790 800 810 820 830 fg0405 CLVLLLLVLSLRRRLREELEKGAKATERTLVYPLELPKEPTSPPFRPCPEPDEKLWDPVG :::::::::::::::::::::::::.::::::::::::::.:::::: :: ::::::::: gi|148 CLVLLLLVLSLRRRLREELEKGAKASERTLVYPLELPKEPASPPFRPGPETDEKLWDPVG 760 770 780 790 800 810 840 850 860 870 880 890 fg0405 YYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 YYYSDGSLKIVPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLG 820 830 840 850 860 870 900 910 920 930 fg0405 GEDRGGLGHPLPELADELRRKLQQRQPLPDSNPEESSV :::::: ::::::::::::::::::::::::::::::: gi|148 GEDRGGSGHPLPELADELRRKLQQRQPLPDSNPEESSV 880 890 900 910 >>gi|8134699|sp|Q64151.1|SEM4C_MOUSE Semaphorin-4C precu (834 aa) initn: 5117 init1: 3283 opt: 5119 Z-score: 5346.5 bits: 1000.4 E(): 0 Smith-Waterman score: 5119; 87.770% identity (95.683% similar) in 834 aa overlap (102-934:1-834) 80 90 100 110 120 130 fg0405 SPQPSPPGVFGGHFRKIGTAGLKLRAGACAMAPHWAVWLLAARLWGLGIGAEVWWNLVPR :::::::::::: :::::::::.::::::: gi|813 MAPHWAVWLLAAGLWGLGIGAEMWWNLVPR 10 20 30 140 150 160 170 180 190 fg0405 KTVSSGELATVVRRFSQTGIQDFLTLTLTEPTGLLYVGAREALFAFSMEALELQGAISWE ::::::::.::::::::::::::::::::: .:::::::::::::::.:::::::::::: gi|813 KTVSSGELVTVVRRFSQTGIQDFLTLTLTEHSGLLYVGAREALFAFSVEALELQGAISWE 40 50 60 70 80 90 200 210 220 230 240 250 fg0405 APVEKKTECIQKGKNNQTECFNFIRFLQPYNASHLYVCGTYAFQPKCTYVNMLTFTLEHG ::.::: :: ::::.::::::::::::::::.:::::::::::::::::.:::::::... gi|813 APAEKKIECTQKGKSNQTECFNFIRFLQPYNSSHLYVCGTYAFQPKCTYINMLTFTLDRA 100 110 120 130 140 150 260 270 280 290 300 310 fg0405 EFEDGKGKCPYDPAKGHAGLLVDGELYSATLNNFLGTEPIILRNMGPHHSMKTEYLAFWL :::::::::::::::::.:::::::::::::::::::::.::: :: :::.::::::::: gi|813 EFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVILRYMGTHHSIKTEYLAFWL 160 170 180 190 200 210 320 330 340 350 360 370 fg0405 NEPHFVGSAYVPESVGSFTGDDDKVYFFFRERAVESDCYAEQVVARVARVCKGDMGGART :::::::::.::::::::::::::.:::: ::::: :::.:::::::::::::::::::: gi|813 NEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVARVARVCKGDMGGART 220 230 240 250 260 270 380 390 400 410 420 430 fg0405 LQRKWTTFLKARLACSAPNWQLYFNQLQAMHTLQDTSWHNTTFFGVFQAQWGDMYLSAIC ::.::::::::::.::::.:..:::::.:.:::. .:::::::::::::.:::: :::.: gi|813 LQKKWTTFLKARLVCSAPDWKVYFNQLKAVHTLRGASWHNTTFFGVFQARWGDMDLSAVC 280 290 300 310 320 330 440 450 460 470 480 490 fg0405 EYQLEEIQRVFEGPYKEYHEEAQKWDRYTDPVPSPRPGSCINNWHRRHGYTSSLELPDNI :::::.::.::::::::: :.:::: :::::::::::::::::::: .::::::::::: gi|813 EYQLEQIQQVFEGPYKEYSEQAQKWARYTDPVPSPRPGSCINNWHRDNGYTSSLELPDNT 340 350 360 370 380 390 500 510 520 530 540 550 fg0405 LNFVKKHPLMEEQVGPRWSRPLLVKKGTNFTHLVADRVTGLDGATYTVLFIGTGDGWLLK :::.:::::::.:: :: .:::::::.:::::.::::: ::::::::::::::::::::: gi|813 LNFIKKHPLMEDQVKPRLGRPLLVKKNTNFTHVVADRVPGLDGATYTVLFIGTGDGWLLK 400 410 420 430 440 450 560 570 580 590 600 610 fg0405 