hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-08391801/chunk_1/iprscan-20080809-08391801.nocrc
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Query sequence: fg04234
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00612                                                 128.8    5.8e-34   5
SM00225                                                  91.9    7.3e-23   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00225      1/1      32   129 ..     1   114 []    91.9  7.3e-23
SM00612      1/5     329   380 ..     1    55 []    27.0   0.0026
SM00612      2/5     381   427 ..     1    55 []    30.5  0.00022
SM00612      3/5     428   489 ..     1    55 []    15.0     0.42
SM00612      4/5     490   543 ..     1    55 []    51.5  1.1e-10
SM00612      5/5     544   593 ..     1    55 []     4.8        6

Alignments of top-scoring domains:
SM00225: domain 1 of 1, from 32 to 129: score 91.9, E = 7.3e-23
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                       Dvtlv+++         ++f+a  Hka+La+    S+yF+ +f+ +
     fg04234    32    LDVTLVIED---------HQFQA--HKALLATQ---SDYFRIMFTAd 64   

                   ........ieldDeallievspeaFralLnflYt.kldlpeedvenveel
                    +++++++i+l++       +++ F ++L+f+Y ++++l+++   +v e+
     fg04234    65 mrerdqdkIHLKG------LTATGFSHVLQFMYYgTIELSMN---TVHEI 105  

                   LelAdfldSYGqip.lvelCeefllknl<-*
                   L++A +     q+ ++v+ C++fll ++   
     fg04234   106 LQAAMYV----QLIeVVKFCCSFLLAKI    129  

SM00612: domain 1 of 5, from 329 to 380: score 27.0, E = 0.0026
                   *->kiYvvGGfdgttrclp.gegqrlksvEvYDpetnkWrpvpsMptpRs
                       ++  GG     +  p+ge +++++v++YDp+ n W ++++M++pRs
     fg04234   329    FVFLLGG--EELG--PdGEFHASSKVFRYDPRQNSWLQMADMSVPRS 371  

                   gagvaving<-*
                    ++v+vi++   
     fg04234   372 EFAVGVIGK    380  

SM00612: domain 2 of 5, from 381 to 427: score 30.5, E = 0.00022
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWrpvpsMptpRsg
                       iY+v G+ +         +++ s+E+YD  ++kW+ v + p+  +g
     fg04234   381    FIYAVAGRTR--------DETFYSTERYDITNDKWEFVDPYPVNKYG 419  

                   agvaving<-*
                   +  +v+n+   
     fg04234   420 HEGTVLNN    427  

SM00612: domain 3 of 5, from 428 to 489: score 15.0, E = 0.42
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDp...............et
                      k++++GG           ++++k v v+Dp+++++ ++++++++  t
     fg04234   428    KLFITGGITS--------SSTSKQVCVFDPskegtieqrtrrtqvVT 466  

                   nkWrpvpsMptpRsgagvaving<-*
                   n W++  +M+++R+ + + + ng   
     fg04234   467 NCWENKSKMNYARCFHKMISYNG    489  

SM00612: domain 4 of 5, from 490 to 543: score 51.5, E = 1.1e-10
                   *->kiYvvGGfdgttrclp.gegqrlksvEvYDpetnkWrpvpsMptpRs
                      k+Yv+GG   + + + + e+q + s+EvY+pet++W++++sMp +Rs
     fg04234   490    KLYVFGG--VCVILRAsFESQGCPSTEVYNPETDQWTILASMPIGRS 534  

                   gagvaving<-*
                   g+gv+v+++   
     fg04234   535 GHGVTVLDK    543  

SM00612: domain 5 of 5, from 544 to 593: score 4.8, E = 6
                   *->kiYvvGGfdgttrclpgegqrlksvEvYDpetnkWr..pvpsMptpR
                      +i+v GG   +       g++++s+  +Dp++nkW++++ p Mp++ 
     fg04234   544    QIMVLGGLCYN-------GHYSDSILTFDPDENKWKedEYPRMPCKL 583  

                   sgagvaving<-*
                    g  v+ ++    
     fg04234   584 DGLQVCNLHF    593  

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