hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-08254826/chunk_1/iprscan-20080809-08254826.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fg04050
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01403.10.ls Sema domain                                    686.0   2.6e-203   1
PF01403.10.fs Sema domain                                    684.0     1e-202   1
PF01437.15.fs Plexin repeat                                   42.7    2.3e-13   1
PF01437.15.ls Plexin repeat                                   44.4    3.5e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01403.10.fs   1/1     154   582 ..     1   490 []   684.0   1e-202
PF01403.10.ls   1/1     154   582 ..     1   490 []   686.0 2.6e-203
PF01437.15.fs   1/1     600   652 ..     1    63 []    42.7  2.3e-13
PF01437.15.ls   1/1     600   652 ..     1    63 []    44.4  3.5e-10

Alignments of top-scoring domains:
PF01403.10.fs: domain 1 of 1, from 154 to 582: score 684.0, E = 1e-202
                   *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek
                      f tl+l e +g LyVGAr+++++++ e l e+ q +i W+++   ek
     fg04050   154    FLTLTLTEPTGLLYVGAREALFAFSMEAL-EL-QGAISWEAP--VEK 196  

                   ceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl
                   ++eC++kGk +   +teC+Nfir Lqpyn++hLyvCGT+aFqP+Ct++n+
     fg04050   197 KTECIQKGKNN---QTECFNFIRFLQPYNASHLYVCGTYAFQPKCTYVNM 243  

                   gdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtgeL
                    +             F+l+++++e+Gkg+CPydP+++++++lv +  geL
     fg04050   244 LT-------------FTLEHGEFEDGKGKCPYDPAKGHAGLLV-D--GEL 277  

                   YsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVdsy
                   Ys+t+++      F+G++p+I R +g h+ ++Te+  + wlneP+FV+s 
     fg04050   278 YSATLNN------FLGTEPIILRNMGPHHSMKTEY-LAFWLNEPHFVGSA 320  

                   pipyvhsf...dDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGr
                    +p++    ++dDdkVYFFFrE+ave + ++ +++++RVaRvCk+D+GG+
     fg04050   321 YVPESVGSftgDDDKVYFFFRERAVESD-CYAEQVVARVARVCKGDMGGA 369  

                   rylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreL
                   r+l+  kWTTFLKARL CS p  ++ +  yFN+LQa ++l+  ++     
     fg04050   370 RTLQ-RKWTTFLKARLACSAP--NW-Q-LYFNQLQAMHTLQDTSW----- 409  

                   gIserdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqs
                       +++ ++GVF+ ++ ++      SA+C +++  I++vF +Gp+k+++
     fg04050   410 ----HNTTFFGVFQAQWGDMYL----SAICEYQLEEIQRVF-EGPYKEYH 450  

                   sEgpnskwlpyrglkvPyPRPGqCpndssgp.nytStkdlPDdtlnfiks
                        +kw +y++ +vP+PRPG+C+n++++ ++ytS+++lPD+ lnf+k+
     fg04050   451 E--EAQKWDRYTD-PVPSPRPGSCINNWHRRhGYTSSLELPDNILNFVKK 497  

                   hpLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGT
                   hpLm+e+v P   rPl+v++++  ++T++++d rV ++dG +YtVlF+GT
     fg04050   498 HPLMEEQVGPRWSRPLLVKKGT--NFTHLVAD-RVTGLDGATYTVLFIGT 544  

                   ddGtvlKkvvvlsrsss.syeevvleelqvfkdpriePvqnleisskq<-
                    dG++l k+v+l  + + +    ++eelq+f d+  eP+++l++s+++  
     fg04050   545 GDGWLL-KAVSL--GPWvH----LIEELQLF-DQ--EPMRSLVLSQSK   582  

