# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofg06748.fasta.nr -Q fg06748.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fg06748, 293 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6818677 sequences Expectation_n fit: rho(ln(x))= 6.1564+/-0.000197; mu= 6.2996+/- 0.011 mean_var=113.9247+/-21.852, 0's: 31 Z-trim: 49 B-trim: 2 in 1/65 Lambda= 0.120161 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62087872|dbj|BAD92383.1| transcription factor A ( 293) 1923 343.4 2.4e-92 gi|37060|emb|CAA40683.1| transcription factor AP-4 ( 321) 1231 223.5 3.4e-56 gi|1729833|sp|Q01664|TFAP4_HUMAN Transcription fac ( 338) 1231 223.5 3.5e-56 gi|49456413|emb|CAG46527.1| TFAP4 [Homo sapiens] ( 338) 1227 222.8 5.6e-56 gi|119605728|gb|EAW85322.1| transcription factor A ( 338) 1226 222.7 6.4e-56 gi|119937589|ref|XP_001256799.1| PREDICTED: simila ( 312) 1225 222.5 6.8e-56 gi|26343213|dbj|BAC35263.1| unnamed protein produc ( 334) 1225 222.5 7.1e-56 gi|151554888|gb|AAI48099.1| TFAP4 protein [Bos tau ( 335) 1225 222.5 7.1e-56 gi|73959291|ref|XP_547149.2| PREDICTED: similar to ( 337) 1225 222.5 7.2e-56 gi|8886322|gb|AAF80448.1|AF161262_1 activator prot ( 338) 1225 222.5 7.2e-56 gi|3152675|gb|AAC17116.1| AP-4 [Homo sapiens] ( 338) 1225 222.5 7.2e-56 gi|194219278|ref|XP_001499492.2| PREDICTED: simila ( 338) 1225 222.5 7.2e-56 gi|149042662|gb|EDL96299.1| transcription factor A ( 338) 1225 222.5 7.2e-56 gi|126335196|ref|XP_001363483.1| PREDICTED: simila ( 347) 1217 221.1 1.9e-55 gi|189441848|gb|AAI67689.1| Unknown (protein for M ( 333) 1077 196.8 3.8e-48 gi|189541232|ref|XP_696700.3| PREDICTED: similar t ( 322) 1038 190.0 4e-46 gi|109127490|ref|XP_001095929.1| PREDICTED: simila ( 240) 1019 186.6 3.1e-45 gi|149427740|ref|XP_001521575.1| PREDICTED: simila ( 249) 944 173.7 2.6e-41 gi|47206287|emb|CAF87943.1| unnamed protein produc ( 354) 902 166.5 5.3e-39 gi|47219025|emb|CAG00164.1| unnamed protein produc ( 401) 878 162.4 1e-37 gi|47223900|emb|CAG06077.1| unnamed protein produc ( 361) 806 149.9 5.5e-34 gi|70568882|dbj|BAE06310.1| transcription factor p ( 625) 654 123.7 7.1e-26 gi|70568877|dbj|BAE06309.1| transcription factor p ( 683) 654 123.8 7.6e-26 gi|156218111|gb|EDO39015.1| predicted protein [Nem ( 134) 543 103.9 1.4e-20 gi|193582534|ref|XP_001945298.1| PREDICTED: simila ( 353) 487 94.6 2.4e-17 gi|189236178|ref|XP_967737.2| PREDICTED: similar t ( 359) 451 88.3 1.8e-15 gi|110749113|ref|XP_001122450.1| PREDICTED: simila ( 537) 451 88.5 2.5e-15 gi|119605726|gb|EAW85320.1| transcription factor A ( 249) 430 84.6 1.8e-14 gi|118111663|ref|XP_427787.2| PREDICTED: hypotheti ( 67) 407 80.1 1.1e-13 gi|170774031|gb|ACB32276.1| transcription factor A ( 331) 410 81.2 2.4e-13 gi|77745265|gb|ABB02533.1| transcription factor AP ( 330) 401 79.6 7.1e-13 gi|194191622|gb|EDX05198.1| GD21926 [Drosophila si ( 630) 384 76.9 8.8e-12 gi|27819859|gb|AAO24978.1| RE01132p [Drosophila me ( 543) 381 76.3 1.1e-11 gi|5731129|gb|AAD48781.1|AF158371_1 activator prot ( 631) 381 76.4 1.3e-11 gi|115683678|ref|XP_783888.2| PREDICTED: hypotheti ( 389) 378 75.7 1.3e-11 gi|190660896|gb|EDV58088.1| GG24179 [Drosophila er ( 629) 380 76.2 1.4e-11 