hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-08391801/chunk_1/iprscan-20080809-08391801.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fg04234 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01344.15.ls Kelch motif 179.1 1e-50 5 PF01344.15.fs Kelch motif 169.1 1.1e-47 5 PF00651.21.ls BTB/POZ domain 108.3 2.1e-29 1 PF00651.21.fs BTB/POZ domain 106.5 3.3e-29 1 PF07707.5.ls BTB And C-terminal Kelch 73.5 6.4e-19 1 PF07707.5.fs BTB And C-terminal Kelch 71.5 1.1e-18 1 PF07646.5.ls Kelch motif 61.8 2e-15 4 PF07646.5.fs Kelch motif 57.6 8.4e-15 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.ls 1/1 22 129 .. 1 135 [] 108.3 2.1e-29 PF00651.21.fs 1/1 22 129 .. 1 135 [] 106.5 3.3e-29 PF07707.5.fs 1/1 134 238 .. 1 103 [] 71.5 1.1e-18 PF07707.5.ls 1/1 134 238 .. 1 103 [] 73.5 6.4e-19 PF01344.15.ls 1/5 317 367 .. 1 45 [] 26.5 8.7e-05 PF01344.15.fs 1/5 317 367 .. 1 45 [] 24.5 4e-06 PF01344.15.ls 2/5 369 414 .. 1 45 [] 37.8 3.4e-08 PF01344.15.fs 2/5 369 414 .. 1 45 [] 35.8 2.4e-09 PF07646.5.ls 2/4 369 414 .. 1 54 [] 14.7 0.31 PF01344.15.fs 3/5 416 476 .. 1 45 [] 17.9 0.0003 PF01344.15.ls 3/5 416 476 .. 1 45 [] 19.9 0.0086 PF07646.5.ls 3/4 478 530 .. 1 54 [] 22.2 0.0018 PF01344.15.ls 4/5 478 530 .. 1 45 [] 57.8 3.3e-14 PF01344.15.fs 4/5 478 530 .. 1 45 [] 55.8 5.1e-15 PF07646.5.fs 4/5 478 530 .. 1 54 [] 20.2 0.00012 PF01344.15.ls 5/5 532 578 .. 1 45 [] 37.1 5.6e-08 PF07646.5.fs 5/5 532 578 .. 1 54 [] 18.5 0.00036 PF07646.5.ls 4/4 532 578 .. 1 54 [] 20.4 0.0061 PF01344.15.fs 5/5 532 578 .. 1 45 [] 35.1 3.9e-09 Alignments of top-scoring domains: PF00651.21.ls: domain 1 of 1, from 22 to 129: score 108.3, E = 2.1e-29 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal + +l+++g l DVtLv++d ++f AHKa La S+YF+ + fg04234 22 FRALYEEGLLLDVTLVIED--------HQFQAHKALLATQSDYFRIM 60 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ft + + e+++ i l++ +++ f +L+f+Y g+++++ fg04234 61 FTAD------MRERDQD-KIHLKGLTATGFSHVLQFMYYGTIELS----- 98 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* + +v+++L+aA + q+ +v+ C++fl+ ++ fg04234 99 ------MNTVHEILQAA-MYVQLIEVVKFCCSFLLAKI 129 PF00651.21.fs: domain 1 of 1, from 22 to 129: score 106.5, E = 3.3e-29 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal + +l+++g l DVtLv++d ++f AHKa La S+YF+ + fg04234 22 FRALYEEGLLLDVTLVIED--------HQFQAHKALLATQSDYFRIM 60 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks Ft + + e+++ i l++ +++ f +L+f+Y g+++++ fg04234 61 FTAD------MRERDQD-KIHLKGLTATGFSHVLQFMYYGTIELS----- 98 