                   *
                    
     fg04050     -   -    

PF01403.10.ls: domain 1 of 1, from 154 to 582: score 686.0, E = 2.6e-203
                   *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek
                      f tl+l e +g LyVGAr+++++++ e l e+ q +i W+++   ek
     fg04050   154    FLTLTLTEPTGLLYVGAREALFAFSMEAL-EL-QGAISWEAP--VEK 196  

                   ceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl
                   ++eC++kGk +   +teC+Nfir Lqpyn++hLyvCGT+aFqP+Ct++n+
     fg04050   197 KTECIQKGKNN---QTECFNFIRFLQPYNASHLYVCGTYAFQPKCTYVNM 243  

                   gdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtgeL
                    +             F+l+++++e+Gkg+CPydP+++++++lv +  geL
     fg04050   244 LT-------------FTLEHGEFEDGKGKCPYDPAKGHAGLLV-D--GEL 277  

                   YsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVdsy
                   Ys+t+++      F+G++p+I R +g h+ ++Te+  + wlneP+FV+s 
     fg04050   278 YSATLNN------FLGTEPIILRNMGPHHSMKTEY-LAFWLNEPHFVGSA 320  

                   pipyvhsf...dDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGr
                    +p++    ++dDdkVYFFFrE+ave + ++ +++++RVaRvCk+D+GG+
     fg04050   321 YVPESVGSftgDDDKVYFFFRERAVESD-CYAEQVVARVARVCKGDMGGA 369  

                   rylelnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreL
                   r+l+  kWTTFLKARL CS p  ++ +  yFN+LQa ++l+  ++     
     fg04050   370 RTLQ-RKWTTFLKARLACSAP--NW-Q-LYFNQLQAMHTLQDTSW----- 409  

                   gIserdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqs
                       +++ ++GVF+ ++ ++      SA+C +++  I++vF +Gp+k+++
     fg04050   410 ----HNTTFFGVFQAQWGDMYL----SAICEYQLEEIQRVF-EGPYKEYH 450  

                   sEgpnskwlpyrglkvPyPRPGqCpndssgp.nytStkdlPDdtlnfiks
                        +kw +y++ +vP+PRPG+C+n++++ ++ytS+++lPD+ lnf+k+
     fg04050   451 E--EAQKWDRYTD-PVPSPRPGSCINNWHRRhGYTSSLELPDNILNFVKK 497  

                   hpLmdevvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGT
                   hpLm+e+v P   rPl+v++++  ++T++++d rV ++dG +YtVlF+GT
     fg04050   498 HPLMEEQVGPRWSRPLLVKKGT--NFTHLVAD-RVTGLDGATYTVLFIGT 544  

                   ddGtvlKkvvvlsrsss.syeevvleelqvfkdpriePvqnleisskq<-
                    dG++l k+v+l  + + +    ++eelq+f d+  eP+++l++s+++  
     fg04050   545 GDGWLL-KAVSL--GPWvH----LIEELQLF-DQ--EPMRSLVLSQSK   582  

                   *
                    
     fg04050     -   -    

PF01437.15.fs: domain 1 of 1, from 600 to 652: score 42.7, E = 2.3e-13
                   *->nCsqytsCssCLaardpfyCgWCssegrCtrgsayt.sf.ygeCprs
                      +C  y+sC++C++ardp yC+W ++++rC+  + + +s+ +++   s
     fg04050   600    DCMKYRSCADCVLARDP-YCAWSVNTSRCVAVGGHSgSLlIQHVMTS 645  

                   ependqwldwswssskCp<-*
                   +           +s  C    
     fg04050   646 D-----------TSGICN    652  

PF01437.15.ls: domain 1 of 1, from 600 to 652: score 44.4, E = 3.5e-10
                   *->nCsqytsCssCLaardpfyCgWCssegrCtrgsayt.sf.ygeCprs
                      +C  y+sC++C++ardp yC+W ++++rC+  + + +s+ +++   s
     fg04050   600    DCMKYRSCADCVLARDP-YCAWSVNTSRCVAVGGHSgSLlIQHVMTS 645  

                   ependqwldwswssskCp<-*
                   +           +s  C    
     fg04050   646 D-----------TSGICN    652  

//