gi|194176069|gb|EDW89680.1| GE19372 [Drosophila ya ( 632) 380 76.2 1.4e-11 gi|54645463|gb|EAL34202.1| GA20511-PA [Drosophila ( 624) 370 74.5 4.7e-11 gi|194117851|gb|EDW39894.1| GL14101 [Drosophila pe ( 624) 370 74.5 4.7e-11 gi|190617576|gb|EDV33100.1| GF21721 [Drosophila an ( 638) 362 73.1 1.2e-10 gi|194163020|gb|EDW77921.1| GK24289 [Drosophila wi ( 700) 360 72.8 1.7e-10 gi|194132995|gb|EDW54563.1| GM17917 [Drosophila se ( 608) 358 72.4 1.9e-10 gi|193912553|gb|EDW11420.1| GI14377 [Drosophila mo ( 659) 355 71.9 3e-10 gi|193905364|gb|EDW04231.1| GH10096 [Drosophila gr ( 679) 355 71.9 3e-10 gi|194156061|gb|EDW71245.1| GJ16254 [Drosophila vi ( 671) 347 70.5 7.9e-10 gi|158590083|gb|EDP28841.1| Helix-loop-helix DNA-b ( 362) 297 61.6 2e-07 gi|158600840|gb|EDP37901.1| Helix-loop-helix DNA-b ( 163) 292 60.5 2e-07 gi|30424330|emb|CAD90178.1| C. elegans protein F58 ( 428) 291 60.7 4.7e-07 gi|24817504|emb|CAA80167.2| C. elegans protein F58 ( 429) 291 60.7 4.7e-07 gi|187031485|emb|CAP29549.1| C. briggsae CBR-HLH-1 ( 375) 284 59.4 9.9e-07 >>gi|62087872|dbj|BAD92383.1| transcription factor AP-4 (293 aa) initn: 1923 init1: 1923 opt: 1923 Z-score: 1813.0 bits: 343.4 E(): 2.4e-92 Smith-Waterman score: 1923; 100.000% identity (100.000% similar) in 293 aa overlap (1-293:1-293) 10 20 30 40 50 60 fg0674 SLALTSQRTGITVPGPGWVLSGLSYPQPADSVRPGVPESTPPSLSGGGLASFAAGEGCSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SLALTSQRTGITVPGPGWVLSGLSYPQPADSVRPGVPESTPPSLSGGGLASFAAGEGCSF 10 20 30 40 50 60 70 80 90 100 110 120 fg0674 HWGPLEMNDEEGALAEPVPVLSGSLANIPLTPETQRDQERRIRREIANSNERRRMQSINA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 HWGPLEMNDEEGALAEPVPVLSGSLANIPLTPETQRDQERRIRREIANSNERRRMQSINA 70 80 90 100 110 120 130 140 150 160 170 180 fg0674 GFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQELSGSSPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQELSGSSPK 130 140 150 160 170 180 190 200 210 220 230 240 fg0674 RRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLEEQVRSLEAHMYPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLEEQVRSLEAHMYPE 190 200 210 220 230 240 250 260 270 280 290 fg0674 KLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQVSRRRPGVGSGDREGDR ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQVSRRRPGVGSGDREGDR 250 260 270 280 290 >>gi|37060|emb|CAA40683.1| transcription factor AP-4 [Ho (321 aa) initn: 1296 init1: 1230 opt: 1231 Z-score: 1164.1 bits: 223.5 E(): 3.4e-56 Smith-Waterman score: 1231; 97.500% identity (99.000% similar) in 200 aa overlap (80-277:7-206) 50 60 70 80 90 100 fg0674 ASFAAGEGCSFHWGPLEMNDEEGALAEPVPVLSG--SLANIPLTPETQRDQERRIRREIA :..: :::::::::::::::::::::::: gi|370 RKTEKEVIGGLCSLANIPLTPETQRDQERRIRREIA 10 20 30 110 120 130 140 150 160 fg0674 NSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|370 NSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQL 40 50 60 70 80 90 170 180 190 200 210 220 fg0674 KRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|370 KRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLE 100 110 120 130 140 150 230 240 250 260 270 280 fg0674 EQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQVSRRRPGVGSG :::::::::::::::::::::::::::::::::::::::::::::::::. gi|370 EQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQLLPPPAPTHHP 160 170 180 190 200 210 290 fg0674 DREGDR gi|370 TVIVPAPPPPPSHHINVVTMGPSSVINSVSTSRQNLDTIVQAIQHIEGTQEKQELEEEQR 220 230 240 250 260 270 >>gi|1729833|sp|Q01664|TFAP4_HUMAN Transcription factor (338 aa) initn: 1296 init1: 1230 opt: 1231 Z-score: 1163.8 bits: 223.5 E(): 3.5e-56 Smith-Waterman score: 1231; 97.500% identity (99.000% similar) in 200 aa overlap (80-277:24-223) 50 60 70 80 90 100 fg0674 ASFAAGEGCSFHWGPLEMNDEEGALAEPVPVLSG--SLANIPLTPETQRDQERRIRREIA :..: :::::::::::::::::::::::: gi|172 MEYFMVPTQKVPSLQHFRKTEKEVIGGLCSLANIPLTPETQRDQERRIRREIA 10 20 30 40 50 110 120 130 140 150 160 fg0674 NSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 NSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQL 60 70 80 90 100 110 170 180 190 200 210 220 fg0674 KRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 KRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLE 120 130 140 150 160 170 230 240 250 260 270 280 fg0674 EQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQVSRRRPGVGSG :::::::::::::::::::::::::::::::::::::::::::::::::. gi|172 EQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQLLPPPAPTHHP 180 190 200 210 220 230 290 fg0674 DREGDR gi|172 TVIVPAPPPPPSHHINVVTMGPSSVINSVSTSRQNLDTIVQAIQHIEGTQEKQELEEEQR 240 250 260 270 280 290 >>gi|49456413|emb|CAG46527.1| TFAP4 [Homo sapiens] g (338 aa) initn: 1293 init1: 1226 opt: 1227 Z-score: 1160.1 bits: 222.8 E(): 5.6e-56 Smith-Waterman score: 1227; 97.000% identity (99.000% similar) in 200 aa overlap (80-277:24-223) 50 60 70 80 90 100 fg0674 ASFAAGEGCSFHWGPLEMNDEEGALAEPVPVLSG--SLANIPLTPETQRDQERRIRREIA :..: :::::::::::::::::::::::: gi|494 MEYFMVPTQKVPSLQHFRKTEKEVIGGLCSLANIPLTPETQRDQERRIRREIA 10 20 30 40 50 110 120 130 140 150 160 fg0674 NSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQL :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|494 NSNERKRMQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQL 60 70 80 90 100 110 170 180 190 200 210 220 fg0674 KRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|494 KRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLE 120 130 140 150 160 170 230 240 250 260 270 280 fg0674 EQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQVSRRRPGVGSG :::::::::::::::::::::::::::::::::::::::::::::::::. gi|494 EQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQLLPPPAPTHHP 180 190 200 210 220 230 290 fg0674 DREGDR gi|494 TVIVPAPPPPPSHHINVVTMGPSSVINSVSTSRQNLDTIVQAIQHIEGTQEKQELEEEQR 240 250 260 270 280 290 >>gi|119605728|gb|EAW85322.1| transcription factor AP-4 (338 aa) initn: 1289 init1: 1225 opt: 1226 Z-score: 1159.1 bits: 222.7 E(): 6.4e-56 Smith-Waterman score: 1226; 97.000% identity (99.000% similar) in 200 aa overlap (80-277:24-223) 50 60 70 80 90 100 fg0674 ASFAAGEGCSFHWGPLEMNDEEGALAEPVPVLSG--SLANIPLTPETQRDQERRIRREIA :..: :::::::::::::::::::::::: gi|119 MEYFMVPTQKVPSLQHFRKTEKEVIGGLCSLANIPLTPETQRDQERRIRREIA 10 20 30 40 50 110 120 130 140 150 160 fg0674 NSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQL ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|119 NSNERRRMQSINAGFQSLKTLIPHTDGEKLSKVAILQQTAEYIFSLEQEKTRLLQQNTQL 60 70 