hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080809/iprscan-20080809-09273144/chunk_1/iprscan-20080809-09273144.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fg05857
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF06990.2.fs    Galactose-3-O-sulfotransferase          423.2   3.3e-124   2
PF06990.2.ls    Galactose-3-O-sulfotransferase          366.9     3e-107   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF06990.2.ls      1/1      39   507 ..     1   431 []   366.9   3e-107
PF06990.2.fs      1/2     101   253 ..    77   239 ..   220.2  3.8e-63
PF06990.2.fs      2/2     335   507 ..   263   431 .]   203.0  3.2e-58

Alignments of top-scoring domains:
PF06990.2.ls: domain 1 of 1, from 39 to 507: score 366.9, E = 3e-107
                   *->MlplLqrLQkktkvillkkLvLlvLllasflLLvysyAvlslhadLe
                      M pl        +    ++++L+v    +f L    +      ++L 
     fg05857    39    MGPLSPARTLRLWGPRSLGVALGVFMTIGFALQLLGGPFQRRLPGLQ 85   

                   ldTPlfaascsPlaLEPEAviRANGSAGespPrrnHmtivFLKTHKTASs
                   l  P ++   + l                +pPr      vFLKTHK  Ss
     fg05857    86 LRQPSAPSLRPALP--------------SCPPRQR---LVFLKTHKSGSS 118  

                   TvlNILFRFAekHnLkvALPHagsrvdfdYPrlFaaryVeDYRPGavgat
                    vl  L R++++H L +ALP   +r +f+YP+lF a+ V+ YRP + g +
     fg05857   119 SVLSLLHRYGDQHGLRFALP---ARYQFGYPKLFQASRVKGYRPQGGGTQ 165  

                   rrFnilcnHLRFdldevrklmPtdtvYvtiLRdPaalfESsFsYYktyvP
                    +F+ilc H+RF+l ev  +mP d ++++i RdPaal  S FsYYk    
     fg05857   166 LPFHILCHHMRFNLKEVLQVMPSDSFFFSIVRDPAALARSAFSYYKSTSS 215  

                   afRkvpaadKLeaFLraPeaYYddsehLravYakNlLfFDLGyDn.....
                   afRk p+   L aFL+ P+ +Y+++     +Ya+NlL+FD+G  ++++++
     fg05857   216 AFRKSPS---LAAFLANPRGFYRPGAR-GDHYARNLLWFDFGLPFppekr 261  

                   ........erdprseeaYvr................erIleV........
                    ++++ ++ rdp  ++  ++  +++ +++ ++ +++++I  V++ +++++
     fg05857   262 akrgnihpPRDPNPPQ--LQvlpsgagpraqtlnpnALIHPVstvtdhrs 309  

                   .......................ErrFrLVLiaEYfDESLVLLrrlLaWe
                   + +++ + + ++++  + +      +F LV++aEYfDESLVLL + L+W 
     fg05857   310 qisspasfdlgsssfiqwglawlDSVFDLVMVAEYFDESLVLLADALCWG 359  

                   LdDVlyfkLNARaa.....ssVaR..LSaelaeLARrAraWnaLDarLYe
                   LdDV+ f  NA a ++++ s V+ ++L ae + L  rAraWn LD+ LY 
     fg05857   360 LDDVVGFMHNAQAGhkqglSTVSNsgLTAEDRQLTARARAWNNLDWALYV 409  

                   HFNatfWrkvRaelGreRleREveeLRearrrLlslCldDggaLkdaAqI
                   HFN+++W+++ ++ G  Rl+  v+eLR++r+ L+  Cl +g a  d   I
     fg05857   410 HFNRSLWARI-EKYGQGRLQTAVAELRARREALAKHCLVGGEA-SDPKYI 457  

                   rderLqPwQPsgkadILGYnLkkgldqralevCrrLvmPEvQYladLlak
                    d r +P+Q  g a +LGY L+ gl  +  e C rL++PE+QY  +L  k
     fg05857   458 TDRRFRPFQ-FGSAKVLGYILRSGLSPQDQEECERLATPELQYKDKLDVK 506  

                   q<-*
                   q   
     fg05857   507 Q    507  

PF06990.2.fs: domain 1 of 2, from 101 to 253: score 220.2, E = 3.8e-63
                   *->spPrrnHmtivFLKTHKTASsTvlNILFRFAekHnLkvALPHagsrv
                      +pPr      vFLKTHK  Ss vl  L R++++H L +ALP   +r 
     fg05857   101    CPPRQR---LVFLKTHKSGSSSVLSLLHRYGDQHGLRFALP---ARY 141  

                   dfdYPrlFaaryVeDYRPGavgatrrFnilcnHLRFdldevrklmPtdtv
                   +f+YP+lF a+ V+ YRP + g + +F+ilc H+RF+l ev  +mP d +
     fg05857   142 QFGYPKLFQASRVKGYRPQGGGTQLPFHILCHHMRFNLKEVLQVMPSDSF 191  

                   YvtiLRdPaalfESsFsYYktyvPafRkvpaadKLeaFLraPeaYYddse
                   +++i RdPaal  S FsYYk    afRk p+   L aFL+ P+ +Y+++ 
     fg05857   192 FFSIVRDPAALARSAFSYYKSTSSAFRKSPS---LAAFLANPRGFYRPGA 238  

                   hLravYakNlLfFDLG<-*
                       +Ya+NlL+FD+G   
     fg05857   239 R-GDHYARNLLWFDFG    253  

PF06990.2.fs: domain 2 of 2, from 335 to 507: score 203.0, E = 3.2e-58
                   *->rFrLVLiaEYfDESLVLLrrlLaWeLdDVlyfkLNARaa.....ssV
                      +F LV++aEYfDESLVLL + L+W LdDV+ f  NA a ++++ s V
     fg05857   335    VFDLVMVAEYFDESLVLLADALCWGLDDVVGFMHNAQAGhkqglSTV 381  

                   aR..LSaelaeLARrAraWnaLDarLYeHFNatfWrkvRaelGreRleRE
                   + ++L ae + L  rAraWn LD+ LY HFN+++W+++ ++ G  Rl+  
     fg05857   382 SNsgLTAEDRQLTARARAWNNLDWALYVHFNRSLWARI-EKYGQGRLQTA 430  

                   veeLRearrrLlslCldDggaLkdaAqIrderLqPwQPsgkadILGYnLk
                   v+eLR++r+ L+  Cl +g a  d   I d r +P+Q  g a +LGY L+
     fg05857   431 VAELRARREALAKHCLVGGEA-SDPKYITDRRFRPFQ-FGSAKVLGYILR 478  

                   kgldqralevCrrLvmPEvQYladLlakq<-*
                    gl  +  e C rL++PE+QY  +L  kq   
     fg05857   479 SGLSPQDQEECERLATPELQYKDKLDVKQ    507  

//