AVSLGPWVHLIEELQLFDQEPMRSLVLSQSKKLLFAGSRSQLVQLPVADCMKYRSCADCV :::::::.:..::::.:::::..:::::::::.:::::::::::: .::: ::: :.::: gi|813 AVSLGPWIHMVEELQVFDQEPVESLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCV 460 470 480 490 500 510 620 630 640 650 660 670 fg0405 LARDPYCAWSVNTSRCVAV-GGHSGSLLIQHVMTSDTSGICNLRGSKKVRPTPKNITVVA :::::::::.::::::::. .:.:::.:.::: . ::: .:: : :::: :::::::. gi|813 LARDPYCAWNVNTSRCVATTSGRSGSFLVQHVANLDTSKMCNQYGIKKVRSIPKNITVVS 520 530 540 550 560 570 680 690 700 710 720 730 fg0405 GTDLVLPCHLSSNLAHARWTFGGRDLPAEQPGSFLYDARLQALVVMAAQPRHAGAYHCFS :::::::::::::::::.::::..:::::::::::::. :::::::::: ::.: :.:.: gi|813 GTDLVLPCHLSSNLAHAHWTFGSQDLPAEQPGSFLYDTGLQALVVMAAQSRHSGPYRCYS 580 590 600 610 620 630 740 750 760 770 780 790 fg0405 EEQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRR ::::.:::::.:::::::: :::::::::::::::::::::::::::::::::::::::: gi|813 EEQGTRLAAESYLVAVVAGSSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRR 640 650 660 670 680 690 800 810 820 830 840 850 fg0405 LREELEKGAKATERTLVYPLELPKEPTSPPFRPCPEPDEKLWDPVGYYYSDGSLKIVPGH :::::::::::.::::::::::::::.:::::: :: ::::::::::::::::::::::: gi|813 LREELEKGAKASERTLVYPLELPKEPASPPFRPGPETDEKLWDPVGYYYSDGSLKIVPGH 700 710 720 730 740 750 860 870 880 890 900 910 fg0405 ARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGLGHPLPEL :::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: gi|813 ARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGSGHPLPEL 760 770 780 790 800 810 920 930 fg0405 ADELRRKLQQRQPLPDSNPEESSV :::::::::::::::::::::::: gi|813 ADELRRKLQQRQPLPDSNPEESSV 820 830 >>gi|149046375|gb|EDL99268.1| sema domain, immunoglobuli (834 aa) initn: 5093 init1: 3389 opt: 5095 Z-score: 5321.4 bits: 995.8 E(): 0 Smith-Waterman score: 5095; 87.050% identity (95.324% similar) in 834 aa overlap (102-934:1-834) 80 90 100 110 120 130 fg0405 SPQPSPPGVFGGHFRKIGTAGLKLRAGACAMAPHWAVWLLAARLWGLGIGAEVWWNLVPR :::::::::::: :::::::::.::::.:: gi|149 MAPHWAVWLLAAGLWGLGIGAEMWWNLAPR 10 20 30 140 150 160 170 180 190 fg0405 KTVSSGELATVVRRFSQTGIQDFLTLTLTEPTGLLYVGAREALFAFSMEALELQGAISWE ::::::::.::::::::::::::::::::. .:::::::::::::::.:::::::.:::: gi|149 KTVSSGELVTVVRRFSQTGIQDFLTLTLTDRSGLLYVGAREALFAFSVEALELQGVISWE 40 50 60 70 80 90 200 210 220 230 240 250 fg0405 APVEKKTECIQKGKNNQTECFNFIRFLQPYNASHLYVCGTYAFQPKCTYVNMLTFTLEHG ::.::: :: ::::.::::::::::::::::::::::::::::::::::.:::::::... gi|149 APAEKKIECTQKGKSNQTECFNFIRFLQPYNASHLYVCGTYAFQPKCTYINMLTFTLDRA 100 110 120 130 140 150 260 270 280 290 300 310 fg0405 EFEDGKGKCPYDPAKGHAGLLVDGELYSATLNNFLGTEPIILRNMGPHHSMKTEYLAFWL :::::::::::::::::.:::::::::::::::::::::.::::::::: .::::::::: gi|149 EFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVILRNMGPHHPIKTEYLAFWL 160 170 180 190 200 210 320 330 340 350 360 370 fg0405 NEPHFVGSAYVPESVGSFTGDDDKVYFFFRERAVESDCYAEQVVARVARVCKGDMGGART :::::::::.::::::::::::::.:::: ::::: :::.:::::::::::::::::::: gi|149 NEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVARVARVCKGDMGGART 220 230 240 250 260 270 380 390 400 410 420 430 fg0405 LQRKWTTFLKARLACSAPNWQLYFNQLQAMHTLQDTSWHNTTFFGVFQAQWGDMYLSAIC ::.::::::::::.::::.:..:::::.:.::: .::::::::.::::.:::: :::.: gi|149 LQKKWTTFLKARLVCSAPDWKVYFNQLRAVHTLLGASWHNTTFFAVFQARWGDMDLSAVC 280 290 300 310 320 330 440 450 460 470 480 490 fg0405 EYQLEEIQRVFEGPYKEYHEEAQKWDRYTDPVPSPRPGSCINNWHRRHGYTSSLELPDNI :::::.::.:::::.::: :.:::: :::::::.:::::::::::: .::::::::::: gi|149 EYQLEHIQQVFEGPFKEYSEQAQKWARYTDPVPTPRPGSCINNWHRDNGYTSSLELPDNT 340 350 360 370 380 390 500 510 520 530 540 550 fg0405 LNFVKKHPLMEEQVGPRWSRPLLVKKGTNFTHLVADRVTGLDGATYTVLFIGTGDGWLLK :::.:::::::::: :: .:::::::.:::::.::::. ::::::::::::::::::::: gi|149 LNFIKKHPLMEEQVKPRLGRPLLVKKNTNFTHVVADRILGLDGATYTVLFIGTGDGWLLK 400 410 420 430 440 450 560 570 580 590 600 610 fg0405 AVSLGPWVHLIEELQLFDQEPMRSLVLSQSKKLLFAGSRSQLVQLPVADCMKYRSCADCV :::::::.:..::::.:::::..:::::::::.:::::::::::: .::: ::: :.::: gi|149 AVSLGPWIHMVEELQVFDQEPVESLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCV 460 470 480 490 500 510 620 630 640 650 660 670 fg0405 LARDPYCAWSVNTSRCVAVGGHSGSLLIQHVMTSDTSGICNLRGSKKVRPT-PKNITVVA :::::::::.::::::::.::::::::.::: . : : .: . ::.::. :::::::: gi|149 LARDPYCAWNVNTSRCVATGGHSGSLLVQHVANLDPSKMCIQYAIKKARPVVPKNITVVA 520 530 540 550 560 570 680 690 700 710 720 730 fg0405 GTDLVLPCHLSSNLAHARWTFGGRDLPAEQPGSFLYDARLQALVVMAAQPRHAGAYHCFS ::::::::::::::::: ::: :::::::::::::::. :::::::::: ::.: :::.: gi|149 GTDLVLPCHLSSNLAHALWTFRGRDLPAEQPGSFLYDTGLQALVVMAAQSRHSGPYHCYS 580 590 600 610 620 630 740 750 760 770 780 790 fg0405 EEQGARLAAEGYLVAVVAGPSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRR ::::..::::.:::.:::: :::::::::::::::::::::::::::::::::::::::: gi|149 EEQGTKLAAESYLVSVVAGSSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRR 640 650 660 670 680 690 800 810 820 830 840 850 fg0405 LREELEKGAKATERTLVYPLELPKEPTSPPFRPCPEPDEKLWDPVGYYYSDGSLKIVPGH ::::::::.::.::::::::::::::.:::::: :: ::::::::::::::::::::::: gi|149 LREELEKGSKAAERTLVYPLELPKEPASPPFRPGPETDEKLWDPVGYYYSDGSLKIVPGH 700 710 720 730 740 750 860 870 880 890 900 910 fg0405 ARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDRGGLGHPLPEL :::::::::::::::::::::::::::::::::::::::::::::::::: : ::::::. gi|149 ARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDREGSGHPLPEI 760 770 780 790 800 810 920 930 fg0405 ADELRRKLQQRQPLPDSNPEESSV :::::::::::::::::::::::: gi|149 ADELRRKLQQRQPLPDSNPEESSV 820 830 934 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sat Aug 9 08:23:47 2008 done: Sat Aug 9 08:25:47 2008 Total Scan time: 1027.070 Total Display time: 0.500 Function used was FASTA [version 34.26.5 April 26, 2007]