80 90 100 110 170 180 190 200 210 220 fg0674 KRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 KRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLE 120 130 140 150 160 170 230 240 250 260 270 280 fg0674 EQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQVSRRRPGVGSG :::::::::::::::::::::::::::::::::::::::::::::::::. gi|119 EQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQLLPPPAPTHHP 180 190 200 210 220 230 290 fg0674 DREGDR gi|119 TVIVPAPPPPPSHHINVVTMGPSSVINSVSTSRQNLDTIVQAIQHIEGTQEKQELEEEQR 240 250 260 270 280 290 >>gi|119937589|ref|XP_001256799.1| PREDICTED: similar to (312 aa) initn: 1218 init1: 1218 opt: 1225 Z-score: 1158.7 bits: 222.5 E(): 6.8e-56 Smith-Waterman score: 1225; 94.686% identity (96.618% similar) in 207 aa overlap (85-291:1-205) 60 70 80 90 100 110 fg0674 GEGCSFHWGPLEMNDEEGALAEPVPVLSGSLANIPLTPETQRDQERRIRREIANSNERRR :::::::::::::::::::::::::::::: gi|119 LANIPLTPETQRDQERRIRREIANSNERRR 10 20 30 120 130 140 150 160 170 fg0674 MQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQEL 40 50 60 70 80 90 180 190 200 210 220 230 fg0674 SGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLEEQVRSLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLEEQVRSLE 100 110 120 130 140 150 240 250 260 270 280 290 fg0674 AHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQVSRRRPGVGSGDREGDR :::::::::::::::::::::::::::::::::::::.:::: : : :.:. . : gi|119 AHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQHLRTQ--RLRAPVSSSCHSGPHH 160 170 180 190 200 gi|119 HPTVIVPAPAPPPSHHINVVTMGPSSVINSVSTSRQNLDTIVQAIQHIEGTQGQEEEQRR 210 220 230 240 250 260 >>gi|26343213|dbj|BAC35263.1| unnamed protein product [M (334 aa) initn: 1265 init1: 1224 opt: 1225 Z-score: 1158.3 bits: 222.5 E(): 7.1e-56 Smith-Waterman score: 1225; 97.000% identity (99.000% similar) in 200 aa overlap (80-277:20-219) 50 60 70 80 90 100 fg0674 ASFAAGEGCSFHWGPLEMNDEEGALAEPVPVLSG--SLANIPLTPETQRDQERRIRREIA :..: :::::::::::::::::::::::: gi|263 MVPTQKVPSLQHFRKTEKEVIGGLCSLANIPLTPETQRDQERRIRREIA 10 20 30 40 110 120 130 140 150 160 fg0674 NSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 NSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQL 50 60 70 80 90 100 170 180 190 200 210 220 fg0674 KRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 KRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLE 110 120 130 140 150 160 230 240 250 260 270 280 fg0674 EQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQVSRRRPGVGSG ::::::::::::::::::::::::::::::::::::::::::::.::::. gi|263 EQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQHLRTQLLPPPAPTHHP 170 180 190 200 210 220 290 fg0674 DREGDR gi|263 TVIVPAPAPPSSHHINVVTMGPSSVINSVSTSRQNLDTIVQAIQHIEGTQDKQELEEEQR 230 240 250 260 270 280 >>gi|151554888|gb|AAI48099.1| TFAP4 protein [Bos taurus] (335 aa) initn: 1265 init1: 1224 opt: 1225 Z-score: 1158.3 bits: 222.5 E(): 7.1e-56 Smith-Waterman score: 1225; 97.000% identity (99.000% similar) in 200 aa overlap (80-277:24-223) 50 60 70 80 90 100 fg0674 ASFAAGEGCSFHWGPLEMNDEEGALAEPVPVLSG--SLANIPLTPETQRDQERRIRREIA :..: :::::::::::::::::::::::: gi|151 MEYFMMPTQKVPSLQHFRKTEKEVIGGLCSLANIPLTPETQRDQERRIRREIA 10 20 30 40 50 110 120 130 140 150 