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* + +v+++L+aA + q+ +v+ C++fl+ ++ fg04234 99 ------MNTVHEILQAA-MYVQLIEVVKFCCSFLLAKI 129 PF07707.5.fs: domain 1 of 1, from 134 to 238: score 71.5, E = 1.1e-18 *->CLgIrrfAday..gceeLaeaAdrfilqnFleVakseEFlq.Lskeq C I+r+ d ++ + e ++e+ d f+l nF+ +++ ++Fl+ Ls+e+ fg04234 134 CAEIMRLLDDFgvNIEGVREKLDTFLLDNFVPLMSRPDFLSyLSFEK 180 LielLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLs L ++L +D+L E e++eAv +W++hd R++h+ + +++R+ L++ fg04234 181 LMSYLDNDHLSRFPEIELYEAVQSWLRHDRR-RWRHTDTIIQNIRFCLMT 229 pkyLlevve<-* p+ e v+ fg04234 230 PTSVFEKVK 238 PF07707.5.ls: domain 1 of 1, from 134 to 238: score 73.5, E = 6.4e-19 *->CLgIrrfAday..gceeLaeaAdrfilqnFleVakseEFlq.Lskeq C I+r+ d ++ + e ++e+ d f+l nF+ +++ ++Fl+ Ls+e+ fg04234 134 CAEIMRLLDDFgvNIEGVREKLDTFLLDNFVPLMSRPDFLSyLSFEK 180 LielLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLs L ++L +D+L E e++eAv +W++hd R++h+ + +++R+ L++ fg04234 181 LMSYLDNDHLSRFPEIELYEAVQSWLRHDRR-RWRHTDTIIQNIRFCLMT 229 pkyLlevve<-* p+ e v+ fg04234 230 PTSVFEKVK 238 PF01344.15.ls: domain 1 of 5, from 317 to 367: score 26.5, E = 8.7e-05 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl p + + + +++ ++ GG +++++ ++++v++YDp+ n+W ++ fg04234 317 PLRPDCLAIVNNFVFLLGGEELgpdgefHASSKVFRYDPRQNSWLQM 363 psmp<-* ++m+ fg04234 364 ADMS 367 PF01344.15.fs: domain 1 of 5, from 317 to 367: score 24.5, E = 4e-06 *->pRsgagvvvldgkiYviGGydg......qslnsvevYDpetntWtkl p + + + +++ ++ GG +++++ ++++v++YDp+ n+W ++ fg04234 317 PLRPDCLAIVNNFVFLLGGEELgpdgefHASSKVFRYDPRQNSWLQM 363 psmp<-* ++m+ fg04234 364 ADMS 367 PF01344.15.ls: domain 2 of 5, from 369 to 414: score 37.8, E = 3.4e-08 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pRs ++v v++ iY++ G++ ++ + s e+YD ++++W+++ + p fg04234 369 PRSEFAVGVIGKFIYAVAGRTRdETFYSTERYDITNDKWEFVDPYP 414 -* fg04234 - - PF01344.15.fs: domain 2 of 5, from 369 to 414: score 35.8, E = 2.4e-09 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< pRs ++v v++ iY++ G++ ++ + s e+YD ++++W+++ + p fg04234 369 PRSEFAVGVIGKFIYAVAGRTRdETFYSTERYDITNDKWEFVDPYP 414 -* fg04234 - - PF07646.5.ls: domain 2 of 4, from 369 to 414: score 14.7, E = 0.31 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW pr+ a+ v+g +y v G+ de + + ++d +W fg04234 369 PRSEFAVGVIGKFIYAVAGR--------TRDETFYSTERYDITNDKW 407 eklpalp<-* e + + p fg04234 408 EFVDPYP 414 PF01344.15.fs: domain 3 of 5, from 416 to 476: score 17.9, E = 0.0003 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpe............ +g+ +vl++k++++GG ++++ ++ v v+Dp+++++ +++++++ fg04234 416 NKYGHEGTVLNNKLFITGGITSsSTSKQVCVFDPSkegtieqrtrrt 462 ...tntWtklpsmp<-* + tn+W+ + m+ fg04234 463 qvvTNCWENKSKMN 476 PF01344.15.ls: domain 3 of 5, from 416 to 476: score 19.9, E = 0.0086 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpe............ +g+ +vl++k++++GG ++++ ++ v v+Dp+++++ +++++++ fg04234 416 NKYGHEGTVLNNKLFITGGITSsSTSKQVCVFDPSkegtieqrtrrt 462 ...tntWtklpsmp<-* + tn+W+ + m+ fg04234 463 qvvTNCWENKSKMN 476 PF07646.5.ls: domain 3 of 4, from 478 to 530: score 22.2, E = 0.0018 *->pryphasvvpggklyvvGGs..fkgnrgtgngdesssdllvldpetn r+ h +++++gklyv+GG+ + +++ g +s+ + +pet fg04234 478 ARCFHKMISYNGKLYVFGGVcvILRASFESQGCPSTEVY---NPETD 521 vWeklpalp<-* +W+ l+++p fg04234 522 QWTILASMP 530 PF01344.15.ls: domain 4 of 5, from 478 to 530: score 57.8, E = 3.3e-14 *->pRsgagvvvldgkiYviGGydg........qslnsvevYDpetntWt +R+++ + +++gk+Yv+GG++ + + ++q s evY+pet++Wt fg04234 478 ARCFHKMISYNGKLYVFGGVCVilrasfesQGCPSTEVYNPETDQWT 524 klpsmp<-* +l+smp fg04234 525 ILASMP 530 PF01344.15.fs: domain 4 of 5, from 478 to 530: score 55.8, E = 5.1e-15 *->pRsgagvvvldgkiYviGGydg........qslnsvevYDpetntWt +R+++ + +++gk+Yv+GG++ + + ++q s evY+pet++Wt fg04234 478 ARCFHKMISYNGKLYVFGGVCVilrasfesQGCPSTEVYNPETDQWT 524 klpsmp<-* +l+smp fg04234 525 ILASMP 530 PF07646.5.fs: domain 4 of 5, from 478 to 530: score 20.2, E = 0.00012 *->pryphasvvpggklyvvGGs..fkgnrgtgngdesssdllvldpetn r+ h +++++gklyv+GG+ + +++ g +s+ + +pet fg04234 478 ARCFHKMISYNGKLYVFGGVcvILRASFESQGCPSTEVY---NPETD 521 vWeklpalp<-* +W+ l+++p fg04234 522 QWTILASMP 530 PF01344.15.ls: domain 5 of 5, from 532 to 578: score 37.1, E = 5.6e-08 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp Rsg+gv+vld +i v GG + ++ +++s+ +Dp++n+W++ ++ fg04234 532 GRSGHGVTVLDKQIMVLGGLCYngHYSDSILTFDPDENKWKEDEYPR 578 <-* fg04234 - - PF07646.5.fs: domain 5 of 5, from 532 to 578: score 18.5, E = 0.00036 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++h ++v++ ++ v GG ++++s+++l +dp++n+W fg04234 532 GRSGHGVTVLDKQIMVLGGL-------CYNGHYSDSILTFDPDENKW 571 eklpalp<-* ++ + fg04234 572 KEDEYPR 578 PF07646.5.ls: domain 4 of 4, from 532 to 578: score 20.4, E = 0.0061 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +r++h ++v++ ++ v GG ++++s+++l +dp++n+W fg04234 532 GRSGHGVTVLDKQIMVLGGL-------CYNGHYSDSILTFDPDENKW 571 eklpalp<-* ++ + fg04234 572 KEDEYPR 578 PF01344.15.fs: domain 5 of 5, from 532 to 578: score 35.1, E = 3.9e-09 *->pRsgagvvvldgkiYviGGydg..qslnsvevYDpetntWtklpsmp Rsg+gv+vld +i v GG + ++ +++s+ +Dp++n+W++ ++ fg04234 532 GRSGHGVTVLDKQIMVLGGLCYngHYSDSILTFDPDENKWKEDEYPR 578 <-* fg04234 - - //