hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080809/iprscan-20080809-08521541/chunk_1/iprscan-20080809-08521541.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fg04853 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00146 456.0 1.9e-132 1 SM00145 299.6 2.3e-85 1 SM00142 122.3 5.2e-32 1 SM00312 106.7 2.7e-27 1 SM00239 77.3 1.8e-18 1 SM00144 76.1 4.2e-18 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00144 1/1 375 477 .. 1 116 [] 76.1 4.2e-18 SM00142 1/1 630 739 .. 1 133 [] 122.3 5.2e-32 SM00145 1/1 816 1002 .. 1 232 [] 299.6 2.3e-85 SM00146 1/1 1090 1352 .. 1 336 [] 456.0 1.9e-132 SM00312 1/1 1376 1488 .. 1 142 [] 106.7 2.7e-27 SM00239 1/1 1529 1634 .. 1 92 [] 77.3 1.8e-18 Alignments of top-scoring domains: SM00144: domain 1 of 1, from 375 to 477: score 76.1, E = 4.2e-18 *->ssrlvPeplpkktiankilivvhlekrvhnkqqtktlkvnpnctpds +++++Pe+l + +++ v+ + q t+++n ++t+d fg04853 375 AVTPSPEHLG---DEVNLKVTVLCD----RLQEALTFTCNCSSTVDL 414 vleealtKfakklslhdqedptdegdYiLKVcGrdEYllgdhpLgsfeyi ++ ++l+ +++++ +d++ d++LK+cG++E+l+++h Lgs+eyi fg04853 415 LIYQTLCY---THDDLRNVDVG---DFVLKPCGLEEFLQNKHALGSHEYI 458 rnclkngtephLvLvelsk<-* + c+k + ++ L+L+e+ fg04853 459 QYCRKFDIDIRLQLMEQKV 477 SM00142: domain 1 of 1, from 630 to 739: score 122.3, E = 5.2e-32 *->vkiesLwdgkrplvalPhestialihgiplnwsslyesscvdlyvei +++++++ r+l +t+++ h+ip++w ++ye d+y+++ fg04853 630 DLVQEACHFARSLA-----FTVYATHRIPIIWATSYE----DFYLSC 667 qLyhGvgkllclpvsTsyknyvkaffnrtiiltvkWnewltftpikisdL +L+hG gk lc+p +T++ +f++++++l ++W+++++f p+++++L fg04853 668 SLSHG-GKELCSPLQTRR----AHFSKYLFHL-IVWDQQICF-PVQVNRL 710 PreArLcitiyevkddskksepfgsvlVgssnlslf<-* Pre++Lc t+y+ ++ +s +++n++ + fg04853 711 PRETLLCATLYALPIPPPGSS-------SEANKQRR 739 SM00145: domain 1 of 1, from 816 to 1002: score 299.6, E = 2.3e-85 *->drdlkpsldseerdrLeaIlkydplyeLteeekdLiWkfRhyyltnn ++++ + l++e++++L++I+++++ly+Lt+ +k+ +W++R yy++++ fg04853 816 RYEFGS-LREEDQRKLKDIMQKESLYWLTDADKKRLWEKR-YYCHSE 860 pkALplvcgPKfLl.svnWsdadevaqalsLLkkWvnapldpedALELLd +Lp +L ++++W++a+ + + ++LLk+W ++++++dAL LL+ fg04853 861 VSSLP-----LVLAsAPSWEWAC-LPDIYVLLKQW--THMNHQDALGLLH 902 pkFpdnNvpkVRayAVsrLesasDeeLllYLLQLVQALKYEnlddiksle ++Fpd ++VR++AV+++ s+sD+eLl+YL+QLVQALKYE fg04853 903 ATFPD---QEVRRMAVQWIGSLSDAELLDYLPQLVQALKYE--------- 940 cefdqdvsasktkeedgpyldSpLarFLLeRAlkNpriGhffyWyLksEi +yldSpL+rFLL+RA+++ r++h+f+W+Lk+ + fg04853 941 -----------------CYLDSPLVRFLLKRAVSDLRVTHYFFWLLKDGL 973 ekddslhdphvserfgllleaylrgctgthlkelkk<-* +d+++s+r+++ll a+l++c g++l+e+++ fg04853 974 ------KDSQFSIRYQYLLAALLCCC-GKGLREEFN 1002 SM00146: domain 1 of 1, from 1090 to 1352: score 456.0, E = 1.9e-132 *->avIfKggDDLRQDalvlQllrlmdklLkkdsetrrldLhlrpYkvlp +vIfK+gDDLRQD+l+lQ++r+m k++ ++ +ld+++ ++++ + fg04853 1090 RVIFKCGDDLRQDMLTLQMIRIMSKIWVQE----GLDMRMVIFRCFS 1132 tgpksGliEvvpnsetlheIlkelrkkkkipldykqlfmldmlvaeieka tg + G++E++pn+etl++I++ fg04853 1133 TGRGRGMVEMIPNAETLRKIQV---------------------------- 1154 qyptitlakakkkalrykhatlleklkvfegatsafkppvLydwfkekfp ++g+t++fk+++L+dw+++++p fg04853 1155 ----------------------------EHGVTGSFKDRPLADWLQKHNP 1176 dpneiyfeardnFtrScAgySvvtYiLGlGDRHndNImldrktGhlfHID +++ +y +a++nF++ScAg++v+tY+LG++DRHndNIml+ +tGh+fHID fg04853 1177 GED-EYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLK-TTGHMFHID 1224 FGfilgngpklpgfklfgRErvPFrLTpemvdvmGgGgkpsgvfglFrsl FG +lg+++++ +k R+r+PF++T++m +v++gG+kps f+ F++l fg04853 1225 FGRFLGHAQMFGNIK---RDRAPFVFTSDMAYVINGGDKPSSRFHDFVDL 1271 CerayralRknsnllmnllelMlsdglmpewrsgekdikylrerlrldvl C++ay+++Rk+++l++nll lMls+g+ pe++ +d+ky+ ++lr++ fg04853 1272 CCQAYNLIRKHTHLFLNLLGLMLSCGI-PELSDL-EDLKYVYDALRPQ-D 1318 sdeeaaeyfkktektkliessleslttrlndlfhllaql<-* ++ +a++yf++ liessl+s t+ln+++h+laq+ fg04853 1319 TEANATTYFTR-----LIESSLGSVATKLNFFIHNLAQM 1352 SM00312: domain 1 of 1, from 1376 to 1488: score 106.7, E = 2.7e-27 *->dniaivavveeetsgkkrgdgkhyyyvieietstnedveewtvyRRY ++i+ v + e++ ++++k y+yv+++ +++ + e ++ R + fg04853 1376 GRISDVFLCRHEKI---FHPNKGYIYVVKVMRENTH--EATYIQRTF 1417 sdFleLhskLlkkfpqekrrriiPplPekkllgryreraekesmkvkksl ++F+eLh+kL+ fp ++ +P +P++ ++gr+ fg04853 1418 EEFQELHNKLRLLFP----SSHLPSFPSRFVIGRS--------------- 1448 nnfseefiekRrrgLerYLqkllnhPelinhyrvsevvleFLess<-* + e+++e+Rr+ L+ Y+++l+++P+++++ +++v++F+++ fg04853 1449 --RGEAVAERRREELNGYIWHLIHAPPEVAE---CDLVYTFFHPL 1488 SM00239: domain 1 of 1, from 1529 to 1634: score 77.3, E = 1.8e-18 *->tLtvkiisArnLp........DPYVkvs...........kTkvvkkt +L ++++ r+L +++++DPYVk++ +++++++++kTkv +kt fg04853 1529 KLFIMVMHIRGLQllqdgndpDPYVKIYllpdpqkttkrKTKVARKT 1575 lsgfNPvWnEesetFeFevpp......s.LeieVyDk......dfiGrvt + NP++nE +++++ +p+++ ++++L+++V ++ + ++ ++G+v+ fg04853 1576 C---NPTYNE---MLVYDGIPkgdlqqReLQLSVLSEqgfwenVLLGEVN 1619 ippnnahqhsadglihlsell.ggrh.kl<-* i+ l+el+ ++++++ fg04853 1620 IR--------------LRELDlAQEKtGW 1634 //