hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-08322881/chunk_1/iprscan-20080809-08322881.nocrc
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Query sequence: fg04081
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00319.9.fs SRF-type transcription factor (DNA-binding a    91.8    3.2e-25   1
PF00319.9.ls SRF-type transcription factor (DNA-binding a    93.8    4.7e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00319.9.fs   1/1      14    64 ..     1    51 []    91.8  3.2e-25
PF00319.9.ls   1/1      14    64 ..     1    51 []    93.8  4.7e-25

Alignments of top-scoring domains:
PF00319.9.fs: domain 1 of 1, from 14 to 64: score 91.8, E = 3.2e-25
                   *->krIenksnrqVTfsKRrnGllKKAhELSVLCdaeVaviifsstGkly
                      +rI +++nrqVTf+KR+ Gl+KKA+ELSVLCd e+a+iif +++kl+
     fg04081    14    QRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLF 60   

                   eyss<-*
                    y+s   
     fg04081    61 QYAS    64   

PF00319.9.ls: domain 1 of 1, from 14 to 64: score 93.8, E = 4.7e-25
                   *->krIenksnrqVTfsKRrnGllKKAhELSVLCdaeVaviifsstGkly
                      +rI +++nrqVTf+KR+ Gl+KKA+ELSVLCd e+a+iif +++kl+
     fg04081    14    QRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLF 60   

                   eyss<-*
                    y+s   
     fg04081    61 QYAS    64   

//