160 fg0674 NSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 NSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQL 60 70 80 90 100 110 170 180 190 200 210 220 fg0674 KRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 KRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLE 120 130 140 150 160 170 230 240 250 260 270 280 fg0674 EQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQVSRRRPGVGSG ::::::::::::::::::::::::::::::::::::::::::::.::::. gi|151 EQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQHLRTQLLPTPAPTHHP 180 190 200 210 220 230 290 fg0674 DREGDR gi|151 TVIVPAPAPPPSHHINVVTMGPSSVINSVSTSRQNLDTIVQAIQHIEGTQGQEEEQRRAV 240 250 260 270 280 290 >>gi|73959291|ref|XP_547149.2| PREDICTED: similar to tra (337 aa) initn: 1265 init1: 1224 opt: 1225 Z-score: 1158.2 bits: 222.5 E(): 7.2e-56 Smith-Waterman score: 1225; 97.000% identity (99.000% similar) in 200 aa overlap (80-277:24-223) 50 60 70 80 90 100 fg0674 ASFAAGEGCSFHWGPLEMNDEEGALAEPVPVLSG--SLANIPLTPETQRDQERRIRREIA :..: :::::::::::::::::::::::: gi|739 MEYFMVPTQKVPSLQHFRKTEKEVIGGLCSLANIPLTPETQRDQERRIRREIA 10 20 30 40 50 110 120 130 140 150 160 fg0674 NSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 NSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQL 60 70 80 90 100 110 170 180 190 200 210 220 fg0674 KRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 KRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLE 120 130 140 150 160 170 230 240 250 260 270 280 fg0674 EQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQVSRRRPGVGSG ::::::::::::::::::::::::::::::::::::::::::::.::::. gi|739 EQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQHLRTQLLPPPAPTHHP 180 190 200 210 220 230 290 fg0674 DREGDR gi|739 TVIVPAPPPPSHHINVVTMGPSSVINSVSTSRQNLDTIVQAIQHIEGTQERQEQEEEQRR 240 250 260 270 280 290 >>gi|8886322|gb|AAF80448.1|AF161262_1 activator protein (338 aa) initn: 1265 init1: 1224 opt: 1225 Z-score: 1158.2 bits: 222.5 E(): 7.2e-56 Smith-Waterman score: 1225; 97.000% identity (99.000% similar) in 200 aa overlap (80-277:24-223) 50 60 70 80 90 100 fg0674 ASFAAGEGCSFHWGPLEMNDEEGALAEPVPVLSG--SLANIPLTPETQRDQERRIRREIA :..: :::::::::::::::::::::::: gi|888 MEYFMVPTQKVPSLQHFRKTEKEVIGGLCSLANIPLTPETQRDQERRIRREIA 10 20 30 40 50 110 120 130 140 150 160 fg0674 NSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|888 NSNERRRMQSINAGFQSLKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQL 60 70 80 90 100 110 170 180 190 200 210 220 fg0674 KRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|888 KRFIQELSGSSPKRRRAEDKDEGIGSPDIWEDEKAEDLRREMIELRQQLDKERSVRMMLE 120 130 140 150 160 170 230 240 250 260 270 280 fg0674 EQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQQLRTQVSRRRPGVGSG ::::::::::::::::::::::::::::::::::::::::::::.::::. gi|888 EQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQEKLEREQQHLRTQLLPPPAPTHHP 180 190 200 210 220 230 290 fg0674 DREGDR gi|888 TVIVPAPAPPSSHHINVVTMGPSSVINSVSTSRQNLDTIVQAIQHIEGTQDKQELEEEQR 240 250 260 270 280 290 293 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sat Aug 9 09:51:30 2008 done: Sat Aug 9 09:54:11 2008 Total Scan time: 738.330 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]